Timeline



Nov 15, 2019:

11:32 AM Changeset [5728] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …

Nov 14, 2019:

4:14 PM Changeset [5727] by olle
Refs #1029. Referral form generation updated to add suffix ".b1" and …
4:03 PM Changeset [5726] by olle
Refs #1029. Referral form generation for project NordicTrip updated …

Nov 13, 2019:

1:32 PM Changeset [5725] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added …
11:09 AM Changeset [5724] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline …
9:07 AM Changeset [5723] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline …
8:56 AM Changeset [5722] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Updated the …
8:53 AM Changeset [5721] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Renamed the raw …
8:17 AM Changeset [5720] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Checked the …

Nov 12, 2019:

1:06 PM Changeset [5719] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added …
12:56 PM Changeset [5718] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Helper script …
12:54 PM Changeset [5717] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Re-factored the …
11:12 AM Changeset [5716] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
10:45 AM Changeset [5715] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
9:31 AM Changeset [5714] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented a …
9:01 AM Changeset [5713] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added options in …

Nov 11, 2019:

1:58 PM Changeset [5712] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added helper …
1:55 PM Changeset [5711] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …

Nov 8, 2019:

3:48 PM Changeset [5710] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Changed the …
3:41 PM Changeset [5709] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added python …
7:18 AM Changeset [5708] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …

Nov 7, 2019:

4:38 PM Changeset [5707] by olle
Refs #1029. Updates due to version number change to "1.6.0b6". 1. …
9:27 AM Changeset [5706] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Defined …

Nov 6, 2019:

1:46 PM Ticket #1200 (Release exporter changes due to Variant calling pipeline) created by Nicklas Nordborg
When the Variant calling pipeline has been fully implemented (#1199), …
1:12 PM Changeset [5705] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Moving the 't' …
11:46 AM Changeset [5704] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline All programs …
11:32 AM Changeset [5703] by olle
Refs #1029. Referral form generation updated in generation of referral …
9:38 AM Changeset [5702] by olle
Refs #1029. Referral form generation updated in generation of referral …

Nov 5, 2019:

3:17 PM Changeset [5701] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Reorganised some …
2:37 PM Changeset [5700] by olle
Refs #1029. Referral form generation updated to support generation of …
8:34 AM Changeset [5699] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added filtering …

Nov 4, 2019:

1:53 PM Changeset [5698] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added wrapper …
1:50 PM Changeset [5697] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Improve error …
1:22 PM Changeset [5696] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added second …
1:08 PM Changeset [5695] by olle
Refs #1029. Referral form generation updated to store a start info …

Oct 31, 2019:

1:40 PM Changeset [5694] by Nicklas Nordborg
References #1190 (and #1199). Implemented a simple check for some …

Oct 30, 2019:

2:10 PM Changeset [5693] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a step …

Oct 29, 2019:

9:49 AM Changeset [5692] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Copy the …

Oct 28, 2019:

3:17 PM Changeset [5691] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Most options …
11:09 AM Changeset [5690] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added call to …

Oct 25, 2019:

3:48 PM Changeset [5689] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:45 PM Changeset [5688] by olle
Refs #1029. Updates due to version number change to "1.6.0b5". 1. …
2:39 PM Changeset [5687] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
2:32 PM Changeset [5686] by olle
Refs #1029. MeLuDI updated to prepare for creating referral forms for …
11:41 AM Changeset [5685] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added wizard for …
8:56 AM Changeset [5684] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a skeleton …

Oct 22, 2019:

4:13 PM Changeset [5683] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Defined a new …
2:53 PM Changeset [5682] by Nicklas Nordborg
References #1190: SCAN-B report Added plug-in configurations for the …
2:50 PM Ticket #1199 (Implement Variant calling pipeline) created by Nicklas Nordborg
Updated description Variant calling is started from Hisat …
8:46 AM Changeset [5681] by Nicklas Nordborg
Reggie the Snake can now be summoned.

Oct 21, 2019:

1:13 PM Changeset [5680] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …

Oct 18, 2019:

1:22 PM Changeset [5679] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
11:30 AM Changeset [5678] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
10:46 AM Changeset [5677] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
9:42 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) created by Nicklas Nordborg
When the source column contains release id values it should be …

Oct 17, 2019:

9:34 AM Ticket #1197 (Rounding effects may cause the mRNA protocol to incorrectly display ...) closed by Nicklas Nordborg
fixed: In 5676: […]
9:34 AM Changeset [5676] by Nicklas Nordborg
Fixes #1197: Rounding effects may cause the mRNA protocol to …
9:32 AM Ticket #1197 (Rounding effects may cause the mRNA protocol to incorrectly display ...) created by Nicklas Nordborg
The volume to use from an RNA is calculated by using the stored values …

Oct 16, 2019:

2:40 PM Ticket #1196 (Incorrect specifications in the mRNA protocol) closed by Nicklas Nordborg
fixed: In 5675: […]
2:40 PM Changeset [5675] by Nicklas Nordborg
Fixes #1196: Incorrect specifications in the mRNA protocol Removed …
9:12 AM Ticket #1196 (Incorrect specifications in the mRNA protocol) created by Nicklas Nordborg
After extract an RNA comes out with concentration <10ng/µl, which …
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