Timeline



Apr 22, 2016:

4:38 PM Milestone MeLuDI v1.4.3 completed
Updates of the MeLuDI extension to BASE, a package of registration …
4:37 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.4.3 has been created.
4:34 PM PluginDownload edited by olle
Added information on MeLuDI 1.4.3 (diff)
4:31 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.4.3 (diff)
4:23 PM meludi-1.4.3.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.4.3
4:21 PM Changeset [3873] by olle
Tagging release 1.4.3
4:17 PM net.sf.basedb.meludi.notes1_4_3 created by olle
Added information on MeLuDI 1.4.3
4:10 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) updated by olle
(In [3872]) Refs #880. Updates due to version number change to …
4:10 PM Changeset [3872] by olle
Refs #880. Updates due to version number change to "1.4.3". 1. …
3:37 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) updated by olle
(In [3871]) Refs #880. MeLuDI updated in library preparation wizards …
3:37 PM Changeset [3871] by olle
Refs #880. MeLuDI updated in library preparation wizards to use BASE …
3:23 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) updated by olle
(In [3870]) Refs #880. File selection dialogs for data in tabular …
3:23 PM Changeset [3870] by olle
Refs #880. File selection dialogs for data in tabular format now open …
2:08 PM Milestone Reggie v4.3.1 completed
Bug fixes for Reggie 4.3. Revision Log: …
2:07 PM Changeset [3869] by Nicklas Nordborg
Merge patch release Reggie 4.3.1 to the trunk.
1:43 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) updated by olle
(In [3868]) Refs #880. Updates due to version number change to …
1:43 PM Changeset [3868] by olle
Refs #880. Updates due to version number change to "1.4.3-dev". 1. …
1:40 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
1:37 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.
1:37 PM Ticket #880 (MeLuDI v.1.4.2 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.4.2.
10:10 AM Ticket #525 (Import data from INCA) updated by olle
(In [3867]) Refs #525. INCA import updated in report file management. …
10:10 AM Changeset [3867] by olle
Refs #525. INCA import updated in report file management. The report …
10:02 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.3.1 (diff)
10:01 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.3.1 (diff)
10:00 AM reggie-4.3.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.3.1
9:59 AM Changeset [3866] by Nicklas Nordborg
Tagging Reggie 4.3.1
9:58 AM Changeset [3865] by Nicklas Nordborg
Preparing to release Reggie 4.3.1
9:54 AM Ticket #525 (Import data from INCA) updated by Nicklas Nordborg
(In [3864]) References #525: Import data from INCA Remove unused …
9:54 AM Changeset [3864] by Nicklas Nordborg
References #525: Import data from INCA Remove unused code. This …
9:53 AM Ticket #878 (The YellowLabel wizard display Library *.dil items instead of Library items) closed by Nicklas Nordborg
fixed: (In [3863]) Fixes #878: The YellowLabel wizard display Library *.dil …
9:53 AM Changeset [3863] by Nicklas Nordborg
Fixes #878: The YellowLabel wizard display Library *.dil items instead …
9:51 AM Ticket #878 (The YellowLabel wizard display Library *.dil items instead of Library items) updated by Nicklas Nordborg
Milestone changed
9:16 AM Changeset [3862] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.3
8:31 AM Ticket #879 (Switch to BASE 3.8) updated by Nicklas Nordborg
(In [3861]) References #879: Switch to BASE 3.8 Removing calls to …
8:31 AM Changeset [3861] by Nicklas Nordborg
References #879: Switch to BASE 3.8 Removing calls to deprecated …
8:26 AM Ticket #872 (Register Reggie as a start page) closed by Nicklas Nordborg
fixed: (In [3860]) Fixes #872: Register Reggie as a start page
8:26 AM Changeset [3860] by Nicklas Nordborg
Fixes #872: Register Reggie as a start page
8:17 AM Ticket #879 (Switch to BASE 3.8) closed by Nicklas Nordborg
fixed: (In [3859]) Fixes #879: Switch to BASE 3.8
8:17 AM Changeset [3859] by Nicklas Nordborg
Fixes #879: Switch to BASE 3.8
8:16 AM Ticket #879 (Switch to BASE 3.8) updated by Nicklas Nordborg
Description changed
8:15 AM Ticket #879 (Switch to BASE 3.8) updated by Nicklas Nordborg
Status changed
8:15 AM Tickets #525,​872 batch updated by Nicklas Nordborg
Milestone changed
8:12 AM Ticket #879 (Switch to BASE 3.8) created by Nicklas Nordborg
The INCA importer (#525) already requires BASE 3.8 and some changes …

Apr 21, 2016:

