Timeline



Apr 5, 2018:

12:44 PM Ticket #1037 (Depend on BASE 3.13) closed by Nicklas Nordborg
fixed: (In [4739]) Fixes #1037: Depend on BASE 3.12
12:44 PM Changeset [4739] by Nicklas Nordborg
Fixes #1037: Depend on BASE 3.12
12:41 PM Ticket #1037 (Depend on BASE 3.13) created by Nicklas Nordborg
Since we are making big changes, it is better to use the latest BASE …
12:38 PM Changeset [4738] by Nicklas Nordborg
References #1035: Upgrade SSHj library
11:37 AM Changeset [4737] by Nicklas Nordborg
References #1028: Add support for StringTie? data The Level 3 exporter …
11:33 AM Ticket #1036 (Add support for public/private key authentication) created by Nicklas Nordborg
Instead of a username/password, it would be nice to be able to use …
11:32 AM Ticket #1035 (Upgrade SSHj library) created by Nicklas Nordborg
Latest version is 0.23.0. https://github.com/hierynomus/sshj
11:20 AM Changeset [4736] by olle
Refs #1029. Updates due to version number change to "1.6.0a1". 1. …
9:32 AM Changeset [4735] by Nicklas Nordborg
References #1028: Add support for StringTie? data The Relax …
8:55 AM Changeset [4734] by olle
Refs #1029. Case/sample registration in SCAN-B-rec project updated for …
8:24 AM Changeset [4733] by olle
Refs #1029. Code fork introduced for case/sample registration in …

Apr 4, 2018:

3:56 PM Changeset [4732] by olle
Refs #1029. Specimen tube registration updated in the case section …
1:47 PM Changeset [4731] by olle
Refs #1029. MeLuDI updated in sample report servlet code with debug …
12:30 PM Changeset [4730] by olle
Refs #1029. Specimen tube registration updated in the set of mutation …
11:23 AM Changeset [4729] by olle
Refs #1029. MeLuDI updated by extending list of menu options for …
10:41 AM Changeset [4728] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
9:18 AM Changeset [4727] by olle
Refs #1029. MeLuDI updated in most wizards by specifying that a …

Apr 3, 2018:

8:45 AM Changeset [4726] by olle
Refs #1029. Referral generation updated in servlet by exchanging …

Mar 29, 2018:

1:39 PM Changeset [4725] by olle
Refs #1029. MeLuDI updated by adding sites "Halmstad" and …
1:13 PM Changeset [4724] by olle
Refs #1029. Referral generation updated: i. The MeLuDI main page …
11:29 AM Changeset [4723] by olle
Refs #1029. MeLuDI updated in case/sample registration wizards for …
10:38 AM Changeset [4722] by olle
Refs #1029. MeLuDI updated with new configuration flag …
8:16 AM Ticket #1034 (Remove expression matrix from release exporter) closed by Nicklas Nordborg
fixed: (In [4721]) Fixes #1034: Remove expression matrix from release exporter
8:16 AM Changeset [4721] by Nicklas Nordborg
Fixes #1034: Remove expression matrix from release exporter

Mar 28, 2018:

3:48 PM Ticket #1034 (Remove expression matrix from release exporter) created by Nicklas Nordborg
The files are getting rather big and difficult to work with.
3:23 PM Changeset [4720] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
2:14 PM Changeset [4719] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:13 PM Changeset [4718] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
12:33 PM Ticket #1033 (The INCA export wizard should only export personal numbers) closed by Nicklas Nordborg
fixed: (In [4717]) Fixes #1033: The INCA export wizard should only export …
12:33 PM Changeset [4717] by Nicklas Nordborg
Fixes #1033: The INCA export wizard should only export personal …

Mar 27, 2018:

2:11 PM Ticket #1033 (The INCA export wizard should only export personal numbers) created by Nicklas Nordborg
All other information in the file should be removed.

