Timeline



May 17, 2018:

2:52 PM Ticket #1052 (The FrozenTissueDate importer fails if ProvID is the first or last column) closed by Nicklas Nordborg
fixed: (In [4815]) Fixes #1052: The FrozenTissueDate? importer fails if ProvID …
2:52 PM Changeset [4815] by Nicklas Nordborg
Fixes #1052: The FrozenTissueDate? importer fails if ProvID is the …
2:41 PM Ticket #1052 (The FrozenTissueDate importer fails if ProvID is the first or last column) created by Nicklas Nordborg
Error message: […] The reason is that the wizard is actually …

May 16, 2018:

1:29 PM Ticket #1051 (The Release exporter plug-in should assist when creating zip files ...) closed by Nicklas Nordborg
fixed: (In [4814]) Fixes #1051: The Release exporter plug-in should assist …
1:29 PM Changeset [4814] by Nicklas Nordborg
Fixes #1051: The Release exporter plug-in should assist when creating …
8:38 AM Changeset [4813] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:35 AM Changeset [4812] by olle
Refs #1029. Updates due to version number change to "1.6.0a3". 1. …
8:11 AM Changeset [4811] by olle
Refs #1029. Consent registration updated when creating a new case item …

May 15, 2018:

3:42 PM Changeset [4810] by olle
Refs #1029. Referral form generator updated to create a fixed number …
3:12 PM Changeset [4809] by olle
Refs #1029. Referral form generator updated for new form versions. …
1:48 PM Changeset [4808] by olle
Refs #1029. Referral generation updated regarding in what BASE …
12:49 PM Changeset [4807] by olle
Refs #1029. MeLuDI updated with new configuration flags …

May 14, 2018:

12:55 PM Changeset [4806] by Nicklas Nordborg
References #1049: Improvments to the FrozenTissueDate? wizards The …
8:58 AM Changeset [4805] by Nicklas Nordborg
References #1049: Improvments to the FrozenTissueDate? wizards Added …
8:44 AM Changeset [4804] by Nicklas Nordborg
References #1049: Improvments to the FrozenTissueDate? wizards …
8:30 AM Ticket #1047 (HaplotypeCaller should be wrapped with stdwrap.sh) closed by Nicklas Nordborg
fixed: (In [4803]) Fixes #1047: HaplotypeCaller? should be wrapped with stdwrap.sh
8:30 AM Changeset [4803] by Nicklas Nordborg
Fixes #1047: HaplotypeCaller? should be wrapped with stdwrap.sh

May 9, 2018:

1:34 PM Ticket #1051 (The Release exporter plug-in should assist when creating zip files ...) created by Nicklas Nordborg
Some of the data files that belong to Cufflinks and StringTie raw …
10:50 AM Ticket #1050 (More functionality in the Flagged alignment wizard) created by Nicklas Nordborg
See #1046. It is currently a read-only wizard that can be used for …
10:45 AM Changeset [4802] by Nicklas Nordborg
Changes for future release Reggie 4.18
10:44 AM Milestone Reggie v4.17 completed
See Reggie extension page for more information.
10:43 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.17 (diff)
10:43 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.17 (diff)
10:41 AM reggie-4.17.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.17
10:40 AM Ticket #1046 (Flagged alignments wizard) closed by Nicklas Nordborg
fixed: Closing this ticket now since we believe the wizard to be usable for …
10:37 AM Changeset [4801] by Nicklas Nordborg
Tagging Reggie 4.17
10:36 AM Changeset [4800] by Nicklas Nordborg
Preparing to release Reggie 4.17.
10:33 AM Changeset [4799] by Nicklas Nordborg
References #1046: Flagged alignments wizard More minor changes: * …

May 8, 2018:

3:32 PM Ticket #1045 (Display FrozenTissueDate annotation in case summary) closed by Nicklas Nordborg
fixed: (In [4798]) Fixes #1045: Display FrozenTissueDate? annotation in case …
3:32 PM Changeset [4798] by Nicklas Nordborg
Fixes #1045: Display FrozenTissueDate? annotation in case summary …
3:22 PM Changeset [4797] by Nicklas Nordborg
References #1046: Flagged alignments wizard Several updates to the …
9:28 AM Changeset [4796] by olle
Refs #1029. Case summary for active project SCAN-B-rec updated by …
7:54 AM Changeset [4795] by olle
Refs #1029. Support for blood items added, based on that used in …

May 7, 2018:

2:25 PM Changeset [4794] by Nicklas Nordborg
References #1046: Flagged alignments wizard The first prototype of …

May 4, 2018:

