Timeline
Sep 11, 2019:
- 3:07 PM Changeset [5598] by
- Removing unused import.
- 2:29 PM Ticket #1175 (Temporary R working files may be left in open state) closed by
- fixed: In 5597: […]
- 2:29 PM Changeset [5597] by
- Fixes #1175: Temporary R working files may be left in open state
- 2:26 PM Ticket #1175 (Temporary R working files may be left in open state) created by
-
Assuming that the
closeInparameter is true andoverwriteis … - 2:14 PM net.sf.basedb.reggie/notes423 edited by
- Added information about giving read access to data files for external … (diff)
- 2:07 PM Ticket #1174 (Permission on files created by secondary analysis for external samples) closed by
- fixed
- 1:49 PM Changeset [5596] by
- References #1174: Permission on files created by secondary analysis …
- 1:32 PM Changeset [5595] by
- References #1174: Permission on files created by secondary analysis …
- 12:52 PM Changeset [5594] by
- References #1174: Permission on files created by secondary analysis …
- 11:14 AM Changeset [5593] by
- References #1174: Permission on files created by secondary analysis …
- 9:31 AM Ticket #1174 (Permission on files created by secondary analysis for external samples) created by
- Files that are created as part of secondary analysis are usually …
Sep 10, 2019:
- 1:33 PM Tickets #1159,1157,1172 batch updated by
- fixed
- 11:05 AM net.sf.basedb.reggie/notes423 edited by
- Added more details about barcode template bioplates (diff)
Sep 6, 2019:
- 10:44 AM net.sf.basedb.reggie/notes423 edited by
- Added note about sequence order for the second barcode read (diff)
- 10:39 AM Changeset [5592] by
- References #1146: Demux for the MIPs pipeline Implemented support for …
Sep 4, 2019:
- 2:35 PM net.sf.basedb.reggie/notes423 edited by
- Added note about updating BASE and about the DNANormalization protocol (diff)
- 2:22 PM Changeset [5591] by
- References #1129: DNA pre-normalization The DNA/RNA/Flowthrough …
- 9:26 AM Changeset [5590] by
- References #1131: Switch to BASE 3.15 Switched to BASE 3.15.2 since …
- 9:00 AM net.sf.basedb.reggie edited by
- Added a row for Reggie 4.23 to the download table to make it easier to … (diff)
- 8:58 AM net.sf.basedb.reggie/notes423 edited by
- More update instructions (diff)
- 8:09 AM Changeset [5589] by
- References #1146: Demux for the MIPs pipeline Added fqpaste.pl to the …
Aug 30, 2019:
- 1:51 PM Changeset [5588] by
- References #1146: Demux for the MIPs pipeline The "read group" file …
- 11:31 AM Changeset [5587] by
- References #1146: Demux for the MIPs pipeline Now generates a "read …
Aug 29, 2019:
- 1:52 PM Changeset [5586] by
- References #1146: Demux for the MIPs pipeline Changes the MIPs demux …
Aug 26, 2019:
- 2:19 PM Changeset [5585] by
- References #1146: Demux for the MIPs pipeline Allow barcode names to …
- 2:16 PM Changeset [5584] by
- References #1161: Update picard to 2.20 If we set the …
Aug 21, 2019:
- 2:44 PM Ticket #1173 (Link a single <host> entry to more than one OpenGrid cluster) closed by
- fixed: In 5583: […]
- 2:44 PM Changeset [5583] by
- Fixes #1173: Link a single <host> entry to more than one OpenGrid? cluster
- 1:44 PM Ticket #1173 (Link a single <host> entry to more than one OpenGrid cluster) created by
-
In
reggie-config.xmla<host>entry is linked to an OpenGrid … - 1:04 PM Changeset [5582] by
-
References #1146 and #1142. Changed the
MIPsSecondaryAnalysisrole … - 9:07 AM Changeset [5581] by
- References #1172: The message in the "Secondary analysis cleanup" …
Aug 20, 2019:
- 2:44 PM Ticket #1172 (The message in the "Secondary analysis cleanup" wizard is confusing) created by
- When entering the "Secondary analysis cleanup" wizard it will make a …
- 9:48 AM Changeset [5580] by
- References #1132: Implement an "Activity log" Added name of pipeline …
- 9:22 AM Ticket #1171 (Hisat alignment stops without error if the genotype VCF file can't be ...) closed by
- fixed: In 5579: […]
- 9:22 AM Changeset [5579] by
- Fixes #1171: Hisat alignment stops without error if the genotype VCF …
Aug 19, 2019:
- 3:16 PM Ticket #1171 (Hisat alignment stops without error if the genotype VCF file can't be ...) created by
- After a Hisat alignment job has been completed some of the data files …
Aug 16, 2019:
- 11:39 AM Ticket #1170 (The private-key file of a file-server is ignored in the installation ...) closed by
- fixed: In 5578: […]
- 11:39 AM Changeset [5578] by
- Fixes #1170: The private-key file of a file-server is ignored in the …
- 11:38 AM Ticket #1169 (The private-key file of a file-server is ignored in the installation ...) closed by
- fixed: In 5577: […]
- 11:38 AM Changeset [5577] by
- Fixes #1169: The private-key file of a file-server is ignored in the …
- 9:54 AM Ticket #1170 (The private-key file of a file-server is ignored in the installation ...) created by
- Same as #1169.
- 9:04 AM Ticket #1169 (The private-key file of a file-server is ignored in the installation ...) created by
- A file-server item in BASE can be configured in various ways. The …
- 8:25 AM Changeset [5576] by
- References #1159: Release exporter changes due to MIPs pipeline …
Aug 15, 2019:
- 11:19 AM WikiStart edited by
- (diff)
- 9:22 AM Changeset [5575] by
- Preparing for future release Relax 1.6
- 9:21 AM Milestone Relax v1.5 completed
- See Relax extension page for more information.
