Timeline



Apr 21, 2017:

2:24 PM Changeset [4463] by Nicklas Nordborg
References #940: Release importer Added support for importing …
2:22 PM Changeset [4462] by Nicklas Nordborg
References #938. Added support for exporting annotation type …
1:49 PM Changeset [4461] by Nicklas Nordborg
References #962 and #938. The release exporter is now exporting the …
11:41 AM Changeset [4460] by Nicklas Nordborg
References #962: Add ReferenceDate? annotation to Case Updated the …
9:33 AM Changeset [4459] by Nicklas Nordborg
References #962: Add ReferenceDate? annotation to Case Updated the …
9:08 AM Changeset [4458] by Nicklas Nordborg
References #962: Add ReferenceDate? annotation to Case Added …

Apr 20, 2017:

1:44 PM Ticket #962 (Add ReferenceDate annotation to Case) created by Nicklas Nordborg
We need a reference date that can be used as the baseline for creating …
1:19 PM Ticket #961 (The partition wizard should set MultPieces to false if the checkbox is ...) closed by Nicklas Nordborg
fixed: (In [4457]) Fixes #961: The partition wizard should set MultPieces? to …
1:19 PM Changeset [4457] by Nicklas Nordborg
Fixes #961: The partition wizard should set MultPieces? to false if the …
1:05 PM Ticket #961 (The partition wizard should set MultPieces to false if the checkbox is ...) created by Nicklas Nordborg
Existing Lysate items with no value should be updated manually with a …

Apr 11, 2017:

9:43 AM Ticket #941 (Create the Relax extension) closed by Nicklas Nordborg
fixed
9:43 AM Ticket #934 (Improve API for uploading files) closed by Nicklas Nordborg
fixed
9:42 AM Ticket #960 (Switch to BASE 3.11) closed by Nicklas Nordborg
fixed: (In [4456]) Fixes #960: Switch to BASE 3.11
9:42 AM Changeset [4456] by Nicklas Nordborg
Fixes #960: Switch to BASE 3.11
9:39 AM Ticket #933 (Add support for exporting files to a remote server to the Release ...) closed by Nicklas Nordborg
fixed
9:39 AM Ticket #945 (Re-design the installation wizard) closed by Nicklas Nordborg
fixed
9:39 AM Ticket #957 (Add support for SHA-256 fingerprints on file servers) closed by Nicklas Nordborg
fixed
9:38 AM Ticket #956 (Add support for SHA-256 fingerprints on file servers) closed by Nicklas Nordborg
fixed

Apr 10, 2017:

3:23 PM Ticket #960 (Switch to BASE 3.11) created by Nicklas Nordborg
We require OpenGrid 1.1 due to #933 and OpenGrid 1.1 require BASE …
3:19 PM Ticket #959 (Switch to BASE 3.11) closed by Nicklas Nordborg
fixed
3:16 PM Changeset [4455] by Nicklas Nordborg
References #958: Switch to BASE 3.11 Updated README.
3:15 PM Changeset [4454] by Nicklas Nordborg
References #959: Switch to BASE 3.11 Updated README.
3:15 PM Changeset [4453] by Nicklas Nordborg
References #956: Add support for SHA-256 fingerprints on file servers …
2:54 PM Changeset [4452] by Nicklas Nordborg
Fixes #959: Switch to BASE 3.11
2:53 PM Ticket #959 (Switch to BASE 3.11) created by Nicklas Nordborg
#956 requires BASE 3.11.
2:50 PM net.sf.basedb.opengrid/install edited by Nicklas Nordborg
Updates related to #957. (diff)
2:47 PM Changeset [4451] by Nicklas Nordborg
References #957: Add support for SHA-256 fingerprints on file servers …
2:34 PM Changeset [4450] by Nicklas Nordborg
References #957: Add support for SHA-256 fingerprints on file servers …
2:08 PM Ticket #958 (Switch to BASE 3.11) closed by Nicklas Nordborg
fixed: (In [4449]) Fixes #958: Switch to BASE 3.11
2:08 PM Changeset [4449] by Nicklas Nordborg
Fixes #958: Switch to BASE 3.11
2:04 PM Ticket #958 (Switch to BASE 3.11) created by Nicklas Nordborg
#957 requires BASE 3.11.
12:48 PM Ticket #957 (Add support for SHA-256 fingerprints on file servers) created by Nicklas Nordborg
http://base.thep.lu.se/ticket/2075
12:48 PM Ticket #956 (Add support for SHA-256 fingerprints on file servers) created by Nicklas Nordborg
http://base.thep.lu.se/ticket/2075

Apr 7, 2017:

11:52 AM Changeset [4448] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
9:26 AM Changeset [4447] by Nicklas Nordborg
References #940: Release importer Resuming after a pause should now …

Apr 6, 2017:

2:55 PM Changeset [4446] by Nicklas Nordborg
References #940: Release importer The importer now has support for …
1:18 PM Changeset [4445] by Nicklas Nordborg
References #940: Release importer Added support for pausing the import.

