Timeline
Nov 6, 2019:
- 1:46 PM Ticket #1200 (Release exporter changes due to Variant calling pipeline) created by
- When the Variant calling pipeline has been fully implemented (#1199), …
- 1:12 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5705: […]
- 1:12 PM Changeset [5705] by
- References #1199: Implement Variant calling pipeline Moving the 't' …
- 11:46 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5704: […]
- 11:46 AM Changeset [5704] by
- References #1199: Implement Variant calling pipeline All programs …
- 11:32 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5703: […]
- 11:32 AM Changeset [5703] by
- Refs #1029. Referral form generation updated in generation of referral …
- 11:01 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- Design update for the NordicTrip referral form generation: * …
- 9:38 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5702: […]
- 9:38 AM Changeset [5702] by
- Refs #1029. Referral form generation updated in generation of referral …
Nov 5, 2019:
- 3:17 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5701: […]
- 3:17 PM Changeset [5701] by
- References #1199: Implement Variant calling pipeline Reorganised some …
- 2:37 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5700: […]
- 2:37 PM Changeset [5700] by
- Refs #1029. Referral form generation updated to support generation of …
- 8:34 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5699: […]
- 8:34 AM Changeset [5699] by
- References #1199: Implement Variant calling pipeline Added filtering …
Nov 4, 2019:
- 1:53 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5698: […]
- 1:53 PM Changeset [5698] by
- References #1199: Implement Variant calling pipeline Added wrapper …
- 1:50 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5697: […]
- 1:50 PM Changeset [5697] by
- References #1199: Implement Variant calling pipeline Improve error …
- 1:22 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5696: […]
- 1:22 PM Changeset [5696] by
- References #1199: Implement Variant calling pipeline Added second …
- 1:08 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5695: […]
- 1:08 PM Changeset [5695] by
- Refs #1029. Referral form generation updated to store a start info …
- 11:58 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- Design update for the NordicTrip project: * 2019-10-28 it was …
Nov 1, 2019:
- 11:12 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- Design discussion: * Some design choices for referral form …
Oct 31, 2019:
- 1:40 PM Ticket #1190 (SCAN-B report) updated by
- In 5694: […]
- 1:40 PM Changeset [5694] by
- References #1190 (and #1199). Implemented a simple check for some …
Oct 30, 2019:
- 2:10 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5693: […]
- 2:10 PM Changeset [5693] by
- References #1199: Implement Variant calling pipeline Added a step …
Oct 29, 2019:
- 9:49 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5692: […]
- 9:49 AM Changeset [5692] by
- References #1199: Implement Variant calling pipeline Copy the …
Oct 28, 2019:
- 3:17 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5691: […]
- 3:17 PM Changeset [5691] by
- References #1199: Implement Variant calling pipeline Most options …
- 11:09 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5690: […]
- 11:09 AM Changeset [5690] by
- References #1199: Implement Variant calling pipeline Added call to …
Oct 25, 2019:
- 3:48 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5689: […]
- 3:48 PM Changeset [5689] by
-
Refs #1029. Updates due to version number change to "
1.6.0-dev". … - 2:45 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5688: […]
- 2:45 PM Changeset [5688] by
-
Refs #1029. Updates due to version number change to "
1.6.0b5". 1. … - 2:39 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5687: […]
- 2:39 PM Changeset [5687] by
- References #1199: Implement Variant calling pipeline Implemented …
- 2:32 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- In 5686: […]
- 2:32 PM Changeset [5686] by
- Refs #1029. MeLuDI updated to prepare for creating referral forms for …
- 11:41 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5685: […]
- 11:41 AM Changeset [5685] by
- References #1199: Implement Variant calling pipeline Added wizard for …
- 11:10 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- 11:09 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- Design update: * As the result of discussions at the …
- 10:53 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by
- Design update: * As the result of discussions at the …
- 8:56 AM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5684: […]
- 8:56 AM Changeset [5684] by
- References #1199: Implement Variant calling pipeline Added a skeleton …
Oct 22, 2019:
- 4:13 PM Ticket #1199 (Implement Variant calling pipeline) updated by
- In 5683: […]
- 4:13 PM Changeset [5683] by
- References #1199: Implement Variant calling pipeline Defined a new …
- 2:53 PM Ticket #1190 (SCAN-B report) updated by
- In 5682: […]
- 2:53 PM Changeset [5682] by
- References #1190: SCAN-B report Added plug-in configurations for the …
- 2:50 PM Ticket #1199 (Implement Variant calling pipeline) created by
- Updated description Variant calling is started from Hisat …
- 8:46 AM Changeset [5681] by
- Reggie the Snake can now be summoned.
