Timeline
Apr 25, 2018:
- 4:29 PM Changeset [4783] by
- Refs #1029. Referral form generator updated for new form versions. …
- 9:44 AM Changeset [4782] by
- References #1048: Release importer fails if the export contain integer …
Apr 24, 2018:
- 2:56 PM Ticket #1049 (Improvments to the FrozenTissueDate wizards) created by
- See #969 for current implementation. * Duplicates should no longer …
- 2:42 PM Ticket #1048 (Release importer fails if the export contain integer enumerated ...) created by
- For example: […] Stack trace: […]
- 9:10 AM Ticket #1047 (HaplotypeCaller should be wrapped with stdwrap.sh) created by
- Most of the log information that is produced by HaplotypeCaller is …
Apr 23, 2018:
- 8:32 AM Changeset [4781] by
- References #1046: Flagged alignments wizard Added link on the start …
- 8:15 AM Ticket #1046 (Flagged alignments wizard) created by
- This is the second step in the genotype QC. Alignments that were …
Apr 20, 2018:
- 1:11 PM Changeset [4780] by
- Refs #1029. Case summary updated to show consent info after hospital …
- 1:08 PM Ticket #1045 (Display FrozenTissueDate annotation in case summary) created by
- 11:41 AM net.sf.basedb.relax/install created by
- Create installation instructions
- 11:36 AM Changeset [4779] by
- Refs #1029. Bugs fixed in Javascript for sample registration for …
- 11:19 AM Changeset [4778] by
- Changes for future Relax 1.3
- 11:17 AM Milestone Relax v1.2 completed
- See Relax extension page for more information.
- 11:17 AM PluginDownload edited by
- Released Relax 1.2 (diff)
- 11:16 AM net.sf.basedb.relax edited by
- Released Relax 1.2 (diff)
- 11:10 AM Changeset [4777] by
- Tagging Relax 1.2
- 11:09 AM Changeset [4776] by
- Preparing to release Relax 1.2
- 11:09 AM Ticket #1028 (Add support for StringTie data) closed by
- fixed: Seems to work after full test of releasing data from reggie via relax …
- 10:29 AM Changeset [4775] by
- Refs #1029. Referral form generator updated for forms with sticker …
- 9:20 AM Changeset [4774] by
- Refs #1029. Referral form generator updated to create a fixed number …
- 9:00 AM Changeset [4773] by
- Refs #1029. Support for consent coupled to case item added, based on …
Apr 19, 2018:
- 1:26 PM Ticket #1044 (Selecting INCA annotations for the Level 3 exporter) closed by
- fixed: (In [4772]) Fixes #1044: Selecting INCA annotations for the Level 3 …
- 1:26 PM Changeset [4772] by
- Fixes #1044: Selecting INCA annotations for the Level 3 exporter
- 11:34 AM Changeset [4771] by
- References #1028: Add support for StringTie? data The Level 3 export …
- 9:47 AM Ticket #1044 (Selecting INCA annotations for the Level 3 exporter) created by
- The Level 3 export currently exports ALL INCA annotations if not a …
Apr 18, 2018:
- 3:11 PM Ticket #1043 (The Level 3 exporter fails if the release server has a specified port) closed by
- fixed: (In [4770]) Fixes #1043: The Level 3 exporter fails if the release …
- 3:11 PM Changeset [4770] by
- Fixes #1043: The Level 3 exporter fails if the release server has a …
- 2:35 PM Ticket #1043 (The Level 3 exporter fails if the release server has a specified port) created by
- Same problem as #1042 in Reggie.
- 2:20 PM Changeset [4769] by
- References #1028: Add support for StringTie? data The Cohort exporter …
- 8:35 AM Changeset [4768] by
- Refs #1029. Referral form generation updated by removing menu for …
Apr 17, 2018:
- 4:48 PM Changeset [4767] by
- Refs #1029. Referral form generator update: Design update of referral …
- 2:15 PM Milestone INCA XML to CSV converter 1.2 completed
- See INCA XML to CSV converter page for more …
- 2:15 PM Ticket #1021 (Add INCA 2.0 columns to the blacklist) closed by
- fixed
- 2:13 PM Changeset [4766] by
- Changes for future release IncaXML2CSV 1.3
- 2:12 PM net.sf.basedb.inca edited by
- Released IncaXML2CSV 1.2 (diff)
- 2:10 PM Changeset [4765] by
- Tagging IncaXML2CSV 1.2
- 2:10 PM Changeset [4764] by
- Preparing to release IncaXML2CSV 1.2
- 2:08 PM Changeset [4763] by
- Preparing for future release Reggie 4.17.
