Timeline
Feb 22, 2018:
- 3:30 PM Ticket #1024 (Create annotation type definitions for INCA 2.0) created by
- INCA has been updated to version 2.0. Most variables have been …
- 3:08 PM Ticket #1023 (Release exporter changes due to INCA 2.0) created by
- INCA has been updated to version 2.0. Most variables have been …
- 3:05 PM Ticket #1022 (INCA import/statistics wizards changes due to INCA 2.0) created by
- INCA has been updated to version 2.0. Most variables have been …
- 2:53 PM Ticket #1021 (Add INCA 2.0 columns to the blacklist) created by
- INCA has been updated to version 2.0. Most variables have been …
- 9:37 AM net.sf.basedb.reggie/notes415 edited by
- More details about deleting alignments (diff)
- 9:31 AM net.sf.basedb.reggie/HistoryOfReggie edited by
- (diff)
- 9:23 AM Ticket #1017 (Remove code for handling optional MaskedSequences) updated by
-
Milestone changed
- 9:22 AM Changeset [4684] by
- Preparing for future release Reggie 4.16
- 9:20 AM Milestone Reggie v4.15 completed
- See Reggie extension page for more information.
- 9:19 AM PluginDownload edited by
- Released Reggie 4.15 (diff)
- 9:18 AM net.sf.basedb.reggie edited by
- Released Reggie 4.15 (diff)
- 9:14 AM Ticket #1009 (Genotype quality control wizard) closed by
- fixed
- 9:13 AM Changeset [4683] by
- Tagging Reggie 4.15
- 9:12 AM Changeset [4682] by
- Preparing to release Reggie 4.15
Feb 21, 2018:
- 3:46 PM Ticket #1009 (Genotype quality control wizard) updated by
- (In [4681]) References #1009: Genotype quality control wizard Removed …
- 3:46 PM Changeset [4681] by
- References #1009: Genotype quality control wizard Removed the …
- 11:55 AM Ticket #1017 (Remove code for handling optional MaskedSequences) updated by
-
Description changed
- 11:51 AM net.sf.basedb.reggie/notes415 edited by
- Update note related to #1015 (diff)
- 11:47 AM Ticket #1015 (Add masking step to Hisat pipeline) updated by
- (In [4680]) References #1015: Add masking step to Hisat pipeline …
- 11:47 AM Changeset [4680] by
- References #1015: Add masking step to Hisat pipeline Added a wizard …
Feb 20, 2018:
- 9:09 AM net.sf.basedb.reggie edited by
- (diff)
- 9:07 AM net.sf.basedb.reggie/notes415 edited by
- Added note about BASE update. (diff)
Feb 15, 2018:
- 11:41 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) closed by
- fixed: (In [4679]) Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
- 11:41 AM Changeset [4679] by
- Fixes #1020: Change novel-splicesite-outfile parameter to Hisat
- 11:40 AM Ticket #1020 (Change novel-splicesite-outfile parameter to Hisat) created by
-
The current value is
novel-splicesites.tsv. This should be changed …
Feb 12, 2018:
- 9:53 AM Ticket #1018 (Updates to HaplotypeCaller step) closed by
- fixed
- 9:52 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) closed by
- fixed
- 9:51 AM Ticket #1009 (Genotype quality control wizard) updated by
- (In [4678]) References #1009: Genotype quality control wizard Layout …
- 9:51 AM Changeset [4678] by
- References #1009: Genotype quality control wizard Layout changes to …
Feb 8, 2018:
- 1:49 PM net.sf.basedb.reggie/notes415 edited by
- Adding more update notes related to #1009, #1015, #1016 and #1018 (diff)
- 1:31 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) closed by
- fixed: (In [4677]) Fixes #1019: Secondary analysis wizards should sort items …
- 1:31 PM Changeset [4677] by
- Fixes #1019: Secondary analysis wizards should sort items by library …
- 1:17 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) updated by
-
Description changed
- 12:58 PM Ticket #1019 (Secondary analysis wizards should sort items by library plate order) created by
- The "Genotype quality control" wizard already uses this order since it …
- 12:51 PM Tickets #1015,1018 batch updated by
- (In [4676]) References #1018 and #1015. Adding "reads after mask" and …
- 12:51 PM Changeset [4676] by
- References #1018 and #1015. Adding "reads after mask" and HET …
- 12:46 PM Ticket #1018 (Updates to HaplotypeCaller step) updated by
- (In [4675]) References #1018: Updates to HaplotypeCaller step The …
- 12:46 PM Changeset [4675] by
- References #1018: Updates to HaplotypeCaller step The …
- 9:09 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4674]) References #1016: Implement Stringtie step in the Hisat …
- 9:09 AM Changeset [4674] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
- 8:33 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4673]) References #1016: Implement Stringtie step in the Hisat …
- 8:33 AM Changeset [4673] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
Feb 7, 2018:
- 11:51 AM Ticket #1018 (Updates to HaplotypeCaller step) updated by
- (In [4672]) References #1018: Updates to HaplotypeCaller step Updated …
