Timeline
Jul 5, 2019:
- 1:36 PM Changeset [5541] by
- Refs #1029. FFPE block registration updated in step 3 with support for …
Jul 4, 2019:
- 1:51 PM Changeset [5540] by
-
Refs #1029. Updates due to update of Java version from to
1.8to …
Jun 28, 2019:
- 2:35 PM Ticket #1160 (Investigate changes in Picard since our last modified version) closed by
- fixed
- 2:35 PM Ticket #1161 (Update picard to 2.20) closed by
- fixed
- 2:33 PM Changeset [5539] by
- References #1146: Demux for the MIPs pipeline Added support for …
- 2:28 PM Changeset [5538] by
- References #1146: Demux for the MIPs pipeline Demux parameters has …
- 10:51 AM Changeset [5537] by
- References #1161: Update picard to 2.20 Updated MarkDuplicates step …
- 8:47 AM Changeset [5536] by
- References #1161: Update picard to 2.20 Updated the RNA-seq demux to …
Jun 27, 2019:
- 2:15 PM Changeset [5535] by
- References #1161: Update picard to 2.20 Removed all …
- 2:00 PM Changeset [5534] by
- References #1161 and #1146. The MIPs demux is now running with picard …
- 12:43 PM Ticket #1163 (Start demux wizard may display the same sequencing run multiple times ...) closed by
- fixed: In 5533: […]
- 12:43 PM Changeset [5533] by
- Fixes #1163: Start demux wizard may display the same sequencing run …
- 12:41 PM Ticket #1163 (Start demux wizard may display the same sequencing run multiple times ...) created by
- This seems to happen if a sequencing run has already been demuxed more …
- 11:24 AM Changeset [5532] by
- References #1162: Add support for using 'M' in the read-string when …
- 11:00 AM Changeset [5531] by
- References #1161: Update picard to 2.20 Implemented a method for …
- 9:43 AM Changeset [5530] by
- References #1162: Add support for using 'M' in the read-string when …
- 9:34 AM Changeset [5529] by
-
References #1161: Update picard to 2.20
Adding the
picard2wrapper … - 9:33 AM Changeset [5528] by
- References #1161: Update picard to 2.20 Updated to the new command …
- 9:08 AM Changeset [5527] by
- References #1161: Update picard to 2.20 Changed the default …
- 7:49 AM Ticket #1162 (Add support for using 'M' in the read-string when demuxing) created by
- This is needed to handle UMI:s in the MIPs pipeline. It requires the …
- 7:45 AM Ticket #1161 (Update picard to 2.20) created by
- http://broadinstitute.github.io/picard/ I think we should manage …
Jun 26, 2019:
- 9:29 AM Ticket #1160 (Investigate changes in Picard since our last modified version) created by
- We are using a modified version of Picard for demuxing. It is base on …
Jun 25, 2019:
- 9:39 AM Ticket #1159 (Release exporter changes due to MIPs pipeline) created by
- The first task is to make sure that existing items in the RNA-seq …
- 9:28 AM Tickets #1130,1135,1136,1137,1138,1142 batch updated by
- fixed
- 9:25 AM Ticket #1145 (Location of data for external RNA) closed by
- fixed
- 9:25 AM Ticket #1129 (DNA pre-normalization) closed by
- fixed
- 9:24 AM Ticket #1133 (Re-organize the Reggie front page) closed by
- fixed
- 9:05 AM Changeset [5526] by
- References #1130, #1135, #1142, #1146. Fixing and getting rid of some …
- 7:54 AM Changeset [5525] by
- References #1154: Switch to Java 11 and BASE 3.15 Added information …
Jun 24, 2019:
- 2:38 PM Ticket #1158 (FASTQ files for external samples should not have the prefix in their names) closed by
- fixed: In 5524: […]
- 2:38 PM Changeset [5524] by
- Fixes #1158: FASTQ files for external samples should not have the …
- 11:39 AM Ticket #1158 (FASTQ files for external samples should not have the prefix in their names) created by
- External samples typically have a prefix followed by and underscore …
- 11:27 AM Changeset [5523] by
- References #1145: Location of data for external RNA The code for …
- 9:29 AM Changeset [5522] by
- References #1157: Case summary changes due to MIPs pipeline Added …
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