Oct 21, 2019:
- 1:13 PM Ticket #1198 (Add support for PAD to the "Map external data" wizard) updated by
- In 5680: […]
- 1:13 PM Changeset [5680] by
- References #1198: Add support for PAD to the "Map external data" …
Oct 18, 2019:
- 1:22 PM Ticket #1198 (Add support for PAD to the "Map external data" wizard) updated by
- In 5679: […]
- 1:22 PM Changeset [5679] by
- References #1198: Add support for PAD to the "Map external data" …
- 11:30 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) updated by
- In 5678: […]
- 11:30 AM Changeset [5678] by
- References #1198: Add support for PAD to the "Map external data" …
- 10:46 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) updated by
- In 5677: […]
- 10:46 AM Changeset [5677] by
- References #1198: Add support for PAD to the "Map external data" …
- 9:42 AM Ticket #1198 (Add support for PAD to the "Map external data" wizard) created by
- When the source column contains release id values it should be …
Oct 17, 2019:
- 9:34 AM Ticket #1197 (Rounding effects may cause the mRNA protocol to incorrectly display ...) closed by
- fixed: In 5676: […]
- 9:34 AM Changeset [5676] by
- Fixes #1197: Rounding effects may cause the mRNA protocol to …
- 9:32 AM Ticket #1197 (Rounding effects may cause the mRNA protocol to incorrectly display ...) created by
- The volume to use from an RNA is calculated by using the stored values …
Oct 16, 2019:
- 2:40 PM Ticket #1196 (Incorrect specifications in the mRNA protocol) closed by
- fixed: In 5675: […]
- 2:40 PM Changeset [5675] by
- Fixes #1196: Incorrect specifications in the mRNA protocol Removed …
- 1:39 PM Ticket #1196 (Incorrect specifications in the mRNA protocol) updated by
-
I think we have to blame #1165 and [5552] where the
select_rna.js… - 9:15 AM Ticket #1196 (Incorrect specifications in the mRNA protocol) updated by
-
Milestone changed
- 9:12 AM Ticket #1196 (Incorrect specifications in the mRNA protocol) created by
- After extract an RNA comes out with concentration <10ng/µl, which …
Oct 15, 2019:
- 4:08 PM Ticket #1190 (SCAN-B report) updated by
- In 5674: […]
- 4:08 PM Changeset [5674] by
- References #1190: SCAN-B report Just added a note to remember to …
- 3:46 PM Ticket #1190 (SCAN-B report) updated by
- In 5673: […]
- 3:46 PM Changeset [5673] by
- References #1190: SCAN-B report The report combiner plug-in now …
- 2:52 PM Ticket #1190 (SCAN-B report) updated by
- In 5672: […]
- 2:52 PM Changeset [5672] by
- References #1190: SCAN-B report Added an activity log definition for …
- 1:55 PM Ticket #1190 (SCAN-B report) updated by
- In 5671: […]
- 1:55 PM Changeset [5671] by
- References #1190: SCAN-B report Renamed the "Accept" column/action in …
- 12:57 PM Ticket #1190 (SCAN-B report) updated by
- In 5670: […]
- 12:57 PM Changeset [5670] by
- References #1190: SCAN-B report Implemented support for …
- 11:58 AM Ticket #1190 (SCAN-B report) updated by
- In 5669: […]
- 11:58 AM Changeset [5669] by
- References #1190: SCAN-B report Implemented support for updating SSP …
- 9:23 AM Ticket #1186 (Implement plug-in for running Single Sample Predictor models) updated by
- In 5668: […]
- 9:23 AM Changeset [5668] by
- References #1186: Implement plug-in for running Single Sample …
- 8:30 AM Ticket #1186 (Implement plug-in for running Single Sample Predictor models) updated by
- In 5667: […]
- 8:30 AM Changeset [5667] by
- References #1186: Implement plug-in for running Single Sample …
Oct 14, 2019:
- 2:36 PM Ticket #1190 (SCAN-B report) updated by
- In 5666: […]
- 2:36 PM Changeset [5666] by
- References #1190: SCAN-B report Added a pipeline setting to the …
- 11:49 AM Ticket #1190 (SCAN-B report) updated by
- In 5665: […]
- 11:49 AM Changeset [5665] by
- References #1190: SCAN-B report Added a counter for rawbioassays …
- 9:11 AM Ticket #1190 (SCAN-B report) updated by
- In 5664: […]
- 9:11 AM Changeset [5664] by
- References #1190: SCAN-B report Added "SCANB_REPORT" as an option to …
Oct 11, 2019:
- 1:52 PM Changeset [5663] by
- Merge Reggie 4.23.2 to the the trunk.
