Timeline



Nov 8, 2019:

3:48 PM Changeset [5710] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Changed the …
3:41 PM Changeset [5709] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added python …
7:18 AM Changeset [5708] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …

Nov 7, 2019:

4:38 PM Changeset [5707] by olle
Refs #1029. Updates due to version number change to "1.6.0b6". 1. …
9:27 AM Changeset [5706] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Defined …

Nov 6, 2019:

1:46 PM Ticket #1200 (Release exporter changes due to Variant calling pipeline) created by Nicklas Nordborg
When the Variant calling pipeline has been fully implemented (#1199), …
1:12 PM Changeset [5705] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Moving the 't' …
11:46 AM Changeset [5704] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline All programs …
11:32 AM Changeset [5703] by olle
Refs #1029. Referral form generation updated in generation of referral …
9:38 AM Changeset [5702] by olle
Refs #1029. Referral form generation updated in generation of referral …

Nov 5, 2019:

3:17 PM Changeset [5701] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Reorganised some …
2:37 PM Changeset [5700] by olle
Refs #1029. Referral form generation updated to support generation of …
8:34 AM Changeset [5699] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added filtering …

Nov 4, 2019:

1:53 PM Changeset [5698] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added wrapper …
1:50 PM Changeset [5697] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Improve error …
1:22 PM Changeset [5696] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added second …
1:08 PM Changeset [5695] by olle
Refs #1029. Referral form generation updated to store a start info …

Oct 31, 2019:

1:40 PM Changeset [5694] by Nicklas Nordborg
References #1190 (and #1199). Implemented a simple check for some …

Oct 30, 2019:

2:10 PM Changeset [5693] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a step …

Oct 29, 2019:

9:49 AM Changeset [5692] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Copy the …

Oct 28, 2019:

3:17 PM Changeset [5691] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Most options …
11:09 AM Changeset [5690] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added call to …

Oct 25, 2019:

3:48 PM Changeset [5689] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
2:45 PM Changeset [5688] by olle
Refs #1029. Updates due to version number change to "1.6.0b5". 1. …
2:39 PM Changeset [5687] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Implemented …
2:32 PM Changeset [5686] by olle
Refs #1029. MeLuDI updated to prepare for creating referral forms for …
11:41 AM Changeset [5685] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added wizard for …
8:56 AM Changeset [5684] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Added a skeleton …

Oct 22, 2019:

4:13 PM Changeset [5683] by Nicklas Nordborg
References #1199: Implement Variant calling pipeline Defined a new …
2:53 PM Changeset [5682] by Nicklas Nordborg
References #1190: SCAN-B report Added plug-in configurations for the …
2:50 PM Ticket #1199 (Implement Variant calling pipeline) created by Nicklas Nordborg
Updated description Variant calling is started from Hisat …
8:46 AM Changeset [5681] by Nicklas Nordborg
Reggie the Snake can now be summoned.

Oct 21, 2019:

1:13 PM Changeset [5680] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …

Oct 18, 2019:

1:22 PM Changeset [5679] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
11:30 AM Changeset [5678] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
10:46 AM Changeset [5677] by Nicklas Nordborg
References #1198: Add support for PAD to the "Map external data" …
9:42 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) created by Nicklas Nordborg
When the source column contains release id values it should be …

Oct 17, 2019:

9:34 AM Ticket #1197 (Rounding effects may cause the mRNA protocol to incorrectly display ...) closed by Nicklas Nordborg
fixed: In 5676: […]
9:34 AM Changeset [5676] by Nicklas Nordborg
Fixes #1197: Rounding effects may cause the mRNA protocol to …
9:32 AM Ticket #1197 (Rounding effects may cause the mRNA protocol to incorrectly display ...) created by Nicklas Nordborg
The volume to use from an RNA is calculated by using the stored values …

Oct 16, 2019:

2:40 PM Ticket #1196 (Incorrect specifications in the mRNA protocol) closed by Nicklas Nordborg
fixed: In 5675: […]
2:40 PM Changeset [5675] by Nicklas Nordborg
Fixes #1196: Incorrect specifications in the mRNA protocol Removed …
9:12 AM Ticket #1196 (Incorrect specifications in the mRNA protocol) created by Nicklas Nordborg
After extract an RNA comes out with concentration <10ng/µl, which …

Oct 15, 2019:

4:08 PM Changeset [5674] by Nicklas Nordborg
References #1190: SCAN-B report Just added a note to remember to …
3:46 PM Changeset [5673] by Nicklas Nordborg
References #1190: SCAN-B report The report combiner plug-in now …
2:52 PM Changeset [5672] by Nicklas Nordborg
References #1190: SCAN-B report Added an activity log definition for …
1:55 PM Changeset [5671] by Nicklas Nordborg
References #1190: SCAN-B report Renamed the "Accept" column/action in …
12:57 PM Changeset [5670] by Nicklas Nordborg
References #1190: SCAN-B report Implemented support for …
11:58 AM Changeset [5669] by Nicklas Nordborg
References #1190: SCAN-B report Implemented support for updating SSP …
9:23 AM Changeset [5668] by Nicklas Nordborg
References #1186: Implement plug-in for running Single Sample …
8:30 AM Changeset [5667] by Nicklas Nordborg
References #1186: Implement plug-in for running Single Sample …

Oct 14, 2019:

2:36 PM Changeset [5666] by Nicklas Nordborg
References #1190: SCAN-B report Added a pipeline setting to the …
11:49 AM Changeset [5665] by Nicklas Nordborg
References #1190: SCAN-B report Added a counter for rawbioassays …
9:11 AM Changeset [5664] by Nicklas Nordborg
References #1190: SCAN-B report Added "SCANB_REPORT" as an option to …

Oct 11, 2019:

1:52 PM Changeset [5663] by Nicklas Nordborg
Merge Reggie 4.23.2 to the the trunk.
1:49 PM Milestone Reggie v4.23.2 completed
Bug fixes and enhancements for Reggie 4.23.1. Revision Log: …
1:48 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.23.2 (diff)
1:48 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.23.2 (diff)
1:46 PM reggie-4.23.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.23.2
1:44 PM Changeset [5662] by Nicklas Nordborg
Tagging Reggie 4.23.2
1:44 PM Changeset [5661] by Nicklas Nordborg
Preparing to release Reggie 4.23.2
1:30 PM Ticket #1193 (The "Map external data to releases" wizard should have more options) closed by Nicklas Nordborg
fixed
1:30 PM Changeset [5660] by Nicklas Nordborg
References #1193: The "Map external data to releases" wizard should …
1:16 PM Ticket #1195 (The "Map external data to releases" wizard should have an option to ...) closed by Nicklas Nordborg
fixed: In 5659: […]
1:16 PM Changeset [5659] by Nicklas Nordborg
Fixes #1195: The "Map external data to releases" wizard should have an …
11:43 AM Changeset [5658] by Nicklas Nordborg
References #1195: The "Map external data to releases" wizard should …
11:04 AM Ticket #1195 (The "Map external data to releases" wizard should have an option to ...) created by Nicklas Nordborg
It would be nice if it was possible to re-order the output file based …
9:51 AM Ticket #1194 (Import more data from MIPs file) closed by Nicklas Nordborg
fixed: In 5657: […]
9:51 AM Changeset [5657] by Nicklas Nordborg
Fixes #1194: Import more data from MIPs file
9:09 AM Ticket #1194 (Import more data from MIPs file) created by Nicklas Nordborg
We should also import the PatientID and Provnummer columns. They …
9:06 AM Changeset [5656] by Nicklas Nordborg
References #1193: The "Map external data to releases" wizard should …
8:06 AM Changeset [5655] by Nicklas Nordborg
References #1193: The "Map external data to releases" wizard should …
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