Timeline



Jun 30, 2017:

10:38 AM Ticket #982 (Re-design the current pipeline) closed by Nicklas Nordborg
fixed
10:38 AM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) closed by Nicklas Nordborg
fixed: Seems to work now.
10:37 AM Ticket #971 (Storage box creation wizard) closed by Nicklas Nordborg
fixed: (In [4550]) Fixes #971: Storage box creation wizard The storage box …
10:37 AM Changeset [4550] by Nicklas Nordborg
Fixes #971: Storage box creation wizard The storage box creation …

Jun 29, 2017:

2:06 PM Changeset [4549] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
1:39 PM Changeset [4548] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
11:22 AM Changeset [4547] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:46 AM Changeset [4546] by Nicklas Nordborg
References #971: Storage box creation wizard Added a warning message …

Jun 28, 2017:

8:36 AM Changeset [4545] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:26 AM Changeset [4544] by Nicklas Nordborg
References #971: Storage box creation wizard Addad "Storage box …

Jun 27, 2017:

1:12 PM Changeset [4543] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …

Jun 26, 2017:

12:53 PM Changeset [4542] by Nicklas Nordborg
References #983: Merge the Tophat alignment and Cufflinks job to a …
8:45 AM Ticket #979 (Define and import Pilot report annotations) closed by Nicklas Nordborg
fixed
8:44 AM Ticket #984 (Remove the raw data import step for Cufflinks data) closed by Nicklas Nordborg
fixed
8:33 AM Changeset [4541] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …

Jun 22, 2017:

2:28 PM Changeset [4540] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …
12:46 PM Changeset [4539] by Nicklas Nordborg
References #984: Remove the raw data import step for Cufflinks data …
10:37 AM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) closed by Nicklas Nordborg
fixed: (In [4538]) Fixes #985: Re-design the gene report generator so that it …
10:37 AM Changeset [4538] by Nicklas Nordborg
Fixes #985: Re-design the gene report generator so that it can produce …

Jun 21, 2017:

2:20 PM Changeset [4537] by Nicklas Nordborg
References #979: Define and import Pilot report annotations The pilot …
11:29 AM Changeset [4536] by Nicklas Nordborg
References #979: Define and import Pilot report annotations Added 11 …
8:58 AM Ticket #980 (Remove Tophat-alignment data files from release exporter) closed by Nicklas Nordborg
fixed: (In [4535]) Fixes #980: Remove Tophat-alignment data files from …
8:58 AM Changeset [4535] by Nicklas Nordborg
Fixes #980: Remove Tophat-alignment data files from release exporter …
8:52 AM Changeset [4534] by Nicklas Nordborg
References #977 and #978. Display alarms also on the "Lab sensor info" …

Jun 20, 2017:

1:53 PM Ticket #985 (Re-design the gene report generator so that it can produce the report ...) created by Nicklas Nordborg
This is part of #982. The pilot and gene report plug-in currently …
1:50 PM Ticket #984 (Remove the raw data import step for Cufflinks data) created by Nicklas Nordborg
This is part of #982. The import is currently triggered automatically …
1:48 PM Ticket #983 (Merge the Tophat alignment and Cufflinks job to a single job) created by Nicklas Nordborg
This is part of #982. The Tophat and Cufflinks steps in the secondary …
1:36 PM Ticket #982 (Re-design the current pipeline) created by Nicklas Nordborg
The current pipeline is going to be replaced by a new and more modern …
1:27 PM Ticket #981 (Project archive need to use subfolders per site) created by Nicklas Nordborg
The main reason is that we need to be able to split the data onto …
1:21 PM Ticket #980 (Remove Tophat-alignment data files from release exporter) created by Nicklas Nordborg
We need to save disk space. Not copying BAM files will save a lot.
1:18 PM Ticket #979 (Define and import Pilot report annotations) created by Nicklas Nordborg
Scores and other values that are calculated as part of generating the …
12:59 PM Changeset [4533] by Nicklas Nordborg
Preparing for future release Relax 1.1
12:58 PM PluginDownload edited by Nicklas Nordborg
Released Relax 1.0 (diff)
12:55 PM Milestone Relax v1.0 completed
See Relax extension page for more information.
12:54 PM relax-1.0.tar.gz attached to net.sf.basedb.relax by Nicklas Nordborg
Relax 1.0
12:54 PM net.sf.basedb.relax created by Nicklas Nordborg
Released Relax 1.0
11:54 AM Changeset [4532] by Nicklas Nordborg
Tagging Relax 1.0
11:53 AM Changeset [4531] by Nicklas Nordborg
Preparing to release Relax 1.0
11:48 AM Changeset [4530] by Nicklas Nordborg
Preparing for future release Reggie 4.11
11:46 AM Milestone Reggie v4.10 completed
See Reggie extension page for more information.
11:45 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:44 AM net.sf.basedb.reggie edited by Nicklas Nordborg
(diff)
11:43 AM reggie-4.10.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.10
11:43 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.10 (diff)
11:39 AM Changeset [4529] by Nicklas Nordborg
Tagging Reggie 4.10
11:38 AM Changeset [4528] by Nicklas Nordborg
Preparing to release Reggie 4.10
11:34 AM Ticket #940 (Release importer) closed by Nicklas Nordborg
fixed
11:34 AM Ticket #938 (Release exporter should export files that can be imported on a ...) closed by Nicklas Nordborg
fixed
8:29 AM Changeset [4527] by Nicklas Nordborg
References #978: Re-design the Lab sensor alarms page