- 1:49 PM Milestone Reggie v4.23.2 completed
- Bug fixes and enhancements for Reggie 4.23.1. Revision Log: …
- 1:48 PM PluginDownload edited by
- Released Reggie 4.23.2 (diff)
- 1:48 PM net.sf.basedb.reggie edited by
- Released Reggie 4.23.2 (diff)
- 1:44 PM Changeset [5662] by
- Tagging Reggie 4.23.2
- 1:44 PM Changeset [5661] by
- Preparing to release Reggie 4.23.2
- 1:30 PM Ticket #1193 (The "Map external data to releases" wizard should have more options) closed by
- fixed
- 1:30 PM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5660: […]
- 1:30 PM Changeset [5660] by
- References #1193: The "Map external data to releases" wizard should …
- 1:16 PM Ticket #1195 (The "Map external data to releases" wizard should have an option to ...) closed by
- fixed: In 5659: […]
- 1:16 PM Changeset [5659] by
- Fixes #1195: The "Map external data to releases" wizard should have an …
- 11:43 AM Ticket #1195 (The "Map external data to releases" wizard should have an option to ...) updated by
- In 5658: […]
- 11:43 AM Changeset [5658] by
- References #1195: The "Map external data to releases" wizard should …
- 11:04 AM Ticket #1195 (The "Map external data to releases" wizard should have an option to ...) created by
- It would be nice if it was possible to re-order the output file based …
- 9:51 AM Ticket #1194 (Import more data from MIPs file) closed by
- fixed: In 5657: […]
- 9:51 AM Changeset [5657] by
- Fixes #1194: Import more data from MIPs file
- 9:09 AM Ticket #1194 (Import more data from MIPs file) created by
-
We should also import the
PatientIDandProvnummercolumns. They … - 9:06 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5656: […]
- 9:06 AM Changeset [5656] by
- References #1193: The "Map external data to releases" wizard should …
- 8:06 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5655: […]
- 8:06 AM Changeset [5655] by
- References #1193: The "Map external data to releases" wizard should …
Oct 10, 2019:
- 1:10 PM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5654: […]
- 1:10 PM Changeset [5654] by
- References #1193: The "Map external data to releases" wizard should …
- 8:43 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5653: […]
- 8:43 AM Changeset [5653] by
- References #1193: The "Map external data to releases" wizard should …
- 8:05 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5652: […]
- 8:05 AM Changeset [5652] by
- References #1193: The "Map external data to releases" wizard should …
Oct 9, 2019:
- 1:34 PM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
- In 5651: […]
- 1:34 PM Changeset [5651] by
- References #1193: The "Map external data to releases" wizard should …
- 10:38 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
-
Milestone changed
- 8:49 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) updated by
-
Status changed
- 8:49 AM Ticket #1193 (The "Map external data to releases" wizard should have more options) created by
- The wizard currently expects that the first column contains personal …
- 8:36 AM Ticket #1190 (SCAN-B report) updated by
- In 5650: […]
- 8:36 AM Changeset [5650] by
- References #1190: SCAN-B report Linked a report template to a …
- 7:39 AM Ticket #1191 (Remove debug output from GenotypeMessage) closed by
- fixed: In 5649: […]
- 7:39 AM Changeset [5649] by
- Fixes #1191: Remove debug output from GenotypeMessage
Oct 8, 2019:
- 3:51 PM Ticket #1192 (The "Flag RNA" option should not be checked by default in legacy ...) closed by
- fixed: In 5648: […]
- 3:51 PM Changeset [5648] by
- Fixes #1192: The "Flag RNA" option should not be checked by default in …
- 2:05 PM Ticket #1192 (The "Flag RNA" option should not be checked by default in legacy ...) created by
- Jobs that fail due to some unexpected crash should not cause the "Flag …
- 1:39 PM Ticket #1190 (SCAN-B report) updated by
- In 5647: […]
- 1:39 PM Changeset [5647] by
- References #1190: SCAN-B report Added first version of a SCAN-B …
- 1:32 PM Ticket #1190 (SCAN-B report) updated by
-
Status changed
- 9:39 AM Ticket #1191 (Remove debug output from GenotypeMessage) updated by
-
Milestone changed
- 9:36 AM Ticket #1191 (Remove debug output from GenotypeMessage) created by
-
The call to
System.out.println()at … - 8:03 AM Ticket #1190 (SCAN-B report) created by
- A new report, the "SCAN-B report" should be implemented. It will …
Oct 7, 2019:
- 2:18 PM Ticket #1188 (Register destruction of stored samples and extracts in the "Retraction ...) closed by
- fixed
- 1:32 PM Ticket #1188 (Register destruction of stored samples and extracts in the "Retraction ...) updated by
- In 5646: […]
- 1:31 PM Changeset [5646] by
- References #1188: Register destruction of stored samples and extracts …
- 11:20 AM Ticket #1189 (The retraction destruction wizard try to connect to the file server ...) closed by
- fixed: In 5645: […]
- 11:20 AM Changeset [5645] by
- Fixes #1189: The retraction destruction wizard try to connect to the …
- 11:07 AM Ticket #1189 (The retraction destruction wizard try to connect to the file server ...) created by
- When running the retraction wizard for final deletion of items there …
- 9:57 AM Ticket #1188 (Register destruction of stored samples and extracts in the "Retraction ...) updated by
- In 5644: […]
- 9:57 AM Changeset [5644] by
- References #1188: Register destruction of stored samples and extracts …
- 9:36 AM Ticket #1188 (Register destruction of stored samples and extracts in the "Retraction ...) updated by
- In 5643: […]
- 9:36 AM Changeset [5643] by
- References #1188: Register destruction of stored samples and extracts …
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