Apr 4, 2017:

11:52 AM Changeset [4444] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
10:58 AM Changeset [4443] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
9:24 AM Changeset [4442] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Apr 3, 2017:

2:43 PM Changeset [4441] by Nicklas Nordborg
References #940: Release importer Added some counters used for a …
8:56 AM Changeset [4440] by Nicklas Nordborg
References #940: Release importer Added support for resuming the …

Mar 31, 2017:

1:42 PM Changeset [4439] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
12:43 PM Changeset [4438] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
10:54 AM Changeset [4437] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 30, 2017:

9:14 AM Changeset [4436] by Nicklas Nordborg
References #940: Release importer Raw bioassays are created with the …
9:13 AM Changeset [4435] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 29, 2017:

2:22 PM Changeset [4434] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
2:13 PM Changeset [4433] by Nicklas Nordborg
References #940: Release importer Removed debug code. Default value …
9:09 AM Changeset [4432] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
9:08 AM Changeset [4431] by Nicklas Nordborg
References #933: Add support for exporting files to a remote server to …

Mar 28, 2017:

3:27 PM Changeset [4430] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
12:41 PM Changeset [4429] by Nicklas Nordborg
References #940: Release importer The release version number is now …
9:50 AM Changeset [4428] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 27, 2017:

2:54 PM Changeset [4427] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
11:46 AM Changeset [4426] by Nicklas Nordborg
Merged Reggie 4.9.3 to the trunk.
11:37 AM Milestone Reggie v4.9.3 completed
Bug fixes for Reggie 4.9.2. Revision Log: …
11:37 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.9.3 (diff)
11:37 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.9.3 (diff)
11:36 AM reggie-4.9.3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.9.3
11:34 AM Changeset [4425] by Nicklas Nordborg
Tagging Reggie 4.9.3
11:33 AM Changeset [4424] by Nicklas Nordborg
Preparing to release Reggie 4.9.3
11:30 AM Changeset [4423] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 24, 2017:

2:59 PM Changeset [4422] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
10:39 AM Changeset [4421] by Nicklas Nordborg
References #938: Release exporter should export files that can be …

Mar 23, 2017:

1:55 PM Changeset [4420] by Nicklas Nordborg
References #938: Release exporter should export files that can be …
8:35 AM Ticket #953 (Remove "unmapped.bam" file from Tophat results) closed by Nicklas Nordborg
fixed: (In [4419]) Fixes #953: Remove "unmapped.bam" file from Tophat results …
8:35 AM Changeset [4419] by Nicklas Nordborg
Fixes #953: Remove "unmapped.bam" file from Tophat results Remove the …

Mar 22, 2017:

2:14 PM Ticket #955 (fix_cufflinks_tracking_id.sh should be executed on transcripts.gtf) closed by Nicklas Nordborg
fixed: (In [4418]) Fixes #955: fix_cufflinks_tracking_id.sh should be …
2:14 PM Changeset [4418] by Nicklas Nordborg
Fixes #955: fix_cufflinks_tracking_id.sh should be executed on …
1:26 PM Ticket #954 (The AddOrReplaceReadGroup step in Tophat alignment should replace ...) closed by Nicklas Nordborg
fixed: (In [4417]) Fixes #954: The AddOrReplaceReadGroup? step in Tophat …
1:26 PM Changeset [4417] by Nicklas Nordborg
Fixes #954: The AddOrReplaceReadGroup? step in Tophat alignment should …
12:43 PM Ticket #955 (fix_cufflinks_tracking_id.sh should be executed on transcripts.gtf) created by Nicklas Nordborg
After Cufflinks has produced the result files we run the …
12:37 PM Ticket #954 (The AddOrReplaceReadGroup step in Tophat alignment should replace ...) created by Nicklas Nordborg
This will make it easier to publish data files to external researchers …
12:35 PM Ticket #953 (Remove "unmapped.bam" file from Tophat results) created by Nicklas Nordborg
This file is not used anymore and just takes up space on the disk. …
12:27 PM Ticket #952 (The "Register Caliper files" checkbox in the "Library registration" ...) closed by Nicklas Nordborg
fixed: (In [4416]) Fixes #952: The "Register Caliper files" checkbox in the …
12:27 PM Changeset [4416] by Nicklas Nordborg
Fixes #952: The "Register Caliper files" checkbox in the "Library …
12:25 PM Ticket #952 (The "Register Caliper files" checkbox in the "Library registration" ...) created by Nicklas Nordborg
This checkbox is currently checked except for the NeoPrep track, but …
12:23 PM Ticket #950 (New pool layouts: 1x24 and 2x24 with offset) closed by Nicklas Nordborg
fixed: (In [4415]) Fixes #950: New pool layouts: 1x24 and 2x24 with offset
12:23 PM Changeset [4415] by Nicklas Nordborg
Fixes #950: New pool layouts: 1x24 and 2x24 with offset
8:30 AM Ticket #951 (BA PDF file should be optional in the "mRNA registration and quality ...) closed by Nicklas Nordborg
fixed: (In [4414]) Fixes #951: BA PDF file should be optional in the "mRNA …
8:30 AM Changeset [4414] by Nicklas Nordborg
Fixes #951: BA PDF file should be optional in the "mRNA registration …
8:15 AM Ticket #951 (BA PDF file should be optional in the "mRNA registration and quality ...) created by Nicklas Nordborg
This is currently a required field, but the BioAnalyzer step is not …
8:11 AM Ticket #950 (New pool layouts: 1x24 and 2x24 with offset) created by Nicklas Nordborg
Now that we are going back to manual library preparation we are not …
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