Timeline



Nov 20, 2019:

3:03 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5746: […]
3:03 PM Changeset [5746] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:27 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5745: […]
2:27 PM Changeset [5745] by olle
Refs #1029. Updates due to version number change to "1.6.0b7". 1. …
1:46 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5744: […]
1:46 PM Changeset [5744] by olle
Refs #1029. Updates of BASE method calls due to update of BASE version …
8:43 AM Changeset [5743] by Nicklas Nordborg
Preparing for future release Reggie 4.25
8:41 AM Milestone Reggie v4.24 completed
See Reggie extension page for more information.
8:41 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.24 (diff)
8:40 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.24 (diff)
8:39 AM reggie-4.24.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.24
8:37 AM Changeset [5742] by Nicklas Nordborg
Tagging Reggie 4.24
8:36 AM Changeset [5741] by Nicklas Nordborg
Preparing to release Reggie 4.24
8:30 AM Changeset [5740] by Nicklas Nordborg
Merged Reggie 4.23.3 to the trunk.
8:25 AM Milestone Reggie v4.23.3 completed
Bug fixes and enhancements for Reggie 4.23.2. Revision Log: …
8:24 AM Changeset [5739] by Nicklas Nordborg
Tagging Reggie 4.23.3
8:24 AM Changeset [5738] by Nicklas Nordborg
Preparing to release Reggie 4.23.3
7:54 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) closed by Nicklas Nordborg
fixed
7:54 AM Ticket #1187 (Implement an "External RNA import" wizard) closed by Nicklas Nordborg
fixed
7:54 AM Ticket #1199 (Implement Variant calling pipeline) closed by Nicklas Nordborg
fixed
7:40 AM Tickets #1190,​1186 batch updated by Nicklas Nordborg
Milestone changed
7:39 AM Tickets #1190,​1186 batch updated by Nicklas Nordborg
In 5737: […]
7:39 AM Changeset [5737] by Nicklas Nordborg
References #1186 and #1190. Disabling code related to the SSP plug-in …

Nov 19, 2019:

3:43 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5736: […]
3:43 PM Changeset [5736] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Fixed some …
3:42 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5735: […]
3:42 PM Changeset [5735] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Removed version …
1:41 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
Status changed
12:00 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5734: […]
11:59 AM Changeset [5734] by olle
Refs #1029. Referral form generation wizard for the NordicTrip …
11:50 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5733: […]
11:50 AM Changeset [5733] by olle
Refs #1029. Referral form generation updated to allow projects to use …
11:23 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5732: […]
11:23 AM Changeset [5732] by olle
Refs #1029. Referral form generation updated in generation of referral …
10:59 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
* 2019-11-18 the following changes were decided for referral form …
10:04 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5731: […]
10:04 AM Changeset [5731] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a variant …

Nov 18, 2019:

2:12 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5730: […]
2:12 PM Changeset [5730] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a dialog …
1:43 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5729: […]
1:43 PM Changeset [5729] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added support …

Nov 15, 2019:

11:32 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5728: […]
11:32 AM Changeset [5728] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
8:24 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update for the NordicTrip referral form generation: * …

Nov 14, 2019:

4:14 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5727: […]
4:14 PM Changeset [5727] by olle
Refs #1029. Referral form generation updated to add suffix ".b1" and …
4:03 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5726: […]
4:03 PM Changeset [5726] by olle
Refs #1029. Referral form generation for project NordicTrip updated …

Nov 13, 2019:

1:32 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5725: […]
1:32 PM Changeset [5725] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added …
11:09 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5724: […]
11:09 AM Changeset [5724] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline …
9:07 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5723: […]
9:07 AM Changeset [5723] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline …
8:56 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5722: […]
8:56 AM Changeset [5722] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Updated the …
8:53 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5721: […]
8:53 AM Changeset [5721] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Renamed the raw …
8:17 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5720: […]
8:17 AM Changeset [5720] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Checked the …

Nov 12, 2019:

1:06 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5719: […]
1:06 PM Changeset [5719] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added …
12:56 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5718: […]
12:56 PM Changeset [5718] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Helper script …
12:54 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5717: […]
12:54 PM Changeset [5717] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Re-factored the …
11:12 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5716: […]
11:12 AM Changeset [5716] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
10:45 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5715: […]
10:45 AM Changeset [5715] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
9:31 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5714: […]
9:31 AM Changeset [5714] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented a …
9:01 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5713: […]
9:01 AM Changeset [5713] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added options in …

Nov 11, 2019:

