Timeline



Apr 6, 2018:

1:20 PM Ticket #1037 (Depend on BASE 3.13) reopened by Nicklas Nordborg
10:38 AM Ticket #1036 (Add support for public/private key authentication) updated by Nicklas Nordborg
I got this to work when using PuTTY key files, but there is a problem …

Apr 5, 2018:

12:44 PM Ticket #1037 (Depend on BASE 3.13) closed by Nicklas Nordborg
fixed: (In [4739]) Fixes #1037: Depend on BASE 3.12
12:44 PM Changeset [4739] by Nicklas Nordborg
Fixes #1037: Depend on BASE 3.12
12:41 PM Ticket #1037 (Depend on BASE 3.13) created by Nicklas Nordborg
Since we are making big changes, it is better to use the latest BASE …
12:38 PM Ticket #1035 (Upgrade SSHj library) updated by Nicklas Nordborg
(In [4738]) References #1035: Upgrade SSHj library
12:38 PM Changeset [4738] by Nicklas Nordborg
References #1035: Upgrade SSHj library
11:37 AM Ticket #1028 (Add support for StringTie data) updated by Nicklas Nordborg
(In [4737]) References #1028: Add support for StringTie data The …
11:37 AM Changeset [4737] by Nicklas Nordborg
References #1028: Add support for StringTie data The Level 3 exporter …
11:33 AM Ticket #1036 (Add support for public/private key authentication) created by Nicklas Nordborg
Instead of a username/password, it would be nice to be able to use …
11:32 AM Ticket #1035 (Upgrade SSHj library) created by Nicklas Nordborg
Latest version is 0.23.0. https://github.com/hierynomus/sshj
11:20 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4736]) Refs #1029. Updates due to version number change to …
11:20 AM Changeset [4736] by olle
Refs #1029. Updates due to version number change to "1.6.0a1". 1. …
9:32 AM Ticket #1028 (Add support for StringTie data) updated by Nicklas Nordborg
(In [4735]) References #1028: Add support for StringTie data The …
9:32 AM Changeset [4735] by Nicklas Nordborg
References #1028: Add support for StringTie data The Relax …
8:55 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4734]) Refs #1029. Case/sample registration in SCAN-B-rec project …
8:55 AM Changeset [4734] by olle
Refs #1029. Case/sample registration in SCAN-B-rec project updated for …
8:24 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4733]) Refs #1029. Code fork introduced for case/sample …
8:24 AM Changeset [4733] by olle
Refs #1029. Code fork introduced for case/sample registration in …
7:30 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Summary of changes to MeLuDI so far: (To be added later)

Apr 4, 2018:

3:56 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4732]) Refs #1029. Specimen tube registration updated in the case …
3:56 PM Changeset [4732] by olle
Refs #1029. Specimen tube registration updated in the case section …
1:54 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4731]) Refs #1029. …
1:47 PM Changeset [4731] by olle
Refs #1029. MeLuDI updated in sample report servlet code with debug …
12:30 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4730]) Refs #1029. Specimen tube registration updated in the set …
12:30 PM Changeset [4730] by olle
Refs #1029. Specimen tube registration updated in the set of mutation …
11:23 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4729]) Refs #1029. MeLuDI updated by extending list of menu …
11:23 AM Changeset [4729] by olle
Refs #1029. MeLuDI updated by extending list of menu options for …
10:41 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4728]) References #1031: Define a genotype QC flag that can be …
10:41 AM Changeset [4728] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
9:18 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4727]) Refs #1029. MeLuDI updated in most wizards by specifying …
9:18 AM Changeset [4727] by olle
Refs #1029. MeLuDI updated in most wizards by specifying that a …

Apr 3, 2018:

8:45 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4726]) Refs #1029. Referral generation updated in servlet by …
8:45 AM Changeset [4726] by olle
Refs #1029. Referral generation updated in servlet by exchanging …

Mar 29, 2018:

1:39 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4725]) Refs #1029. MeLuDI updated by adding sites "Halmstad" …
1:39 PM Changeset [4725] by olle
Refs #1029. MeLuDI updated by adding sites "Halmstad" and …
1:13 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4724]) Refs #1029. Referral generation updated: i. The …
1:13 PM Changeset [4724] by olle
Refs #1029. Referral generation updated: i. The MeLuDI main page …
1:09 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * Referral generation should be updated: i. The …
11:29 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4723]) Refs #1029. MeLuDI updated in case/sample registration …
11:29 AM Changeset [4723] by olle
Refs #1029. MeLuDI updated in case/sample registration wizards for …
11:27 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * MeLuDI should be updated in case/sample …
10:38 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4722]) Refs #1029. MeLuDI updated with new configuration flag …
10:38 AM Changeset [4722] by olle
Refs #1029. MeLuDI updated with new configuration flag …
10:04 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: * MeLuDI should be updated with new configuration flag …
8:16 AM Ticket #1034 (Remove expression matrix from release exporter) closed by Nicklas Nordborg
fixed: (In [4721]) Fixes #1034: Remove expression matrix from release exporter
8:16 AM Changeset [4721] by Nicklas Nordborg
Fixes #1034: Remove expression matrix from release exporter

Mar 28, 2018:

3:48 PM Ticket #1034 (Remove expression matrix from release exporter) created by Nicklas Nordborg
The files are getting rather big and difficult to work with.
3:23 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4720]) References #1022: INCA import/statistics wizards changes …
3:23 PM Changeset [4720] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
2:14 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4719]) References #1022: INCA import/statistics wizards changes …
2:14 PM Changeset [4719] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:13 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4718]) References #1022: INCA import/statistics wizards changes …
1:13 PM Changeset [4718] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
12:33 PM Ticket #1033 (The INCA export wizard should only export personal numbers) closed by Nicklas Nordborg
fixed: (In [4717]) Fixes #1033: The INCA export wizard should only export …
12:33 PM Changeset [4717] by Nicklas Nordborg
Fixes #1033: The INCA export wizard should only export personal …

Mar 27, 2018:

2:11 PM Ticket #1033 (The INCA export wizard should only export personal numbers) created by Nicklas Nordborg
All other information in the file should be removed.

Mar 26, 2018:

9:37 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Discussion regarding site prefix: * Currently the only MeLuDI …
9:14 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4716]) Refs #1029. MeLuDI updated with new configuration flag …
9:14 AM Changeset [4716] by olle
Refs #1029. MeLuDI updated with new configuration flag …
9:12 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: MeLuDI should be updated with new configuration flag …
8:48 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4715]) Refs #1029. New directory fonts/ added to META-INF/
8:48 AM Changeset [4715] by olle
Refs #1029. New directory fonts/ added to META-INF/ with OpenSans …
8:44 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4714]) Refs #1029. MANIFEST.MF file in META-INF/ updated with …
8:44 AM Changeset [4714] by olle
Refs #1029. MANIFEST.MF file in META-INF/ updated with new line …

Mar 22, 2018:

9:53 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4713]) References #1031: Define a genotype QC flag that can be …
9:53 AM Changeset [4713] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:27 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4712]) References #1031: Define a genotype QC flag that can be …
8:27 AM Changeset [4712] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …

Mar 20, 2018:

12:46 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4711]) References #1031: Define a genotype QC flag that can be …
12:46 PM Changeset [4711] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
12:39 PM net.sf.basedb.inca edited by Nicklas Nordborg
Added 1.2-dev test release (diff)
8:58 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4710]) References #1031: Define a genotype QC flag that can be …
8:58 AM Changeset [4710] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:45 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
Status changed
8:34 AM Ticket #1021 (Add INCA 2.0 columns to the blacklist) updated by Nicklas Nordborg
(In [4709]) References #1021: Add INCA 2.0 columns to the blacklist …
8:34 AM Changeset [4709] by Nicklas Nordborg
References #1021: Add INCA 2.0 columns to the blacklist Added: * …

Mar 19, 2018:

1:41 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) closed by Nicklas Nordborg
fixed
1:40 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
See Reggie 4.16 update notes for …
1:38 PM net.sf.basedb.reggie/notes416 created by Nicklas Nordborg
Added a note about INCA 2 changes
12:59 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
A file with all INCA 2 annotation type definitions has been uploaded …
12:53 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4708]) References #1022: INCA import/statistics wizards changes …
12:53 PM Changeset [4708] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:25 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4707]) References #1022: INCA import/statistics wizards changes …
11:25 AM Changeset [4707] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
9:49 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4706]) Refs #1029. First import of code for referral generation, …
9:49 AM Changeset [4706] by olle
Refs #1029. First import of code for referral generation, taken from …

