Timeline



Jul 4, 2017:

1:56 PM Ticket #986 (Redesign the release exporter plug-in to make the cohort tables optional) closed by Nicklas Nordborg
fixed: (In [4552]) Fixes #986: Redesign the release exporter plug-in to make …
1:56 PM Changeset [4552] by Nicklas Nordborg
Fixes #986: Redesign the release exporter plug-in to make the cohort …
9:49 AM Ticket #986 (Redesign the release exporter plug-in to make the cohort tables optional) updated by Nicklas Nordborg
Status changed
9:49 AM Ticket #986 (Redesign the release exporter plug-in to make the cohort tables optional) created by Nicklas Nordborg
There are currently options implemented for exporting JSON files and …

Jul 3, 2017:

11:35 AM Tickets #973,​977,​978 batch updated by Nicklas Nordborg
fixed
9:15 AM net.sf.basedb.reggie/notes411 created by Nicklas Nordborg
Added wiki page with update notes for Reggie 4.11
8:52 AM Ticket #981 (Project archive need to use subfolders per site) closed by Nicklas Nordborg
fixed: (In [4551]) Fixes #981: Project archive need to use subfolders per …
8:52 AM Changeset [4551] by Nicklas Nordborg
Fixes #981: Project archive need to use subfolders per site This …

Jun 30, 2017:

10:39 AM Ticket #981 (Project archive need to use subfolders per site) updated by Nicklas Nordborg
Status changed
10:38 AM Ticket #982 (Re-design the current pipeline) closed by Nicklas Nordborg
fixed
10:38 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) closed by Nicklas Nordborg
fixed: Seems to work now.
10:37 AM Ticket #971 (Storage box creation wizard) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #971: Storage box creation wizard The storage box …
10:37 AM Changeset [4550] by Nicklas Nordborg
Fixes #971: Storage box creation wizard The storage box creation …

Jun 29, 2017:

2:06 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4549]) References #983: Merge the Tophat alignment and Cufflinks …
2:06 PM Changeset [4549] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
1:39 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4548]) References #983: Merge the Tophat alignment and Cufflinks …
1:39 PM Changeset [4548] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
11:22 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4547]) References #983: Merge the Tophat alignment and Cufflinks …
11:22 AM Changeset [4547] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:46 AM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
(In [4546]) References #971: Storage box creation wizard Added a …
8:46 AM Changeset [4546] by Nicklas Nordborg
References #971: Storage box creation wizard Added a warning message …

Jun 28, 2017:

8:36 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4545]) References #983: Merge the Tophat alignment and Cufflinks …
8:36 AM Changeset [4545] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:26 AM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
(In [4544]) References #971: Storage box creation wizard Addad …
8:26 AM Changeset [4544] by Nicklas Nordborg
References #971: Storage box creation wizard Addad "Storage box …

Jun 27, 2017:

1:12 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4543]) References #983: Merge the Tophat alignment and Cufflinks …
1:12 PM Changeset [4543] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:25 AM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Status changed

Jun 26, 2017:

12:54 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
(In [4542]) References #983: Merge the Tophat alignment and Cufflinks …
12:53 PM Changeset [4542] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:45 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) updated by Nicklas Nordborg
Status changed
8:45 AM Ticket #979 (Define and import Pilot report annotations) closed by Nicklas Nordborg
fixed
8:44 AM Ticket #984 (Remove the raw data import step for Cufflinks data) closed by Nicklas Nordborg
fixed
8:33 AM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
(In [4541]) References #984: Remove the raw data import step for …
8:33 AM Changeset [4541] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …

Jun 22, 2017:

2:28 PM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
(In [4540]) References #984: Remove the raw data import step for …
2:28 PM Changeset [4540] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …
12:46 PM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
(In [4539]) References #984: Remove the raw data import step for …
12:46 PM Changeset [4539] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …
10:38 AM Ticket #984 (Remove the raw data import step for Cufflinks data) updated by Nicklas Nordborg
Status changed
10:37 AM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) closed by Nicklas Nordborg
fixed: (In [4538]) Fixes #985: Re-design the gene report generator so that it …
10:37 AM Changeset [4538] by Nicklas Nordborg
Fixes #985: Re-design the gene report generator so that it can produce …

Jun 21, 2017:

