Timeline



Mar 13, 2018:

3:26 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) closed by Nicklas Nordborg
fixed: (In [4691]) Fixes #1030: The "Force update counters" icon on the …
3:26 PM Changeset [4691] by Nicklas Nordborg
Fixes #1030: The "Force update counters" icon on the Reggie start page …
1:28 PM Ticket #1031 (Define a genotype QC flag that can be set on alignments that has been ...) created by Nicklas Nordborg
For example, we have matched the genotype of several alignments to …

Mar 12, 2018:

2:49 PM Ticket #1030 (The "Force update counters" icon on the Reggie start page feels ...) created by Nicklas Nordborg
The time it takes for Reggie to update the counters on the start page …

Mar 9, 2018:

10:31 AM Changeset [4690] by olle
Refs #911. Updates due to version number change to "1.5.0". 1. …

Mar 8, 2018:

1:35 PM Ticket #1029 (MeLuDI should be adapted to support the SCAN-B-rec project) created by olle
MeLuDI should be adapted to support the SCAN-B-rec project. Initially …
1:14 PM Ticket #911 (MeLuDI should support multiple projects) closed by olle
fixed: Ticket closed as multiple project support to MeLuDI has been added, …

Feb 27, 2018:

1:12 PM Changeset [4689] by Nicklas Nordborg
References #1025: Release exporter should support StringTie? data …
7:53 AM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) closed by Nicklas Nordborg
fixed: (In [4688]) Fixes #1027: External samples and Stratagene should not be …
7:53 AM Changeset [4688] by Nicklas Nordborg
Fixes #1027: External samples and Stratagene should not be part of …

Feb 26, 2018:

3:31 PM Ticket #1017 (Remove code for handling optional MaskedSequences) closed by Nicklas Nordborg
fixed
3:02 PM Changeset [4687] by Nicklas Nordborg
References #1026: Create wizard for secondary analysis cleanup …
1:25 PM Ticket #1028 (Add support for StringTie data) created by Nicklas Nordborg
The relax server is currently only supporting "cufflinks" raw …
12:58 PM Ticket #1027 (External samples and Stratagene should not be part of genotyping qc) created by Nicklas Nordborg
The genotyping qc rely on being able to identify samples belonging to …

Feb 23, 2018:

11:33 AM Changeset [4686] by Nicklas Nordborg
References #1017: Remove code for handling optional MaskedSequences?
9:21 AM Ticket #1026 (Create wizard for secondary analysis cleanup) created by Nicklas Nordborg
There are times when, for example, a demux or alignment needs to be …
9:04 AM Changeset [4685] by Nicklas Nordborg
References #1017: Remove code for handling optional MaskedSequences?
8:23 AM Ticket #1025 (Release exporter should support StringTie data) created by Nicklas Nordborg
The current implementation of the release exporter only supports …

Feb 22, 2018:

3:30 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
3:08 PM Ticket #1023 (Release exporter changes due to INCA 2.0) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
3:05 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
2:53 PM Ticket #1021 (Add INCA 2.0 columns to the blacklist) created by Nicklas Nordborg
INCA has been updated to version 2.0. Most variables have been …
9:37 AM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
More details about deleting alignments (diff)
9:31 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
9:30 AM reggie-4.15.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.15
9:22 AM Changeset [4684] by Nicklas Nordborg
Preparing for future release Reggie 4.16
9:20 AM Milestone Reggie v4.15 completed
See Reggie extension page for more information.
9:19 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.15 (diff)
9:18 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.15 (diff)
9:16 AM reggie-4.15.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.15
9:14 AM Ticket #1009 (Genotype quality control wizard) closed by Nicklas Nordborg
fixed
9:13 AM Changeset [4683] by Nicklas Nordborg
Tagging Reggie 4.15
9:12 AM Changeset [4682] by Nicklas Nordborg
Preparing to release Reggie 4.15

Feb 21, 2018:

3:46 PM Changeset [4681] by Nicklas Nordborg
References #1009: Genotype quality control wizard Removed the …
11:51 AM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
Update note related to #1015 (diff)
11:47 AM Changeset [4680] by Nicklas Nordborg
References #1015: Add masking step to Hisat pipeline Added a wizard …

Feb 20, 2018:

9:09 AM net.sf.basedb.reggie edited by Nicklas Nordborg
(diff)
9:07 AM net.sf.basedb.reggie/notes415 edited by Nicklas Nordborg
Added note about BASE update. (diff)

Feb 15, 2018:

11:41 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) closed by Nicklas Nordborg
fixed: (In [4679]) Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:41 AM Changeset [4679] by Nicklas Nordborg
Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
11:40 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) created by Nicklas Nordborg
The current value is novel-splicesites.tsv. This should be changed …

Feb 12, 2018:

9:53 AM Ticket #1018 (Updates to HaplotypeCaller step) closed by Nicklas Nordborg
fixed
9:52 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) closed by Nicklas Nordborg
fixed
9:51 AM Changeset [4678] by Nicklas Nordborg
References #1009: Genotype quality control wizard Layout changes to …
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