Timeline



Mar 26, 2018:

9:37 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Discussion regarding site prefix: * Currently the only MeLuDI …
9:14 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4716]) Refs #1029. MeLuDI updated with new configuration flag …
9:14 AM Changeset [4716] by olle
Refs #1029. MeLuDI updated with new configuration flag …
9:12 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design update: MeLuDI should be updated with new configuration flag …
8:48 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4715]) Refs #1029. New directory fonts/ added to META-INF/
8:48 AM Changeset [4715] by olle
Refs #1029. New directory fonts/ added to META-INF/ with OpenSans …
8:44 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4714]) Refs #1029. MANIFEST.MF file in META-INF/ updated with …
8:44 AM Changeset [4714] by olle
Refs #1029. MANIFEST.MF file in META-INF/ updated with new line …

Mar 22, 2018:

9:53 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4713]) References #1031: Define a genotype QC flag that can be …
9:53 AM Changeset [4713] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:27 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4712]) References #1031: Define a genotype QC flag that can be …
8:27 AM Changeset [4712] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …

Mar 20, 2018:

12:46 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4711]) References #1031: Define a genotype QC flag that can be …
12:46 PM Changeset [4711] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
12:39 PM net.sf.basedb.inca edited by Nicklas Nordborg
Added 1.2-dev test release (diff)
8:58 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
(In [4710]) References #1031: Define a genotype QC flag that can be …
8:58 AM Changeset [4710] by Nicklas Nordborg
References #1031: Define a genotype QC flag that can be set on …
8:45 AM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) updated by Nicklas Nordborg
Status changed
8:34 AM Ticket #1021 (Add INCA 2.0 columns to the blacklist) updated by Nicklas Nordborg
(In [4709]) References #1021: Add INCA 2.0 columns to the blacklist …
8:34 AM Changeset [4709] by Nicklas Nordborg
References #1021: Add INCA 2.0 columns to the blacklist Added: * …

Mar 19, 2018:

1:41 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) closed by Nicklas Nordborg
fixed
1:40 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
See Reggie 4.16 update notes for …
1:38 PM net.sf.basedb.reggie/notes416 created by Nicklas Nordborg
Added a note about INCA 2 changes
12:59 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
A file with all INCA 2 annotation type definitions has been uploaded …
12:53 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4708]) References #1022: INCA import/statistics wizards changes …
12:53 PM Changeset [4708] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:25 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4707]) References #1022: INCA import/statistics wizards changes …
11:25 AM Changeset [4707] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
9:49 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4706]) Refs #1029. First import of code for referral generation, …
9:49 AM Changeset [4706] by olle
Refs #1029. First import of code for referral generation, taken from …

Mar 16, 2018:

2:29 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
(In [4705]) References #1024: Create annotation type definitions for …
2:29 PM Changeset [4705] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4704]) References #1022: INCA import/statistics wizards changes …
2:26 PM Changeset [4704] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
1:28 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4703]) References #1022: INCA import/statistics wizards changes …
1:28 PM Changeset [4703] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:37 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
(In [4702]) References #1022: INCA import/statistics wizards changes …
11:37 AM Changeset [4702] by Nicklas Nordborg
References #1022: INCA import/statistics wizards changes due to INCA …
11:32 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
Status changed
9:14 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4701]) Fixes #1032: Reference date batch update wizard changes …
9:14 AM Changeset [4701] by Nicklas Nordborg
Fixes #1032: Reference date batch update wizard changes due to INCA …
8:29 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) updated by Nicklas Nordborg
Status, Summary changed
8:28 AM Ticket #1032 (Reference date batch update wizard changes due to INCA 2.0) created by Nicklas Nordborg
The reference date batch update wizard need to be updated to use the …
8:20 AM Ticket #1023 (Release exporter changes due to INCA 2.0) closed by Nicklas Nordborg
fixed: (In [4700]) Fixes #1023: Release exporter changes due to INCA 2.0 The …
8:20 AM Changeset [4700] by Nicklas Nordborg
Fixes #1023: Release exporter changes due to INCA 2.0 The release …
7:51 AM Ticket #1023 (Release exporter changes due to INCA 2.0) updated by Nicklas Nordborg
Status changed

Mar 15, 2018:

2:28 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
(In [4699]) References #1024: Create annotation type definitions for …
2:28 PM Changeset [4699] by Nicklas Nordborg
References #1024: Create annotation type definitions for INCA 2.0 …
2:26 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) updated by Nicklas Nordborg
Status changed
11:41 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4698]) Refs #1029. New directory META-INF/lib added.
11:41 AM Changeset [4698] by olle
Refs #1029. New directory META-INF/lib added.
9:50 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4697]) Refs #1029. New Java package directory "pdf" added.
9:50 AM Changeset [4697] by olle
Refs #1029. New Java package directory "pdf" added.
9:41 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Design discussion: * First version of SCAN-B-rec referral form …
9:09 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Traceability note: The support for referral form generation in MeLuDI …
9:02 AM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
(In [4696]) Refs #1029. Updates due to version number change to …
9:02 AM Changeset [4696] by olle
Refs #1029. Updates due to version number change to "1.6.0-dev". …
8:46 AM net.sf.basedb.meludi edited by olle
(diff)
8:39 AM meludi-1.5.0.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.5.0
8:25 AM Changeset [4695] by olle
Creating tagged release MeLuDI v1.5.0

Mar 14, 2018:

2:52 PM Changeset [4694] by Nicklas Nordborg
Changes for future release Labenv 1.7
2:50 PM Milestone LabEnv v1.6 completed
See LabEnv extension page for more information.
2:50 PM PluginDownload edited by Nicklas Nordborg
Released Labenv 1.6 (diff)
2:49 PM net.sf.basedb.labenv edited by Nicklas Nordborg
Released Labenv 1.6 (diff)
2:48 PM labenv-1.6.tar.gz attached to net.sf.basedb.labenv by Nicklas Nordborg
Labenv 1.6
2:46 PM Changeset [4693] by Nicklas Nordborg
Tagging Labenv 1.6
2:45 PM Changeset [4692] by Nicklas Nordborg
Prepering to release Labenv 1.6

Mar 13, 2018:

3:26 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) closed by Nicklas Nordborg
fixed: (In [4691]) Fixes #1030: The "Force update counters" icon on the …
3:26 PM Changeset [4691] by Nicklas Nordborg
Fixes #1030: The "Force update counters" icon on the Reggie start page …
1:28 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) created by Nicklas Nordborg
For example, we have matched the genotype of several alignments to …

Mar 12, 2018:

2:49 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) created by Nicklas Nordborg
The time it takes for Reggie to update the counters on the start page …

Mar 9, 2018:

10:31 AM Ticket #911 (MeLuDI should support multiple projects) updated by olle
(In [4690]) Refs #911. Updates due to version number change to …
10:31 AM Changeset [4690] by olle
Refs #911. Updates due to version number change to "1.5.0". 1. …

Mar 8, 2018:

1:38 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
1:36 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) updated by olle
Status changed
Ticket accepted.
1:35 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) created by olle
MeLuDI should be adapted to support the SCAN-B-rec project. Initially …
1:14 PM Ticket #911 (MeLuDI should support multiple projects) closed by olle
fixed: Ticket closed as multiple project support to MeLuDI has been added, …

Feb 27, 2018:

1:12 PM Ticket #1025 (Release exporter should support StringTie data) updated by Nicklas Nordborg
(In [4689]) References #1025: Release exporter should support …
1:12 PM Changeset [4689] by Nicklas Nordborg
References #1025: Release exporter should support StringTie data …
1:08 PM Ticket #1025 (Release exporter should support StringTie data) updated by Nicklas Nordborg
Status changed
8:45 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
The A030DiaDat annotation was defined as: Tidigaste datum då …
8:28 AM Ticket #1021 (Add INCA 2.0 columns to the blacklist) updated by Nicklas Nordborg
The current blacklist contains: * PersonalNo * PERSNR * ENAMN * …
8:18 AM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) updated by Nicklas Nordborg
The following table should map the old names to the new names. || …
7:53 AM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) closed by Nicklas Nordborg
fixed: (In [4688]) Fixes #1027: External samples and Stratagene should not be …
7:53 AM Changeset [4688] by Nicklas Nordborg
Fixes #1027: External samples and Stratagene should not be part of …

Feb 26, 2018:

3:31 PM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) updated by Nicklas Nordborg
Status changed
3:31 PM Ticket #1017 (Remove code for handling optional MaskedSequences) closed by Nicklas Nordborg
fixed
3:02 PM Ticket #1026 (Create wizard for secondary analysis cleanup) updated by Nicklas Nordborg
(In [4687]) References #1026: Create wizard for secondary analysis …
3:02 PM Changeset [4687] by Nicklas Nordborg
References #1026: Create wizard for secondary analysis cleanup …
2:59 PM Ticket #1026 (Create wizard for secondary analysis cleanup) updated by Nicklas Nordborg
Status changed
1:30 PM Ticket #1028 (Add support for StringTie data) updated by Nicklas Nordborg
Description changed
1:25 PM Ticket #1028 (Add support for StringTie data) created by Nicklas Nordborg
The relax server is currently only supporting "cufflinks" raw …
12:58 PM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) created by Nicklas Nordborg
The genotyping qc rely on being able to identify samples belonging to …
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