2:22 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) updated by Nicklas Nordborg
Status changed
2:22 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) updated by Nicklas Nordborg
Description changed
2:22 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) updated by Nicklas Nordborg
Summary changed
Turned out that the pilot report is already using only the cufflinks …
2:20 PM Ticket #979 (Define and import Pilot report annotations) updated by Nicklas Nordborg
(In [4537]) References #979: Define and import Pilot report …
2:20 PM Changeset [4537] by Nicklas Nordborg
References #979: Define and import Pilot report annotations The pilot …
11:29 AM Ticket #979 (Define and import Pilot report annotations) updated by Nicklas Nordborg
(In [4536]) References #979: Define and import Pilot report …
11:29 AM Changeset [4536] by Nicklas Nordborg
References #979: Define and import Pilot report annotations Added 11 …
9:19 AM Ticket #979 (Define and import Pilot report annotations) updated by Nicklas Nordborg
Status changed
8:58 AM Ticket #980 (Remove Tophat-alignment data files from release exporter) closed by Nicklas Nordborg
fixed: (In [4535]) Fixes #980: Remove Tophat-alignment data files from …
8:58 AM Changeset [4535] by Nicklas Nordborg
Fixes #980: Remove Tophat-alignment data files from release exporter …
8:52 AM Ticket #980 (Remove Tophat-alignment data files from release exporter) updated by Nicklas Nordborg
Status changed
8:52 AM Tickets #977,​978 batch updated by Nicklas Nordborg
(In [4534]) References #977 and #978. Display alarms also on the "Lab …
8:52 AM Changeset [4534] by Nicklas Nordborg
References #977 and #978. Display alarms also on the "Lab sensor info" …

Jun 20, 2017:

1:55 PM Ticket #982 (Re-design the current pipeline) updated by Nicklas Nordborg
Description changed
1:53 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) created by Nicklas Nordborg
This is part of #982. The pilot and gene report plug-in currently …
1:50 PM Ticket #984 (Remove the raw data import step for Cufflinks data) created by Nicklas Nordborg
This is part of #982. The import is currently triggered automatically …
1:48 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) created by Nicklas Nordborg
This is part of #982. The Tophat and Cufflinks steps in the secondary …
1:36 PM Ticket #982 (Re-design the current pipeline) created by Nicklas Nordborg
The current pipeline is going to be replaced by a new and more modern …
1:27 PM Ticket #981 (Project archive need to use subfolders per site) created by Nicklas Nordborg
The main reason is that we need to be able to split the data onto …
1:21 PM Ticket #980 (Remove Tophat-alignment data files from release exporter) created by Nicklas Nordborg
We need to save disk space. Not copying BAM files will save a lot.
1:18 PM Ticket #979 (Define and import Pilot report annotations) created by Nicklas Nordborg
Scores and other values that are calculated as part of generating the …
1:05 PM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Milestone changed
12:59 PM Changeset [4533] by Nicklas Nordborg
Preparing for future release Relax 1.1
12:58 PM PluginDownload edited by Nicklas Nordborg
Released Relax 1.0 (diff)
12:55 PM Milestone Relax v1.0 completed
See Relax extension page for more information.
12:54 PM relax-1.0.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.0
12:54 PM net.sf.basedb.relax created by Nicklas Nordborg
Released Relax 1.0
11:54 AM Changeset [4532] by Nicklas Nordborg
Tagging Relax 1.0
11:53 AM Changeset [4531] by Nicklas Nordborg
Preparing to release Relax 1.0
11:48 AM Changeset [4530] by Nicklas Nordborg
Preparing for future release Reggie 4.11
11:46 AM Milestone Reggie v4.10 completed
See Reggie extension page for more information.
11:45 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:44 AM net.sf.basedb.reggie edited by Nicklas Nordborg
(diff)
11:43 AM reggie-4.10.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.10
11:43 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:39 AM Changeset [4529] by Nicklas Nordborg
Tagging Reggie 4.10
11:38 AM Changeset [4528] by Nicklas Nordborg
Preparing to release Reggie 4.10
11:34 AM Ticket #940 (Release importer) closed by Nicklas Nordborg
fixed
11:34 AM Ticket #938 (Release exporter should export files that can be imported on a ...) closed by Nicklas Nordborg
fixed
11:22 AM Ticket #971 (Storage box creation wizard) updated by Nicklas Nordborg
Description changed
8:29 AM Ticket #978 (Re-design the Lab sensor alarms page) updated by Nicklas Nordborg
(In [4527]) References #978: Re-design the Lab sensor alarms page
8:29 AM Changeset [4527] by Nicklas Nordborg
References #978: Re-design the Lab sensor alarms page
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