Mar 26, 2018:

9:14 AM Changeset [4716] by olle
Refs #1029. MeLuDI updated with new configuration flag …
8:48 AM Changeset [4715] by olle
Refs #1029. New directory fonts/ added to META-INF/ with OpenSans …
8:44 AM Changeset [4714] by olle
Refs #1029. MANIFEST.MF file in META-INF/ updated with new line …

Mar 22, 2018:

9:53 AM Changeset [4713] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:27 AM Changeset [4712] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …

Mar 20, 2018:

12:46 PM Changeset [4711] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
12:39 PM net.sf.basedb.inca edited by Nicklas Nordborg
Added 1.2-dev test release (diff)
8:58 AM Changeset [4710] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:34 AM Changeset [4709] by Nicklas Nordborg
References #1021: Add INCA 2.0 columns to the blacklist Added: * …

Mar 19, 2018:

1:41 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) closed by Nicklas Nordborg
fixed
1:38 PM net.sf.basedb.reggie/notes416 created by Nicklas Nordborg
Added a note about INCA 2 changes
12:53 PM Changeset [4708] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:25 AM Changeset [4707] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
9:49 AM Changeset [4706] by olle
Refs #1029. First import of code for referral generation, taken from …

Mar 16, 2018:

2:29 PM Changeset [4705] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Changeset [4704] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:28 PM Changeset [4703] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:37 AM Changeset [4702] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
9:14 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4701]) Fixes #1032: Reference date batch update wizard changes …
9:14 AM Changeset [4701] by Nicklas Nordborg
Fixes #1032: Reference date batch update wizard changes due to INCA …
8:28 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) created by Nicklas Nordborg
The reference date batch update wizard need to be updated to use the …
8:20 AM Ticket #1023 (Release exporter changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4700]) Fixes #1023: Release exporter changes due to INCA 2.0 The …
8:20 AM Changeset [4700] by Nicklas Nordborg
Fixes #1023: Release exporter changes due to INCA 2.0 The release …

Mar 15, 2018:

2:28 PM Changeset [4699] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
11:41 AM Changeset [4698] by olle
Refs #1029. New directory META-INF/lib added.
9:50 AM Changeset [4697] by olle
Refs #1029. New Java package directory "pdf" added.
9:02 AM Changeset [4696] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:46 AM net.sf.basedb.meludi edited by olle
(diff)
8:39 AM meludi-1.5.0.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.5.0
8:25 AM Changeset [4695] by olle
Creating tagged release MeLuDI v1.5.0

Mar 14, 2018:

2:52 PM Changeset [4694] by Nicklas Nordborg
Changes for future release Labenv 1.7
2:50 PM Milestone LabEnv v1.6 completed
See LabEnv extension page for more information.
2:50 PM PluginDownload edited by Nicklas Nordborg
Released Labenv 1.6 (diff)
2:49 PM net.sf.basedb.labenv edited by Nicklas Nordborg
Released Labenv 1.6 (diff)
2:48 PM labenv-1.6.tar.gz attached to net.sf.basedb.labenv by Nicklas Nordborg
Labenv 1.6
2:46 PM Changeset [4693] by Nicklas Nordborg
Tagging Labenv 1.6
2:45 PM Changeset [4692] by Nicklas Nordborg
Prepering to release Labenv 1.6

Mar 13, 2018:

3:26 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) closed by Nicklas Nordborg
fixed: (In [4691]) Fixes #1030: The "Force update counters" icon on the …
3:26 PM Changeset [4691] by Nicklas Nordborg
Fixes #1030: The "Force update counters" icon on the Reggie start page …
1:28 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) created by Nicklas Nordborg
For example, we have matched the genotype of several alignments to …

Mar 12, 2018:

2:49 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) created by Nicklas Nordborg
The time it takes for Reggie to update the counters on the start page …

Mar 9, 2018:

10:31 AM Changeset [4690] by olle
Refs #911. Updates due to version number change to "1.5.0". 1. …

Mar 8, 2018:

1:35 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) created by olle
MeLuDI should be adapted to support the SCAN-B-rec project. Initially …
1:14 PM Ticket #911 (MeLuDI should support multiple projects) closed by olle
fixed: Ticket closed as multiple project support to MeLuDI has been added, …
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