Timeline
Sep 16, 2019:
- 2:53 PM Ticket #1177 (Remove <add-read-groups-options> from reggie-config.xml) created by
- This configuration option is not needed since the …
- 9:10 AM Changeset [5609] by
- Changes for future release Reggie 4.24
- 9:09 AM Milestone Reggie v4.23 completed
- See Reggie extension page for more information.
- 9:09 AM Ticket #1146 (Demux for the MIPs pipeline) closed by
- fixed
- 9:08 AM PluginDownload edited by
- Released Reggie 4.23 (diff)
- 9:07 AM net.sf.basedb.reggie edited by
- Released Reggie 4.23 (diff)
- 9:03 AM Changeset [5608] by
- Tagging Reggie 4.23
- 9:03 AM Changeset [5607] by
- Preparing to release Reggie 4.23
Sep 13, 2019:
- 3:03 PM Changeset [5606] by
- References #1146: Demux for the MIPs pipeline Changed default 'smp' …
- 1:11 PM Ticket #1176 (The keep-session-alive functionality should not hide current messages) closed by
- fixed: In 5605: […]
- 1:11 PM Changeset [5605] by
- Fixes #1176: The keep-session-alive functionality should not hide …
- 9:53 AM net.sf.basedb.reggie/notes423 edited by
- Renamed MIPS_Pool to MIPS_Panel (diff)
- 9:51 AM Ticket #1176 (The keep-session-alive functionality should not hide current messages) created by
- I noted a problem with the MIPs plate/aliquot importer. If there are …
- 9:39 AM Changeset [5604] by
- References #1136: MIPs plate lab protocol Changes related to the …
- 9:27 AM Changeset [5603] by
- References #1135: Design MIPs plate wizard Changes related to the …
- 9:12 AM Changeset [5602] by
- References #1129: DNA pre-normalization Changes related to the …
- 8:58 AM Changeset [5601] by
- References #1130: Import wizard for MIPs aliquot plates Changed the …
- 8:52 AM Changeset [5600] by
- References #1130: Import wizard for MIPs aliquot plates Changed the …
- 8:49 AM Changeset [5599] by
- References #1130: Import wizard for MIPs aliquot plates Changed …
Sep 11, 2019:
- 3:07 PM Changeset [5598] by
- Removing unused import.
- 2:29 PM Ticket #1175 (Temporary R working files may be left in open state) closed by
- fixed: In 5597: […]
- 2:29 PM Changeset [5597] by
- Fixes #1175: Temporary R working files may be left in open state
- 2:26 PM Ticket #1175 (Temporary R working files may be left in open state) created by
-
Assuming that the
closeInparameter is true andoverwriteis … - 2:14 PM net.sf.basedb.reggie/notes423 edited by
- Added information about giving read access to data files for external … (diff)
- 2:07 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) closed by
- fixed
- 1:49 PM Changeset [5596] by
- References #1174: Permission on files created by secondary analysis …
- 1:32 PM Changeset [5595] by
- References #1174: Permission on files created by secondary analysis …
- 12:52 PM Changeset [5594] by
- References #1174: Permission on files created by secondary analysis …
- 11:14 AM Changeset [5593] by
- References #1174: Permission on files created by secondary analysis …
- 9:31 AM Ticket #1174 (Permission on files created by secondary analysis for external samples) created by
- Files that are created as part of secondary analysis are usually …
Sep 10, 2019:
- 1:33 PM Tickets #1159,1157,1172 batch updated by
- fixed
- 11:05 AM net.sf.basedb.reggie/notes423 edited by
- Added more details about barcode template bioplates (diff)
Sep 6, 2019:
- 10:44 AM net.sf.basedb.reggie/notes423 edited by
- Added note about sequence order for the second barcode read (diff)
- 10:39 AM Changeset [5592] by
- References #1146: Demux for the MIPs pipeline Implemented support for …
Sep 4, 2019:
- 2:35 PM net.sf.basedb.reggie/notes423 edited by
- Added note about updating BASE and about the DNANormalization protocol (diff)
- 2:22 PM Changeset [5591] by
- References #1129: DNA pre-normalization The DNA/RNA/Flowthrough …
- 9:26 AM Changeset [5590] by
- References #1131: Switch to BASE 3.15 Switched to BASE 3.15.2 since …
- 9:00 AM net.sf.basedb.reggie edited by
- Added a row for Reggie 4.23 to the download table to make it easier to … (diff)
- 8:58 AM net.sf.basedb.reggie/notes423 edited by
- More update instructions (diff)
- 8:09 AM Changeset [5589] by
- References #1146: Demux for the MIPs pipeline Added fqpaste.pl to the …
Aug 30, 2019:
- 1:51 PM Changeset [5588] by
- References #1146: Demux for the MIPs pipeline The "read group" file …
- 11:31 AM Changeset [5587] by
- References #1146: Demux for the MIPs pipeline Now generates a "read …
Aug 29, 2019:
- 1:52 PM Changeset [5586] by
- References #1146: Demux for the MIPs pipeline Changes the MIPs demux …
Aug 26, 2019:
- 2:19 PM Changeset [5585] by
- References #1146: Demux for the MIPs pipeline Allow barcode names to …
- 2:16 PM Changeset [5584] by
- References #1161: Update picard to 2.20 If we set the …
Aug 21, 2019:
- 2:44 PM Ticket #1173 (Link a single <host> entry to more than one OpenGrid cluster) closed by
- fixed: In 5583: […]
- 2:44 PM Changeset [5583] by
- Fixes #1173: Link a single <host> entry to more than one OpenGrid? cluster
- 1:44 PM Ticket #1173 (Link a single <host> entry to more than one OpenGrid cluster) created by
-
In
reggie-config.xmla<host>entry is linked to an OpenGrid … - 1:04 PM Changeset [5582] by
-
References #1146 and #1142. Changed the
MIPsSecondaryAnalysisrole … - 9:07 AM Changeset [5581] by
- References #1172: The message in the "Secondary analysis cleanup" …
Aug 20, 2019:
- 2:44 PM Ticket #1172 (The message in the "Secondary analysis cleanup" wizard is confusing) created by
- When entering the "Secondary analysis cleanup" wizard it will make a …
- 9:48 AM Changeset [5580] by
- References #1132: Implement an "Activity log" Added name of pipeline …
- 9:22 AM Ticket #1171 (Hisat alignment stops without error if the genotype VCF file can't be ...) closed by
- fixed: In 5579: […]
- 9:22 AM Changeset [5579] by
- Fixes #1171: Hisat alignment stops without error if the genotype VCF …
Aug 19, 2019:
- 3:16 PM Ticket #1171 (Hisat alignment stops without error if the genotype VCF file can't be ...) created by
- After a Hisat alignment job has been completed some of the data files …
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