Timeline



May 30, 2018:

5:12 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design discussion - Icon links to case summary from BASE pages: * In …

May 25, 2018:

8:44 AM Changeset [4826] by Nicklas Nordborg
Changes for future release Reggie 4.19
8:43 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.18 (diff)
8:42 AM Milestone Reggie v4.18 completed
See Reggie extension page for more information.
8:41 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.18 (diff)
8:40 AM reggie-4.18.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.18
8:38 AM Changeset [4825] by Nicklas Nordborg
Tagging Reggie 4.18
8:38 AM Changeset [4824] by Nicklas Nordborg
Preparing to release Reggie 4.18.
8:34 AM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
Description changed
8:34 AM Ticket #1054 (Even more functionality in the Flagged alignment wizard) created by Nicklas Nordborg
See #1050. * [Done] Implement possibility to flag and add/modify …
8:33 AM Ticket #1050 (More functionality in the Flagged alignment wizard) closed by Nicklas Nordborg
fixed
8:32 AM Ticket #1049 (Improvments to the FrozenTissueDate wizards) closed by Nicklas Nordborg
fixed

May 24, 2018:

1:22 PM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
(In [4823]) References #1050: More functionality in the Flagged …
1:22 PM Changeset [4823] by Nicklas Nordborg
References #1050: More functionality in the Flagged alignment wizard …

May 23, 2018:

3:18 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4822]) Refs #1029. MeLuDI updated with new configuration …
3:18 PM Changeset [4822] by olle
Refs #1029. MeLuDI updated with new configuration variables …
1:36 PM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
(In [4821]) References #1050: More functionality in the Flagged …
1:36 PM Changeset [4821] by Nicklas Nordborg
References #1050: More functionality in the Flagged alignment wizard …

May 22, 2018:

2:42 PM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
(In [4820]) References #1050: More functionality in the Flagged …
2:42 PM Changeset [4820] by Nicklas Nordborg
References #1050: More functionality in the Flagged alignment wizard …
10:38 AM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
(In [4819]) References #1050: More functionality in the Flagged …
10:38 AM Changeset [4819] by Nicklas Nordborg
References #1050: More functionality in the Flagged alignment wizard …
9:28 AM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
Description changed
9:25 AM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
(In [4818]) References #1050: More functionality in the Flagged …
9:25 AM Changeset [4818] by Nicklas Nordborg
References #1050: More functionality in the Flagged alignment wizard …

May 21, 2018:

9:38 AM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
(In [4817]) References #1050: More functionality in the Flagged …
9:38 AM Changeset [4817] by Nicklas Nordborg
References #1050: More functionality in the Flagged alignment wizard …
8:43 AM Ticket #1053 (The "High HET" filter in the "Flagged alignments" wizard should load ...) closed by Nicklas Nordborg
fixed: (In [4816]) Fixes #1053: The "High HET" filter in the "Flagged …
8:43 AM Changeset [4816] by Nicklas Nordborg
Fixes #1053: The "High HET" filter in the "Flagged alignments" wizard …
8:41 AM Ticket #1053 (The "High HET" filter in the "Flagged alignments" wizard should load ...) created by Nicklas Nordborg
When the "High HET" filter is selected in the "Flagged alignments" …

May 18, 2018:

1:20 PM Ticket #1050 (More functionality in the Flagged alignment wizard) updated by Nicklas Nordborg
Status changed

May 17, 2018:

2:52 PM Ticket #1052 (The FrozenTissueDate importer fails if ProvID is the first or last column) closed by Nicklas Nordborg
fixed: (In [4815]) Fixes #1052: The FrozenTissueDate importer fails if ProvID …
2:52 PM Changeset [4815] by Nicklas Nordborg
Fixes #1052: The FrozenTissueDate importer fails if ProvID is the …
2:41 PM Ticket #1052 (The FrozenTissueDate importer fails if ProvID is the first or last column) created by Nicklas Nordborg
Error message: […] The reason is that the wizard is actually …