- 11:51 AM Changeset [4672] by
- References #1018: Updates to HaplotypeCaller step Updated the SNP …
- 11:46 AM Ticket #1009 (Genotype quality control wizard) updated by
- (In [4671]) References #1009: Genotype quality control wizard Several …
- 11:46 AM Changeset [4671] by
- References #1009: Genotype quality control wizard Several changes to …
- 11:28 AM Ticket #1018 (Updates to HaplotypeCaller step) updated by
-
Description changed
Feb 5, 2018:
- 12:51 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4670]) References #1016: Implement Stringtie step in the Hisat …
- 12:51 PM Changeset [4670] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
Feb 2, 2018:
- 1:56 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4669]) References #1016: Implement Stringtie step in the Hisat …
- 1:56 PM Changeset [4669] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
Feb 1, 2018:
- 2:19 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4668]) References #1016: Implement Stringtie step in the Hisat …
- 2:19 PM Changeset [4668] by
- References #1016: Implement Stringtie step in the Hisat pipeline More …
- 1:01 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4667]) References #1016: Implement Stringtie step in the Hisat …
- 1:01 PM Changeset [4667] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
- 11:36 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4666]) References #1016: Implement Stringtie step in the Hisat …
- 11:36 AM Changeset [4666] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
Jan 31, 2018:
- 2:42 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4665]) References #1016: Implement Stringtie step in the Hisat …
- 2:42 PM Changeset [4665] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
Jan 30, 2018:
- 2:20 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4664]) References #1016: Implement Stringtie step in the Hisat …
- 2:20 PM Changeset [4664] by
- References #1016: Implement Stringtie step in the Hisat pipeline A …
Jan 29, 2018:
- 2:36 PM net.sf.basedb.reggie/notes415 created by
- Added update notes for Reggie 4.15
- 2:30 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4663]) References #1016: Implement Stringtie step in the Hisat …
- 2:30 PM Changeset [4663] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
- 1:57 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4662]) References #1016: Implement Stringtie step in the Hisat …
- 1:57 PM Changeset [4662] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
- 12:47 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4661]) References #1016: Implement Stringtie step in the Hisat …
- 12:47 PM Changeset [4661] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
- 8:36 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4660]) References #1016: Implement Stringtie step in the Hisat …
- 8:36 AM Changeset [4660] by
- References #1016: Implement Stringtie step in the Hisat pipeline The …
Jan 26, 2018:
- 1:35 PM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) updated by
- (In [4659]) References #1016: Implement Stringtie step in the Hisat …
- 1:35 PM Changeset [4659] by
- References #1016: Implement Stringtie step in the Hisat pipeline …
- 1:10 PM Tickets #1016,1018 batch updated by
-
Status changed
- 12:00 PM Ticket #1018 (Updates to HaplotypeCaller step) updated by
- (In [4658]) References #1018: Updates to HaplotypeCaller step Changed …
- 12:00 PM Changeset [4658] by
- References #1018: Updates to HaplotypeCaller step Changed the …
- 9:35 AM Ticket #1018 (Updates to HaplotypeCaller step) created by
- #1001 introduced the HaplotypeCaller step for genotyping. We should …
- 9:02 AM Ticket #1015 (Add masking step to Hisat pipeline) closed by
- fixed: (In [4657]) Fixes #1015: Add masking step to Hisat pipeline The …
- 9:02 AM Changeset [4657] by
- Fixes #1015: Add masking step to Hisat pipeline The PM_READS …
- 8:58 AM Ticket #1017 (Remove code for handling optional MaskedSequences) created by
- When the masking step has been introduced to the Hisat pipeline again …
Jan 24, 2018:
- 2:20 PM Ticket #1015 (Add masking step to Hisat pipeline) updated by
- (In [4656]) References #1015: Add masking step to Hisat pipeline The …
- 2:20 PM Changeset [4656] by
- References #1015: Add masking step to Hisat pipeline The masking is …
- 12:03 PM Ticket #1015 (Add masking step to Hisat pipeline) updated by
-
Status, Summary changed
- 9:08 AM Ticket #1016 (Implement Stringtie step in the Hisat pipeline) created by
- This is similar to the Cufflinks step in the legacy pipeline. It will …
- 9:05 AM Ticket #1015 (Add masking step to Hisat pipeline) created by
- The same masking that is done in the legacy pipeline before Tophat is …
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