Jun 19, 2017:

1:48 PM Ticket #978 (Re-design the Lab sensor alarms page) created by Nicklas Nordborg
Make similar changes to this page as made in #977 to the Lab sensor …
8:45 AM Changeset [4526] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Changed the daily …

Jun 15, 2017:

2:05 PM Changeset [4525] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Added a link for …
9:49 AM Changeset [4524] by Nicklas Nordborg
References #977: Re-design the Lab-sensor info page Sensor …
8:20 AM Ticket #977 (Re-design the Lab-sensor info page) created by Nicklas Nordborg
This could be a table that displays information about the configured …

Jun 13, 2017:

11:39 AM Changeset [4523] by Nicklas Nordborg
References #969: Changes to Frozen tissue date import wizard Removed …
9:35 AM Ticket #975 (Clean up unused javascript code) closed by Nicklas Nordborg
fixed: (In [4522]) Fixes #975: Clean up unused javascript code
9:35 AM Changeset [4522] by Nicklas Nordborg
Fixes #975: Clean up unused javascript code
8:57 AM Ticket #976 (Running 'ant update-version' doesn't update the version number in labenv.js) closed by Nicklas Nordborg
fixed: (In [4521]) Fixes #976: Running 'ant update-version' doesn't update …
8:57 AM Changeset [4521] by Nicklas Nordborg
Fixes #976: Running 'ant update-version' doesn't update the version …
8:56 AM Ticket #976 (Running 'ant update-version' doesn't update the version number in labenv.js) created by Nicklas Nordborg
8:53 AM Ticket #974 (A project should not be required) closed by Nicklas Nordborg
fixed: (In [4520]) Fixes #974: A project should not be required
8:53 AM Changeset [4520] by Nicklas Nordborg
Fixes #974: A project should not be required
8:52 AM Ticket #975 (Clean up unused javascript code) created by Nicklas Nordborg
The labenv.js file is full of code that was copied from Reggie. Much …
8:50 AM Ticket #974 (A project should not be required) created by Nicklas Nordborg
If going to a LabEnv wizard without an active project an error …
8:45 AM Changeset [4519] by Nicklas Nordborg
References #973: Update to Hibernate 5.2 and BASE 3.12 Changed to …

Jun 12, 2017:

10:27 AM Ticket #973 (Update to Hibernate 5.2 and BASE 3.12) created by Nicklas Nordborg
LabEnv? doesn't work with Hibernate 5.2. It seems like nothing is …

Jun 7, 2017:

8:35 AM Changeset [4518] by Nicklas Nordborg
References #938. Fixed echo commands in scripts so that variables …

Jun 2, 2017:

1:37 PM Ticket #968 (Keep LiasonComment in some cases when destructing retracted items) closed by Nicklas Nordborg
fixed
1:12 PM Ticket #969 (Changes to Frozen tissue date import wizard) closed by Nicklas Nordborg
fixed

Jun 1, 2017:

2:32 PM Ticket #972 (Fix problems with bad URLs) closed by Nicklas Nordborg
fixed: (In [4517]) Fixes #972: Fix problems with bad URLs Found the problem …
2:32 PM Changeset [4517] by Nicklas Nordborg
Fixes #972: Fix problems with bad URLs Found the problem in the …
10:59 AM Ticket #972 (Fix problems with bad URLs) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/2089
9:21 AM Ticket #970 (Specimen tube registration: Limit the value in "Number of tubes" to a ...) closed by Nicklas Nordborg
fixed: (In [4516]) Fixes #970: Specimen tube registration: Limit the value in …
9:21 AM Changeset [4516] by Nicklas Nordborg
Fixes #970: Specimen tube registration: Limit the value in "Number of …
8:53 AM Ticket #939 (Installation wizard for Relax server) closed by Nicklas Nordborg
fixed
8:52 AM Changeset [4515] by Nicklas Nordborg
References #939: Installation wizard for Relax server Added a raw …
8:33 AM Changeset [4514] by Nicklas Nordborg
References #939: Installation wizard for Relax server Checking that …
8:29 AM Ticket #971 (Storage box creation wizard) created by Nicklas Nordborg
We should implement a wizard that can be used to create new storage …
8:19 AM Ticket #970 (Specimen tube registration: Limit the value in "Number of tubes" to a ...) created by Nicklas Nordborg
If someone accidentally puts in a very high number here it will cause …
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