- 2:07 PM Milestone Reggie v4.16 completed
- See Reggie extension page for more information.
- 2:06 PM PluginDownload edited by
- Released Reggie 4.16 (diff)
- 2:05 PM net.sf.basedb.reggie edited by
- Released Reggie 4.16 (diff)
- 2:02 PM Changeset [4762] by
- Tagging Reggie 4.16
- 2:01 PM Changeset [4761] by
- Preparing to release Reggie 4.16
- 1:57 PM Tickets #1022,1025,1026,1031 batch updated by
- fixed
- 1:57 PM Ticket #1042 (The release exporter fails if the release server has a specified port) closed by
- fixed: (In [4760]) Fixes #1042: The release exporter fails if the release …
- 1:57 PM Changeset [4760] by
- Fixes #1042: The release exporter fails if the release server has a …
- 1:48 PM Changeset [4759] by
- References #1025: Release exporter should support StringTie? data …
- 1:08 PM Ticket #1042 (The release exporter fails if the release server has a specified port) created by
- The File server item in BASE that is used by the release exporter may …
- 12:48 PM Ticket #1041 (The release exporter should export the QC_GenoTypeHET_PCT annotation) closed by
- fixed: (In [4758]) Fixes #1041: The release exporter should export the …
- 12:48 PM Changeset [4758] by
- Fixes #1041: The release exporter should export the QC_GenoTypeHET_PCT …
- 11:34 AM Ticket #1041 (The release exporter should export the QC_GenoTypeHET_PCT annotation) created by
- As for other annotations from the AlignedSequences item the …
- 9:54 AM Ticket #1036 (Add support for public/private key authentication) closed by
- fixed
- 9:53 AM Ticket #1038 (Add support for SSH connections with private key authentication) closed by
- fixed
Apr 16, 2018:
- 3:37 PM Changeset [4757] by
- Refs #1029. MeLuDI updated in error message to refer to the correct …
- 3:32 PM Changeset [4756] by
-
Refs #1029. Updates due to version number change to "
1.6.0-dev". … - 2:32 PM Ticket #1035 (Upgrade SSHj library) closed by
- fixed
- 2:31 PM Ticket #1037 (Depend on BASE 3.13) closed by
- fixed
- 1:44 PM Changeset [4755] by
- References #1038: Add support for SSH connections with private key …
- 12:51 PM Changeset [4754] by
- References #1038: Add support for SSH connections with private key …
- 12:51 PM Changeset [4753] by
- References #1038: Add support for SSH connections with private key …
- 11:47 AM Changeset [4752] by
- References #1038: Add support for SSH connections with private key …
- 11:44 AM Changeset [4751] by
- References #1038: Add support for SSH connections with private key …
- 11:02 AM Changeset [4750] by
- References #1036: Add support for public/private key authentication …
- 9:17 AM Ticket #1040 (Set max BASE version to 3.13) closed by
- fixed: (In [4749]) Fixes #1040: Set max BASE version to 3.13
- 9:17 AM Changeset [4749] by
- Fixes #1040: Set max BASE version to 3.13
- 9:13 AM Ticket #1040 (Set max BASE version to 3.13) created by
- BASE 3.13 is going to include BouncyCastle? in the core distribution …
- 9:10 AM Ticket #1039 (Remove BouncyCastle jar files) created by
- BASE 3.13 is going to include BouncyCastle in the core distribution …
Apr 13, 2018:
- 2:03 PM Changeset [4748] by
- References #1036: Add support for public/private key authentication …
- 1:46 PM net.sf.basedb.opengrid/install edited by
- References #1036. Documented the new configuration options for using … (diff)
- 11:26 AM Changeset [4747] by
- References #1022: INCA import/statistics wizards changes due to INCA …
- 9:18 AM Changeset [4746] by
- References #1022: INCA import/statistics wizards changes due to INCA …
Apr 10, 2018:
- 3:29 PM Changeset [4745] by
- References #1025: Release exporter should support StringTie? data …
- 1:08 PM Changeset [4744] by
- References #1034: Remove expression matrix from release exporter …
- 1:06 PM Changeset [4743] by
- References #1025 and #1034. Removed check that all raw bioassays must …
- 8:57 AM Ticket #1038 (Add support for SSH connections with private key authentication) created by
- Implemented in BASE: http://base.thep.lu.se/ticket/2112 We need to …
Apr 9, 2018:
- 11:35 AM Changeset [4742] by