- 9:19 AM PluginDownload edited by
- Released Relax 1.5 (diff)
- 9:18 AM net.sf.basedb.relax edited by
- Released Relax 1.5 (diff)
- 9:14 AM Changeset [5574] by
- Tagging Relax 1.5
- 9:14 AM Changeset [5573] by
- Preparing to release Relax 1.5
- 8:21 AM Changeset [5572] by
- Preparing for future release LabEnv? 1.8
- 8:19 AM PluginDownload edited by
- Released LabEnv? 1.7 (diff)
- 8:18 AM net.sf.basedb.labenv edited by
- Released LabEnv? 1.7 (diff)
- 8:14 AM Changeset [5571] by
- Tagging LabEnv? 1.7
- 8:14 AM Changeset [5570] by
- Preparing to release LabEnv? 1.7
- 8:10 AM Ticket #1156 (Switch to Java 11 and BASE 3.15) closed by
- fixed
- 8:03 AM Changeset [5569] by
- Preparing for future release YubiKey? 1.7
- 8:01 AM Milestone YubiKey v1.6 completed
- See YubiKey authentication extension for …
- 8:01 AM PluginDownload edited by
- Released YubiKey? 1.6 (diff)
- 8:00 AM net.sf.basedb.yubikey edited by
- Released YubiKey? 1.6 (diff)
- 7:56 AM Changeset [5568] by
- Tagging YubiKey? 1.6
- 7:55 AM Changeset [5567] by
- Preparing to release YubiKey? 1.6
Aug 14, 2019:
- 2:46 PM Changeset [5566] by
- Preparing for future release Open Grid Scheduler extension 1.4
- 2:44 PM Milestone Open Grid Scheduler service v1.3 completed
- See the [wiki:net.sf.basedb.opengrid Open Grid Scheduler extension …
- 2:42 PM PluginDownload edited by
- Released Open Grid Scheduler extension 1.3 (diff)
- 2:41 PM net.sf.basedb.opengrid edited by
- Released Open Grid Scheduler extension 1.3 (diff)
- 2:36 PM Changeset [5565] by
- Tagging Open Grid Scheduler extension 1.3
- 2:35 PM Changeset [5564] by
- Preparing to release Open Grid Scheduler extension 1.3
- 2:19 PM Changeset [5563] by
- Preparing for future release OTP login 1.4
- 2:17 PM Milestone OTP login v1.3 completed
- See OTP login extension for more information.
- 2:16 PM PluginDownload edited by
- Released OTP login 1.3 (diff)
- 2:16 PM net.sf.basedb.otp edited by
- Released OTP login 1.3 (diff)
- 2:11 PM Changeset [5562] by
- Tagging OTP login 1.3
- 2:11 PM Changeset [5561] by
- Preparing to release OTP login 1.3
- 1:25 PM Changeset [5560] by
- Preparing for future release External files support 1.6
- 1:20 PM Milestone External files support 1.5 completed
- An extension package containing support for additional protocols to …
- 1:20 PM PluginDownload edited by
- Released External files support 1.5 (diff)
- 1:19 PM net.sf.basedb.xfiles edited by
- Released External files support 1.5 (diff)
- 1:16 PM Changeset [5559] by
- Tagging External files support 1.5
- 1:16 PM Changeset [5558] by
- Preparing to release External files support 1.5
Aug 13, 2019:
- 1:14 PM Ticket #1126 (Cohort exporter should support exporting to Excel file) closed by
- fixed: Seems to be working without any problems.
- 1:14 PM Ticket #1168 (Safer debugging of import/export plug-in) closed by
- fixed: In 5557: […]
- 1:14 PM Changeset [5557] by
- Fixes #1168: Safer debugging of import/export plug-in Also …
- 11:40 AM Ticket #1167 (Safer debugging of release exporter plug-in) closed by
- fixed: In [5555] Fixes #1167: Safer debugging of release exporter plug-in …
- 11:37 AM Changeset [5556] by
- References #1168: Safer debugging of import/export plug-in …
- 10:22 AM Changeset [5555] by
- Fixes #11169: Safer debugging of release exporter plug-in The plug-in …
- 8:55 AM Ticket #1168 (Safer debugging of import/export plug-in) created by
- Same as #1167 for the following plug-ins: * Release importer plug-in …
- 8:52 AM Ticket #1167 (Safer debugging of release exporter plug-in) created by
- When developing the "Release exporter" plug-in it is usually necessary …
- 8:21 AM Ticket #1166 (Add configuration setting for disabling counting stray folders) closed by
- fixed: In 5554: […]
- 8:21 AM Changeset [5554] by
- Fixes #1166: Add configuration setting for disabling counting stray folders
Aug 12, 2019:
- 2:10 PM Ticket #1166 (Add configuration setting for disabling counting stray folders) created by
- The counter service includes a function for checking and counting if …
- 1:40 PM Ticket #1165 (Code for checking if a sample is external or not is incorrect) closed by
- fixed: In 5553: […]
- 1:40 PM Changeset [5553] by
- Fixes #1165: Code for checking if a sample is external or not is …
- 11:18 AM Changeset [5552] by
- References #1165: Code for checking if a sample is external or not is …
- 8:41 AM Ticket #1165 (Code for checking if a sample is external or not is incorrect) created by
- There are various places in the codebase of Reggie that checks if an …
- 8:36 AM Changeset [5551] by
- References #1146: Demux for the MIPs pipeline Updated the "Confirm …
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