1:58 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5712: […]
1:58 PM Changeset [5712] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added helper …
1:55 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5711: […]
1:55 PM Changeset [5711] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …

Nov 8, 2019:

3:48 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5710: […]
3:48 PM Changeset [5710] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Changed the …
3:41 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5709: […]
3:41 PM Changeset [5709] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added python …
7:18 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5708: […]
7:18 AM Changeset [5708] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …

Nov 7, 2019:

4:39 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5707: […]
4:38 PM Changeset [5707] by olle
Refs #1029. Updates due to version number change to "1.6.0b6". 1. …
9:27 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5706: […]
9:27 AM Changeset [5706] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Defined …

Nov 6, 2019:

1:46 PM Ticket #1200 (Release exporter changes due to Variant calling pipeline) created by Nicklas Nordborg
When the Variant calling pipeline has been fully implemented (#1199), …
1:12 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5705: […]
1:12 PM Changeset [5705] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Moving the 't' …
11:46 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5704: […]
11:46 AM Changeset [5704] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline All programs …
11:32 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5703: […]
11:32 AM Changeset [5703] by olle
Refs #1029. Referral form generation updated in generation of referral …
11:01 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update for the NordicTrip referral form generation: * …
9:38 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5702: […]
9:38 AM Changeset [5702] by olle
Refs #1029. Referral form generation updated in generation of referral …

Nov 5, 2019:

3:17 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5701: […]
3:17 PM Changeset [5701] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Reorganised some …
2:37 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5700: […]
2:37 PM Changeset [5700] by olle
Refs #1029. Referral form generation updated to support generation of …
8:34 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5699: […]
8:34 AM Changeset [5699] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added filtering …

Nov 4, 2019:

1:53 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5698: […]
1:53 PM Changeset [5698] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added wrapper …
1:50 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5697: […]
1:50 PM Changeset [5697] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Improve error …
1:22 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5696: […]
1:22 PM Changeset [5696] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added second …
1:08 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5695: […]
1:08 PM Changeset [5695] by olle
Refs #1029. Referral form generation updated to store a start info …
11:58 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update for the NordicTrip project: * 2019-10-28 it was …

Nov 1, 2019:

11:12 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design discussion: * Some design choices for referral form …

Oct 31, 2019:

1:40 PM Ticket #1190 (SCAN-B report) updated by Nicklas Nordborg
In 5694: […]
1:40 PM Changeset [5694] by Nicklas Nordborg
References #1190 (and #1199). Implemented a simple check for some …

Oct 30, 2019:

2:10 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5693: […]
2:10 PM Changeset [5693] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a step …

Oct 29, 2019:

9:49 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5692: […]
9:49 AM Changeset [5692] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Copy the …

Oct 28, 2019:

3:17 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5691: […]
3:17 PM Changeset [5691] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Most options …
11:09 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5690: […]
11:09 AM Changeset [5690] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added call to …

Oct 25, 2019:

3:48 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5689: […]
3:48 PM Changeset [5689] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:45 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5688: […]
2:45 PM Changeset [5688] by olle
Refs #1029. Updates due to version number change to "1.6.0b5". 1. …
2:39 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5687: […]
2:39 PM Changeset [5687] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
2:32 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
In 5686: […]
2:32 PM Changeset [5686] by olle
Refs #1029. MeLuDI updated to prepare for creating referral forms for …
11:41 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5685: […]
11:41 AM Changeset [5685] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added wizard for …
11:10 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
11:09 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * As the result of discussions at the …
10:53 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * As the result of discussions at the …
8:56 AM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5684: […]
8:56 AM Changeset [5684] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a skeleton …

Oct 22, 2019:

4:13 PM Ticket #1199 (Implement Variant calling pipeline) updated by Nicklas Nordborg
In 5683: […]
4:13 PM Changeset [5683] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Defined a new …
2:53 PM Ticket #1190 (SCAN-B report) updated by Nicklas Nordborg
In 5682: […]
2:53 PM Changeset [5682] by Nicklas Nordborg
References #1190: SCAN-B report Added plug-in configurations for the …
2:50 PM Ticket #1199 (Implement Variant calling pipeline) created by Nicklas Nordborg
Updated description Variant calling is started from Hisat …
8:46 AM Changeset [5681] by Nicklas Nordborg
Reggie the Snake can now be summoned.

Oct 21, 2019:

1:13 PM Ticket #1198 (Add support for PAD to the "Map external data" wizard) updated by Nicklas Nordborg
In 5680: […]
1:13 PM Changeset [5680] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
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