Timeline



Sep 22, 2017:

1:34 PM Ticket #999 (Release exporter need to match Histology item based on partition date) closed by Nicklas Nordborg
fixed: (In [4586]) Fixes #999: Release exporter need to match Histology item …
1:34 PM Changeset [4586] by Nicklas Nordborg
Fixes #999: Release exporter need to match Histology item based on …
8:58 AM Ticket #998 (Fix problems with unselected list items) updated by Nicklas Nordborg
(In [4585]) References #998: Fix problems with unselected list items …
8:58 AM Changeset [4585] by Nicklas Nordborg
References #998: Fix problems with unselected list items Applying …
8:41 AM Changeset [4584] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.11 (based on tags/4.11.2).
8:39 AM Ticket #999 (Release exporter need to match Histology item based on partition date) created by Nicklas Nordborg
If a specimen has been partitioned twice with two Lysate and two …

Sep 21, 2017:

2:23 PM Ticket #998 (Fix problems with unselected list items) closed by Nicklas Nordborg
fixed: (In [4583]) Fixes #998: Fix problems with unselected list items The …
2:23 PM Changeset [4583] by Nicklas Nordborg
Fixes #998: Fix problems with unselected list items The problem was …
11:42 AM Ticket #998 (Fix problems with unselected list items) updated by Nicklas Nordborg
Priority changed
The following wizards do not work at all: * Lab protocols for …
10:55 AM Ticket #998 (Fix problems with unselected list items) updated by Nicklas Nordborg
Status, Milestone changed
10:54 AM Ticket #998 (Fix problems with unselected list items) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/2096 for some background information …

Sep 20, 2017:

10:59 AM Ticket #997 (Implement new secondary analysis pipeline) created by Nicklas Nordborg
The new secondary analysis pipeline should be implemented. It starts …
10:24 AM Changeset [4582] by Nicklas Nordborg
Preparing for future release Reggie 4.12
10:22 AM Milestone Reggie v4.11.2 completed
10:22 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.11.2 (diff)
10:20 AM reggie-4.11.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.11.2
10:18 AM Changeset [4581] by Nicklas Nordborg
Tagging Reggie 4.11.2
10:17 AM Changeset [4580] by Nicklas Nordborg
Preparing to release Reggie 4.11.2
10:12 AM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4579]) References #994: Level 3 exporter The exporter no longer …
10:12 AM Changeset [4579] by Nicklas Nordborg
References #994: Level 3 exporter The exporter no longer include …

Sep 19, 2017:

2:38 PM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4578]) References #994: Level 3 exporter Adding Level3Archive
2:38 PM Changeset [4578] by Nicklas Nordborg
References #994: Level 3 exporter Adding Level3Archive file server …
2:11 PM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4577]) References #994: Level 3 exporter Bash scripts for …
2:11 PM Changeset [4577] by Nicklas Nordborg
References #994: Level 3 exporter Bash scripts for creating the …

Sep 18, 2017:

11:26 AM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4576]) References #994: Level 3 exporter Creating and exporting …
11:26 AM Changeset [4576] by Nicklas Nordborg
References #994: Level 3 exporter Creating and exporting some …

Sep 15, 2017:

2:17 PM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4575]) References #994: Level 3 exporter FPKM file information …
2:17 PM Changeset [4575] by Nicklas Nordborg
References #994: Level 3 exporter FPKM file information is now …
1:26 PM Ticket #996 (The project archive service is running to often) closed by Nicklas Nordborg
fixed: (In [4574]) Fixes #996: The project archive service is running to often
1:26 PM Changeset [4574] by Nicklas Nordborg
Fixes #996: The project archive service is running to often
1:26 PM Ticket #995 (Project archive files are lacking access permission) closed by Nicklas Nordborg
fixed: (In [4573]) Fixes #995: Project archive files are lacking access permission
1:26 PM Changeset [4573] by Nicklas Nordborg
Fixes #995: Project archive files are lacking access permission
11:48 AM Ticket #996 (The project archive service is running to often) created by Nicklas Nordborg
The project archive service (#864) is responsible for setting access …
11:21 AM Ticket #995 (Project archive files are lacking access permission) created by Nicklas Nordborg
The background service that is responsible for setting access …
8:42 AM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4572]) References #994: Level 3 exporter The DataFilesFolder
8:42 AM Changeset [4572] by Nicklas Nordborg
References #994: Level 3 exporter The DataFilesFolder annotation is …
8:37 AM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
Status, Owner changed

Sep 14, 2017:

1:50 PM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
Milestone changed
1:49 PM Ticket #994 (Level 3 exporter) updated by Nicklas Nordborg
(In [4571]) References #994: Level 3 exporter Started to implement …
1:49 PM Changeset [4571] by Nicklas Nordborg
References #994: Level 3 exporter Started to implement the level 3 …

Sep 12, 2017:

1:08 PM Ticket #994 (Level 3 exporter) created by Nicklas Nordborg
An export plug-in should be developed that exports data from Relax to …

Sep 8, 2017:

2:01 PM Ticket #993 (Relative dates can be incorrect due to daylight savings time) closed by Nicklas Nordborg
fixed: (In [4570]) Fixes #993: Relative dates can be incorrect due to …
2:01 PM Changeset [4570] by Nicklas Nordborg
Fixes #993: Relative dates can be incorrect due to daylight savings …
9:55 AM Ticket #993 (Relative dates can be incorrect due to daylight savings time) created by Nicklas Nordborg
The release exporter (#938) is exporting some dates as number of days …