Mar 16, 2018:

2:29 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
(In [4705]) References #1024: Create annotation type definitions for …
2:29 PM Changeset [4705] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4704]) References #1022: INCA import/statistics wizards changes …
2:26 PM Changeset [4704] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:28 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4703]) References #1022: INCA import/statistics wizards changes …
1:28 PM Changeset [4703] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:37 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4702]) References #1022: INCA import/statistics wizards changes …
11:37 AM Changeset [4702] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:32 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
Status changed
9:14 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4701]) Fixes #1032: Reference date batch update wizard changes …
9:14 AM Changeset [4701] by Nicklas Nordborg
Fixes #1032: Reference date batch update wizard changes due to INCA …
8:29 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) updated by Nicklas Nordborg
Status, Summary changed
8:28 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) created by Nicklas Nordborg
The reference date batch update wizard need to be updated to use the …
8:20 AM Ticket #1023 (Release exporter changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4700]) Fixes #1023: Release exporter changes due to INCA 2.0 The …
8:20 AM Changeset [4700] by Nicklas Nordborg
Fixes #1023: Release exporter changes due to INCA 2.0 The release …
7:51 AM Ticket #1023 (Release exporter changes due to INCA 2.0) updated by Nicklas Nordborg
Status changed

Mar 15, 2018:

2:28 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
(In [4699]) References #1024: Create annotation type definitions for …
2:28 PM Changeset [4699] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
Status changed
11:41 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4698]) Refs #1029. New directory META-INF/lib added.
11:41 AM Changeset [4698] by olle
Refs #1029. New directory META-INF/lib added.
9:50 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4697]) Refs #1029. New Java package directory "pdf" added.
9:50 AM Changeset [4697] by olle
Refs #1029. New Java package directory "pdf" added.
9:41 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design discussion: * First version of SCAN-B-rec referral form …
9:09 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Traceability note: The support for referral form generation in MeLuDI …
9:02 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4696]) Refs #1029. Updates due to version number change to …
9:02 AM Changeset [4696] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:46 AM net.sf.basedb.meludi edited by olle
(diff)
8:39 AM meludi-1.5.0.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.5.0
8:25 AM Changeset [4695] by olle
Creating tagged release MeLuDI v1.5.0

Mar 14, 2018:

2:52 PM Changeset [4694] by Nicklas Nordborg
Changes for future release Labenv 1.7
2:50 PM Milestone LabEnv v1.6 completed
See LabEnv extension page for more information.
2:50 PM PluginDownload edited by Nicklas Nordborg
Released Labenv 1.6 (diff)
2:49 PM net.sf.basedb.labenv edited by Nicklas Nordborg
Released Labenv 1.6 (diff)
2:48 PM labenv-1.6.tar.gz attached to net.sf.basedb.labenv by Nicklas Nordborg
Labenv 1.6
2:46 PM Changeset [4693] by Nicklas Nordborg
Tagging Labenv 1.6
2:45 PM Changeset [4692] by Nicklas Nordborg
Prepering to release Labenv 1.6

Mar 13, 2018:

3:26 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) closed by Nicklas Nordborg
fixed: (In [4691]) Fixes #1030: The "Force update counters" icon on the …
3:26 PM Changeset [4691] by Nicklas Nordborg
Fixes #1030: The "Force update counters" icon on the Reggie start page …
1:28 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) created by Nicklas Nordborg
For example, we have matched the genotype of several alignments to …

Mar 12, 2018:

2:49 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) created by Nicklas Nordborg
The time it takes for Reggie to update the counters on the start page …

Mar 9, 2018:

10:31 AM Ticket #911 (MeLuDI should support multiple projects) updated by olle
(In [4690]) Refs #911. Updates due to version number change to …
10:31 AM Changeset [4690] by olle
Refs #911. Updates due to version number change to "1.5.0". 1. …
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