May 16, 2018:

1:29 PM Ticket #1051 (The Release exporter plug-in should assist when creating zip files ...) closed by Nicklas Nordborg
fixed: (In [4814]) Fixes #1051: The Release exporter plug-in should assist …
1:29 PM Changeset [4814] by Nicklas Nordborg
Fixes #1051: The Release exporter plug-in should assist when creating …
1:23 PM Ticket #1051 (The Release exporter plug-in should assist when creating zip files ...) updated by Nicklas Nordborg
Description, Summary changed
8:38 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4813]) Refs #1029. Updates due to version number change to …
8:38 AM Changeset [4813] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:35 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4812]) Refs #1029. Updates due to version number change to …
8:35 AM Changeset [4812] by olle
Refs #1029. Updates due to version number change to "1.6.0a3". 1. …
8:11 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4811]) Refs #1029. Consent registration updated when creating a …
8:11 AM Changeset [4811] by olle
Refs #1029. Consent registration updated when creating a new case item …

May 15, 2018:

3:42 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4810]) Refs #1029. Referral form generator updated to create a …
3:42 PM Changeset [4810] by olle
Refs #1029. Referral form generator updated to create a fixed number …
3:12 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4809]) Refs #1029. Referral form generator updated for new form …
3:12 PM Changeset [4809] by olle
Refs #1029. Referral form generator updated for new form versions. …
2:41 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update for referral generation: * Requests have been made …
2:01 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design note: * The update in change set …
1:48 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4808]) Refs #1029. Referral generation updated regarding in what …
1:48 PM Changeset [4808] by olle
Refs #1029. Referral generation updated regarding in what BASE …
12:49 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4807]) Refs #1029. MeLuDI updated with new configuration flags …
12:49 PM Changeset [4807] by olle
Refs #1029. MeLuDI updated with new configuration flags …

May 14, 2018:

12:56 PM Ticket #1049 (Improvments to the FrozenTissueDate wizards) updated by Nicklas Nordborg
(In [4806]) References #1049: Improvments to the FrozenTissueDate
12:55 PM Changeset [4806] by Nicklas Nordborg
References #1049: Improvments to the FrozenTissueDate wizards The …
8:58 AM Ticket #1049 (Improvments to the FrozenTissueDate wizards) updated by Nicklas Nordborg
(In [4805]) References #1049: Improvments to the FrozenTissueDate
8:58 AM Changeset [4805] by Nicklas Nordborg
References #1049: Improvments to the FrozenTissueDate wizards Added …
8:44 AM Ticket #1049 (Improvments to the FrozenTissueDate wizards) updated by Nicklas Nordborg
(In [4804]) References #1049: Improvments to the FrozenTissueDate
8:44 AM Changeset [4804] by Nicklas Nordborg
References #1049: Improvments to the FrozenTissueDate wizards …
8:30 AM Ticket #1049 (Improvments to the FrozenTissueDate wizards) updated by Nicklas Nordborg
Status changed
8:30 AM Ticket #1047 (HaplotypeCaller should be wrapped with stdwrap.sh) closed by Nicklas Nordborg
fixed: (In [4803]) Fixes #1047: HaplotypeCaller should be wrapped with stdwrap.sh
8:30 AM Changeset [4803] by Nicklas Nordborg
Fixes #1047: HaplotypeCaller should be wrapped with stdwrap.sh

May 9, 2018:

1:34 PM Ticket #1051 (The Release exporter plug-in should assist when creating zip files ...) created by Nicklas Nordborg
Some of the data files that belong to Cufflinks and StringTie raw …
10:50 AM Ticket #1050 (More functionality in the Flagged alignment wizard) created by Nicklas Nordborg
See #1046. It is currently a read-only wizard that can be used for …
10:45 AM Changeset [4802] by Nicklas Nordborg
Changes for future release Reggie 4.18
10:44 AM Tickets #1049,​1047 batch updated by Nicklas Nordborg
Milestone changed
Ticket retargeted after milestone closed
10:44 AM Milestone Reggie v4.17 completed
See Reggie extension page for more information.
10:43 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.17 (diff)
10:43 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.17 (diff)
10:41 AM reggie-4.17.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.17
10:40 AM Ticket #1046 (Flagged alignments wizard) closed by Nicklas Nordborg
fixed: Closing this ticket now since we believe the wizard to be usable for …
10:37 AM Changeset [4801] by Nicklas Nordborg
Tagging Reggie 4.17
10:36 AM Changeset [4800] by Nicklas Nordborg
Preparing to release Reggie 4.17.
10:33 AM Ticket #1046 (Flagged alignments wizard) updated by Nicklas Nordborg
(In [4799]) References #1046: Flagged alignments wizard More minor …
10:33 AM Changeset [4799] by Nicklas Nordborg
References #1046: Flagged alignments wizard More minor changes: * …

May 8, 2018:

3:32 PM Ticket #1045 (Display FrozenTissueDate annotation in case summary) closed by Nicklas Nordborg
fixed: (In [4798]) Fixes #1045: Display FrozenTissueDate annotation in case …
3:32 PM Changeset [4798] by Nicklas Nordborg
Fixes #1045: Display FrozenTissueDate annotation in case summary …
3:24 PM Ticket #1045 (Display FrozenTissueDate annotation in case summary) updated by Nicklas Nordborg
Status changed
3:22 PM Ticket #1046 (Flagged alignments wizard) updated by Nicklas Nordborg
(In [4797]) References #1046: Flagged alignments wizard Several …
3:22 PM Changeset [4797] by Nicklas Nordborg
References #1046: Flagged alignments wizard Several updates to the …
9:28 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4796]) Refs #1029. Case summary for active project SCAN-B-rec …
9:28 AM Changeset [4796] by olle
Refs #1029. Case summary for active project SCAN-B-rec updated by …
7:54 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4795]) Refs #1029. Support for blood items added, based on that …
7:54 AM Changeset [4795] by olle
Refs #1029. Support for blood items added, based on that used in …

May 7, 2018:

2:25 PM Ticket #1046 (Flagged alignments wizard) updated by Nicklas Nordborg
(In [4794]) References #1046: Flagged alignments wizard The first …
2:25 PM Changeset [4794] by Nicklas Nordborg
References #1046: Flagged alignments wizard The first prototype of …
2:19 PM Ticket #1046 (Flagged alignments wizard) updated by Nicklas Nordborg
Description changed

May 4, 2018:

3:52 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4793]) Refs #1029. Updates due to version number change to …
3:52 PM Changeset [4793] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
3:47 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4792]) Refs #1029. Updates due to version number change to …
3:47 PM Changeset [4792] by olle
Refs #1029. Updates due to version number change to "1.6.0a2". 1. …
3:35 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4791]) Refs #1029. MeLuDI updated in sample registration JSP …
3:35 PM Changeset [4791] by olle
Refs #1029. MeLuDI updated in sample registration JSP files by adding …
3:29 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4790]) Refs #1029. Consent registration for active project …
3:29 PM Changeset [4790] by olle
Refs #1029. Consent registration for active project SCAN-B-rec updated …
8:13 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4789]) Refs #1029. Consent registration for active project …
8:13 AM Changeset [4789] by olle
Refs #1029. Consent registration for active project SCAN-B-rec updated …

May 2, 2018:

9:40 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4788]) Refs #1029. Case summary for active project SCAN-B-rec …
9:40 AM Changeset [4788] by olle
Refs #1029. Case summary for active project SCAN-B-rec updated to use …
9:16 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4787]) Refs #1029. Support for a pre-entry of a PAD number …
9:16 AM Changeset [4787] by olle
Refs #1029. Support for a pre-entry of a PAD number coupled to case …
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