Sep 5, 2017:

9:53 AM Ticket #992 (NotEnoughRemainingQuantity in some cases when the remaining quantity ...) closed by Nicklas Nordborg
fixed: (In [4569]) Fixes #992: NotEnoughRemainingQuantity in some cases when …
9:53 AM Changeset [4569] by Nicklas Nordborg
Fixes #992: NotEnoughRemainingQuantity in some cases when the …
9:52 AM Ticket #990 (Release exporter looks for files in incorrect directory) updated by Nicklas Nordborg
Milestone changed

Sep 4, 2017:

8:35 AM Ticket #992 (NotEnoughRemainingQuantity in some cases when the remaining quantity ...) created by Nicklas Nordborg
See #875 for a description of the soft and hard limits for RNA …

Sep 1, 2017:

1:43 PM Ticket #991 (Add "unclassified" to list of allowed values for the PILOT_Subtype ...) closed by Nicklas Nordborg
fixed: (In [4568]) Fixes #991: Add "unclassified" to list of allowed values …
1:43 PM Changeset [4568] by Nicklas Nordborg
Fixes #991: Add "unclassified" to list of allowed values for the …
1:27 PM Ticket #991 (Add "unclassified" to list of allowed values for the PILOT_Subtype ...) created by Nicklas Nordborg
It seems like the pilot report script can generate this value as well …
1:24 PM Ticket #990 (Release exporter looks for files in incorrect directory) closed by Nicklas Nordborg
fixed: (In [4567]) Fixes #990: Release exporter looks for files in incorrect …
1:24 PM Changeset [4567] by Nicklas Nordborg
Fixes #990: Release exporter looks for files in incorrect directory
8:53 AM Ticket #990 (Release exporter looks for files in incorrect directory) updated by Nicklas Nordborg
Milestone changed
8:52 AM Ticket #990 (Release exporter looks for files in incorrect directory) created by Nicklas Nordborg
A side-effect of implementing ticket #981 causes the release exporter …

Aug 31, 2017:

9:27 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4566]) References #983: Merge the Tophat alignment and Cufflinks …
9:27 AM Changeset [4566] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
9:25 AM Milestone Reggie v4.11.1 completed

Aug 29, 2017:

2:40 PM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
2:40 PM reggie-4.11.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.11
2:37 PM Changeset [4565] by Nicklas Nordborg
Preparing for future release Reggie 4.12
2:35 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.11.1 (diff)
2:34 PM reggie-4.11.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.11.1
2:33 PM Changeset [4564] by Nicklas Nordborg
Tagging Reggie 4.11.1
2:32 PM Changeset [4563] by Nicklas Nordborg
Preparing to release Reggie 4.11.1
2:32 PM Ticket #989 (Installation of Reggie 4.11 fails) closed by Nicklas Nordborg
fixed: (In [4562]) Fixes #989: Installation of Reggie 4.11 fails
2:32 PM Changeset [4562] by Nicklas Nordborg
Fixes #989: Installation of Reggie 4.11 fails
2:28 PM Ticket #989 (Installation of Reggie 4.11 fails) updated by Nicklas Nordborg
Milestone changed
2:28 PM Milestone Reggie v4.11 completed
See Reggie extension page for more information.
2:27 PM Ticket #989 (Installation of Reggie 4.11 fails) created by Nicklas Nordborg
I get an error message: […] I think the reasons is that the …
2:07 PM Changeset [4561] by Nicklas Nordborg
Preparing for future release Reggie 4.12
2:05 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.11 (diff)
2:05 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.11 (diff)
2:00 PM Changeset [4560] by Nicklas Nordborg
Tagging Reggie 4.11
1:59 PM Changeset [4559] by Nicklas Nordborg
Resetting debug flag.
1:58 PM Changeset [4558] by Nicklas Nordborg
Preparing to release Reggie 4.11
1:48 PM net.sf.basedb.relax edited by Nicklas Nordborg
Released Relax 1.1-beta-1 (diff)
1:45 PM Changeset [4557] by Nicklas Nordborg
Tagging Relax 1.1-beta-1
1:44 PM Changeset [4556] by Nicklas Nordborg
Preparing to release Relax 1.1-beta-1
1:42 PM Ticket #988 (New pool layout: 2x16 with offset) closed by Nicklas Nordborg
fixed: (In [4555]) Fixes #988: New pool layout: 2x16 with offset
1:42 PM Changeset [4555] by Nicklas Nordborg
Fixes #988: New pool layout: 2x16 with offset
12:42 PM Ticket #988 (New pool layout: 2x16 with offset) updated by Nicklas Nordborg
Status changed
12:42 PM Ticket #988 (New pool layout: 2x16 with offset) created by Nicklas Nordborg
2 pool x 16 samples (offset to columns 3-4 and 5-6)
9:20 AM Ticket #987 (Cohort exporter plugin) updated by Nicklas Nordborg
(In [4554]) References #987: Cohort exporter plugin Added checks for …
9:20 AM Changeset [4554] by Nicklas Nordborg
References #987: Cohort exporter plugin Added checks for an active …

Aug 28, 2017:

11:10 AM Ticket #987 (Cohort exporter plugin) updated by Nicklas Nordborg
(In [4553]) References #987: Cohort exporter plugin Added the "Cohort …
11:10 AM Changeset [4553] by Nicklas Nordborg
References #987: Cohort exporter plugin Added the "Cohort exporter" …
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