Timeline



Nov 16, 2017:

1:48 PM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) updated by Nicklas Nordborg
Status changed
1:18 PM Ticket #1005 (External data filtering and mapping wizard) updated by Nicklas Nordborg
Description, Summary changed
1:17 PM Ticket #1006 (External data filtering and mapping wizard) created by Nicklas Nordborg
See for more information #1005. The file that is created by the …
1:14 PM Ticket #1005 (External data filtering and mapping wizard) created by Nicklas Nordborg
The use case is that we have a text file with some kind of personal …
12:58 PM Ticket #1004 (Auto-confirmation after demux should start Tophat/Hisat jobs ...) created by Nicklas Nordborg
The DemuxAutoConfirmer code that starts Tophat and Hisat alignment …
12:54 PM Ticket #1003 (Add support for disabling/pausing a pipeline) created by Nicklas Nordborg
This is mainly for auto-confirmation purposes. It would be useful to …
12:47 PM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
(In [4622]) References #1001: Add HaplotypeCaller to Hisat align step …
12:47 PM Changeset [4622] by Nicklas Nordborg
References #1001: Add HaplotypeCaller to Hisat align step VCF …
11:08 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
(In [4621]) References #1001: Add HaplotypeCaller to Hisat align step …
11:08 AM Changeset [4621] by Nicklas Nordborg
References #1001: Add HaplotypeCaller to Hisat align step Add …
8:10 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
(In [4620]) References #1001: Add HaplotypeCaller to Hisat align step …
8:10 AM Changeset [4620] by Nicklas Nordborg
References #1001: Add HaplotypeCaller to Hisat align step Added …

Nov 13, 2017:

2:41 PM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
(In [4619]) References #1001: Add HaplotypeCaller to Hisat align step …
2:41 PM Changeset [4619] by Nicklas Nordborg
References #1001: Add HaplotypeCaller to Hisat align step Added VCF …
12:41 PM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
(In [4618]) References #1001: Add HaplotypeCaller to Hisat align step …
12:41 PM Changeset [4618] by Nicklas Nordborg
References #1001: Add HaplotypeCaller to Hisat align step The VCF …
11:53 AM net.sf.basedb.reggie/notes413 created by Nicklas Nordborg
Create update notes for Reggie 4.13
11:06 AM Ticket #1002 (The release exporter should ignore directories and files that it has ...) updated by Nicklas Nordborg
Description changed
10:18 AM permission-denied.png attached to Ticket #1002 by Nicklas Nordborg
10:17 AM Ticket #1002 (The release exporter should ignore directories and files that it has ...) updated by Nicklas Nordborg
Description changed
10:14 AM Ticket #1002 (The release exporter should ignore directories and files that it has ...) created by Nicklas Nordborg
The release exporter is creating scripts for lining data files to …

Nov 10, 2017:

9:16 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
Description changed
9:16 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
Description changed
9:08 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) updated by Nicklas Nordborg
Description changed
9:03 AM Ticket #1001 (Add HaplotypeCaller to Hisat align step) created by Nicklas Nordborg
In the Hisat alignment pipeline we should also run HaplotypeCaller to …

Oct 25, 2017:

8:29 AM Changeset [4617] by Nicklas Nordborg
Preparing for future release Reggie 4.13.
8:27 AM Milestone Reggie v4.12 completed
See Reggie extension page for more information.
8:27 AM Ticket #997 (Implement new secondary analysis pipeline) closed by Nicklas Nordborg
fixed
8:27 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.12 (diff)
8:26 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.12 (diff)
8:24 AM reggie-4.12.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.12
8:22 AM Changeset [4616] by Nicklas Nordborg
Tagging Reggie 4.12
8:21 AM Changeset [4615] by Nicklas Nordborg
Preparing to release Reggie 4.12
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