- References #1036: Add support for public/private key authentication …
- 9:25 AM Changeset [4741] by
- References #1036: Add support for public/private key authentication …
- 8:25 AM Changeset [4740] by
- References #1037: Depend on BASE 3.13 Updated to BASE 3.13 and …
Apr 6, 2018:
Apr 5, 2018:
- 12:44 PM Ticket #1037 (Depend on BASE 3.13) closed by
- fixed: (In [4739]) Fixes #1037: Depend on BASE 3.12
- 12:44 PM Changeset [4739] by
- Fixes #1037: Depend on BASE 3.12
- 12:41 PM Ticket #1037 (Depend on BASE 3.13) created by
- Since we are making big changes, it is better to use the latest BASE …
- 12:38 PM Changeset [4738] by
- References #1035: Upgrade SSHj library
- 11:37 AM Changeset [4737] by
- References #1028: Add support for StringTie? data The Level 3 exporter …
- 11:33 AM Ticket #1036 (Add support for public/private key authentication) created by
- Instead of a username/password, it would be nice to be able to use …
- 11:32 AM Ticket #1035 (Upgrade SSHj library) created by
- Latest version is 0.23.0. https://github.com/hierynomus/sshj
- 11:20 AM Changeset [4736] by
-
Refs #1029. Updates due to version number change to "
1.6.0a1". 1. … - 9:32 AM Changeset [4735] by
- References #1028: Add support for StringTie? data The Relax …
- 8:55 AM Changeset [4734] by
- Refs #1029. Case/sample registration in SCAN-B-rec project updated for …
- 8:24 AM Changeset [4733] by
- Refs #1029. Code fork introduced for case/sample registration in …
Apr 4, 2018:
- 3:56 PM Changeset [4732] by
- Refs #1029. Specimen tube registration updated in the case section …
- 1:47 PM Changeset [4731] by
- Refs #1029. MeLuDI updated in sample report servlet code with debug …
- 12:30 PM Changeset [4730] by
- Refs #1029. Specimen tube registration updated in the set of mutation …
- 11:23 AM Changeset [4729] by
- Refs #1029. MeLuDI updated by extending list of menu options for …
- 10:41 AM Changeset [4728] by
- References #1031: Define a genotype QC flag that can be set on …
- 9:18 AM Changeset [4727] by
- Refs #1029. MeLuDI updated in most wizards by specifying that a …
Apr 3, 2018:
- 8:45 AM Changeset [4726] by
- Refs #1029. Referral generation updated in servlet by exchanging …
Mar 29, 2018:
- 1:39 PM Changeset [4725] by
-
Refs #1029. MeLuDI updated by adding sites "
Halmstad" and … - 1:13 PM Changeset [4724] by
- Refs #1029. Referral generation updated: i. The MeLuDI main page …
- 11:29 AM Changeset [4723] by
- Refs #1029. MeLuDI updated in case/sample registration wizards for …
- 10:38 AM Changeset [4722] by
- Refs #1029. MeLuDI updated with new configuration flag …
- 8:16 AM Ticket #1034 (Remove expression matrix from release exporter) closed by
- fixed: (In [4721]) Fixes #1034: Remove expression matrix from release exporter
- 8:16 AM Changeset [4721] by
- Fixes #1034: Remove expression matrix from release exporter
Mar 28, 2018:
- 3:48 PM Ticket #1034 (Remove expression matrix from release exporter) created by
- The files are getting rather big and difficult to work with.
- 3:23 PM Changeset [4720] by
- References #1022: INCA import/statistics wizards changes due to INCA …
- 2:14 PM Changeset [4719] by
- References #1022: INCA import/statistics wizards changes due to INCA …
- 1:13 PM Changeset [4718] by
- References #1022: INCA import/statistics wizards changes due to INCA …
- 12:33 PM Ticket #1033 (The INCA export wizard should only export personal numbers) closed by
- fixed: (In [4717]) Fixes #1033: The INCA export wizard should only export …
- 12:33 PM Changeset [4717] by
- Fixes #1033: The INCA export wizard should only export personal …
Mar 27, 2018:
- 2:11 PM Ticket #1033 (The INCA export wizard should only export personal numbers) created by
- All other information in the file should be removed.
Mar 26, 2018:
- 9:14 AM Changeset [4716] by
- Refs #1029. MeLuDI updated with new configuration flag …
- 8:48 AM Changeset [4715] by
-
Refs #1029. New directory
fonts/added toMETA-INF/with OpenSans … - 8:44 AM Changeset [4714] by
-
Refs #1029.
MANIFEST.MFfile inMETA-INF/updated with new line …
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