3:52 PM Changeset [4793] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
3:47 PM Changeset [4792] by olle
Refs #1029. Updates due to version number change to "1.6.0a2". 1. …
3:35 PM Changeset [4791] by olle
Refs #1029. MeLuDI updated in sample registration JSP files by adding …
3:29 PM Changeset [4790] by olle
Refs #1029. Consent registration for active project SCAN-B-rec updated …
8:13 AM Changeset [4789] by olle
Refs #1029. Consent registration for active project SCAN-B-rec updated …

May 2, 2018:

9:40 AM Changeset [4788] by olle
Refs #1029. Case summary for active project SCAN-B-rec updated to use …
9:16 AM Changeset [4787] by olle
Refs #1029. Support for a pre-entry of a PAD number coupled to case …

Apr 27, 2018:

12:09 PM Changeset [4786] by olle
Refs #1029. Consent registration for active project SCAN-B-rec updated …
11:43 AM Changeset [4785] by olle
Refs #1029. Import of code for consent support, taken from Reggie …

Apr 26, 2018:

9:52 AM Changeset [4784] by olle
Refs #1029. Referral form generator updated for non-sticker forms to …

Apr 25, 2018:

4:29 PM Changeset [4783] by olle
Refs #1029. Referral form generator updated for new form versions. …
9:44 AM Changeset [4782] by Nicklas Nordborg
References #1048: Release importer fails if the export contain integer …

Apr 24, 2018:

2:56 PM Ticket #1049 (Improvments to the FrozenTissueDate wizards) created by Nicklas Nordborg
See #969 for current implementation. * Duplicates should no longer …
2:42 PM Ticket #1048 (Release importer fails if the export contain integer enumerated ...) created by Nicklas Nordborg
For example: […] Stack trace: […]
9:10 AM Ticket #1047 (HaplotypeCaller should be wrapped with stdwrap.sh) created by Nicklas Nordborg
Most of the log information that is produced by HaplotypeCaller is …

Apr 23, 2018:

8:32 AM Changeset [4781] by Nicklas Nordborg
References #1046: Flagged alignments wizard Added link on the start …
8:15 AM Ticket #1046 (Flagged alignments wizard) created by Nicklas Nordborg
This is the second step in the genotype QC. Alignments that were …

Apr 20, 2018:

1:11 PM Changeset [4780] by olle
Refs #1029. Case summary updated to show consent info after hospital …
1:08 PM Ticket #1045 (Display FrozenTissueDate annotation in case summary) created by Nicklas Nordborg
11:41 AM net.sf.basedb.relax/install created by Nicklas Nordborg
Create installation instructions
11:36 AM Changeset [4779] by olle
Refs #1029. Bugs fixed in Javascript for sample registration for …
11:19 AM Changeset [4778] by Nicklas Nordborg
Changes for future Relax 1.3
11:17 AM Milestone Relax v1.2 completed
See Relax extension page for more information.
11:17 AM PluginDownload edited by Nicklas Nordborg
Released Relax 1.2 (diff)
11:16 AM net.sf.basedb.relax edited by Nicklas Nordborg
Released Relax 1.2 (diff)
11:14 AM relax-1.2.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.2
11:10 AM Changeset [4777] by Nicklas Nordborg
Tagging Relax 1.2
11:09 AM Changeset [4776] by Nicklas Nordborg
Preparing to release Relax 1.2
11:09 AM Ticket #1028 (Add support for StringTie data) closed by Nicklas Nordborg
fixed: Seems to work after full test of releasing data from reggie via relax …
10:29 AM Changeset [4775] by olle
Refs #1029. Referral form generator updated for forms with sticker …
9:20 AM Changeset [4774] by olle
Refs #1029. Referral form generator updated to create a fixed number …
9:00 AM Changeset [4773] by olle
Refs #1029. Support for consent coupled to case item added, based on …

Apr 19, 2018:

1:26 PM Ticket #1044 (Selecting INCA annotations for the Level 3 exporter) closed by Nicklas Nordborg
fixed: (In [4772]) Fixes #1044: Selecting INCA annotations for the Level 3 …
1:26 PM Changeset [4772] by Nicklas Nordborg
Fixes #1044: Selecting INCA annotations for the Level 3 exporter
11:34 AM Changeset [4771] by Nicklas Nordborg
References #1028: Add support for StringTie? data The Level 3 export …
9:47 AM Ticket #1044 (Selecting INCA annotations for the Level 3 exporter) created by Nicklas Nordborg
The Level 3 export currently exports ALL INCA annotations if not a …
Note: See TracTimeline for information about the timeline view.