4:15 PM Ticket #525 (Import data from INCA) updated by olle
(In [3858]) Refs #525. Inca import updated in the commit step to use …
4:15 PM Changeset [3858] by olle
Refs #525. Inca import updated in the commit step to use the …
2:30 PM Ticket #525 (Import data from INCA) updated by olle
Design update: * Inca import should be updated in the commit step to …

Apr 18, 2016:

3:02 PM Ticket #878 (The YellowLabel wizard display Library *.dil items instead of Library items) created by Nicklas Nordborg
If there is a *.dil item for a Library it is displayed instead of the …
11:22 AM Ticket #525 (Import data from INCA) updated by olle
(In [3857]) Refs #525. Bug fix: INCA import updated in javascript, to …
11:22 AM Changeset [3857] by olle
Refs #525. Bug fix: INCA import updated in javascript, to make it …
10:01 AM Ticket #525 (Import data from INCA) updated by olle
(In [3856]) Refs #525. INCA import updated: a. A report file …
10:01 AM Changeset [3856] by olle
Refs #525. INCA import updated: a. A report file download button …
9:48 AM Ticket #525 (Import data from INCA) updated by olle
Functional specification update: * INCA import should display a …

Apr 15, 2016:

11:02 AM Ticket #525 (Import data from INCA) updated by olle
(In [3855]) Refs #525. Bug fixed in INCA import with multiple commits, …
11:02 AM Changeset [3855] by olle
Refs #525. Bug fixed in INCA import with multiple commits, to make it …
9:29 AM Ticket #525 (Import data from INCA) updated by olle
Bug found: * Current implementation of INCA import with multiple …

Apr 14, 2016:

1:57 PM Ticket #525 (Import data from INCA) updated by olle
Info: * BASE ticket #2000
10:10 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Link to update notes for Reggie 4.3 (diff)
10:06 AM Ticket #525 (Import data from INCA) updated by olle
(In [3854]) Refs #525. INCA import updated in order to try to …
10:06 AM Changeset [3854] by olle
Refs #525. INCA import updated in order to try to stabilize the …
10:02 AM Ticket #525 (Import data from INCA) updated by olle
Design discussion: * Tests have shown that imports with a large …
9:22 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
Added Reggie 4.3 screenshot (diff)
9:22 AM reggie-4.3.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.3
9:09 AM Changeset [3853] by Nicklas Nordborg
Preparing for future release Reggie 4.4
9:08 AM Milestone Reggie v4.3 completed
See Reggie extension page for more information.
9:07 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.3 (diff)
9:07 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.3 (diff)
9:05 AM reggie-4.3.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.3
9:04 AM Changeset [3852] by Nicklas Nordborg
Tagging Reggie 4.3
9:03 AM Changeset [3851] by Nicklas Nordborg
Preparing to release Reggie 4.3
9:02 AM Changeset [3850] by Nicklas Nordborg
Preparing for future release External files support 1.3
9:01 AM Milestone External files support 1.2 completed
An extension package containing support for additional protocols to …
9:00 AM PluginDownload edited by Nicklas Nordborg
Released Xfiles 1.2 (diff)
9:00 AM net.sf.basedb.xfiles edited by Nicklas Nordborg
Released Xfiles 1.2 (diff)
8:58 AM xfiles-1.2.tar.gz attached to net.sf.basedb.xfiles by Nicklas Nordborg
XFiles 1.2
8:57 AM Changeset [3849] by Nicklas Nordborg
Tagging External files support 1.2
8:56 AM Changeset [3848] by Nicklas Nordborg
Preparing to release External files support 1.2
8:46 AM Tickets #865,​875,​876 batch updated by Nicklas Nordborg
fixed
8:25 AM Ticket #877 (Add counter for consent forms) closed by Nicklas Nordborg
fixed: (In [3847]) Fixes #877: Add counter for consent forms
8:25 AM Changeset [3847] by Nicklas Nordborg
Fixes #877: Add counter for consent forms
8:24 AM Ticket #877 (Add counter for consent forms) created by Nicklas Nordborg
It should count all cases and blood items that is missing a consent …
8:15 AM Ticket #525 (Import data from INCA) updated by Nicklas Nordborg
(In [3846]) References #525: Import data from INCA Marked the "Inca …
8:15 AM Changeset [3846] by Nicklas Nordborg
References #525: Import data from INCA Marked the "Inca import" as an …
8:04 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by Nicklas Nordborg
(In [3845]) References #864: Implement a service that check and update …
8:04 AM Changeset [3845] by Nicklas Nordborg
References #864: Implement a service that check and update file …
7:58 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
(In [3844]) References #865: Stray files wizard Added a counter for …
7:58 AM Changeset [3844] by Nicklas Nordborg
References #865: Stray files wizard Added a counter for the stray …

Apr 13, 2016:

2:28 PM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
(In [3843]) References #865: Stray files wizard Implemented support …
2:28 PM Changeset [3843] by Nicklas Nordborg
References #865: Stray files wizard Implemented support for deleting …
1:23 PM Ticket #525 (Import data from INCA) updated by olle
(In [3842]) Refs #525. INCA import updated to disable step-1 input …
1:23 PM Changeset [3842] by olle
Refs #525. INCA import updated to disable step-1 input fields under …
12:23 PM Ticket #525 (Import data from INCA) updated by olle
Updated recommended procedure for creating a tab-separated *.csv file …
12:11 PM Ticket #525 (Import data from INCA) updated by olle
(In [3841]) Refs #525. INCA import updated by removing debug output of …
12:11 PM Changeset [3841] by olle
Refs #525. INCA import updated by removing debug output of lines …
12:05 PM Ticket #525 (Import data from INCA) updated by olle
(In [3840]) Refs #525. INCA import updated to allow the program to …
12:05 PM Changeset [3840] by olle
Refs #525. INCA import updated to allow the program to handle internal …
12:01 PM Ticket #525 (Import data from INCA) updated by olle
Functional specification update: * It is desirable that the steps …
9:03 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
(In [3839]) References #865: Stray files wizard Added 'owner' to the …
9:03 AM Changeset [3839] by Nicklas Nordborg
References #865: Stray files wizard Added 'owner' to the list. Added …
8:33 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
(In [3838]) References #865: Stray files wizard Added support for …
8:33 AM Changeset [3838] by Nicklas Nordborg
References #865: Stray files wizard Added support for filtering the …

Apr 12, 2016:

10:01 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
(In [3837]) References #865: Stray files wizard Started to implement …
10:01 AM Changeset [3837] by Nicklas Nordborg
References #865: Stray files wizard Started to implement the stray …
9:35 AM Tickets #771,​861 batch updated by Nicklas Nordborg
fixed
9:34 AM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
Milestone changed
9:28 AM Ticket #525 (Import data from INCA) updated by olle
(In [3836]) Refs #525. INCA import re-written to collect INCA data for …
9:28 AM Changeset [3836] by olle
Refs #525. INCA import re-written to collect INCA data for each case …
9:03 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
Description changed
7:35 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
Status, Milestone changed

Apr 11, 2016:

11:26 AM Ticket #876 (NeoPrep library registration without Caliper files) updated by Nicklas Nordborg
(In [3835]) References #876: NeoPrep library registration without …
11:26 AM Changeset [3835] by Nicklas Nordborg
References #876: NeoPrep library registration without Caliper files …
8:52 AM Ticket #525 (Import data from INCA) updated by olle
Design discussion: a. The procedure for speeding up the mapping step …
8:26 AM Ticket #876 (NeoPrep library registration without Caliper files) updated by Nicklas Nordborg
(In [3834]) References #876: NeoPrep library registration without …
8:26 AM Changeset [3834] by Nicklas Nordborg
References #876: NeoPrep library registration without Caliper files …

Apr 8, 2016:

9:57 AM Ticket #876 (NeoPrep library registration without Caliper files) updated by Nicklas Nordborg
Status changed
9:56 AM Tickets #863,​864,​867 batch updated by Nicklas Nordborg
fixed
9:31 AM net.sf.basedb.reggie/notes43 created by Nicklas Nordborg
Upgrade comments about #875
9:22 AM Ticket #875 (Soft and hard target amount for NeoPrep) updated by Nicklas Nordborg
(In [3833]) References #875: Soft and hard target amount for NeoPrep
9:22 AM Changeset [3833] by Nicklas Nordborg
References #875: Soft and hard target amount for NeoPrep Added …

Apr 7, 2016:

3:41 PM Ticket #875 (Soft and hard target amount for NeoPrep) updated by Nicklas Nordborg
(In [3832]) References #875: Soft and hard target amount for NeoPrep
3:41 PM Changeset [3832] by Nicklas Nordborg
References #875: Soft and hard target amount for NeoPrep The "Library …

Apr 6, 2016:

12:59 PM Ticket #875 (Soft and hard target amount for NeoPrep) updated by Nicklas Nordborg
(In [3831]) References #875: Soft and hard target amount for NeoPrep
12:59 PM Changeset [3831] by Nicklas Nordborg
References #875: Soft and hard target amount for NeoPrep The "RNA …
8:56 AM Ticket #525 (Import data from INCA) updated by olle
(In [3830]) Refs #525. Attempt to speed up file check/case mapping …
8:56 AM Changeset [3830] by olle
Refs #525. Attempt to speed up file check/case mapping stage for extra …
8:51 AM Ticket #525 (Import data from INCA) updated by olle
Design discussion: When INCA data is supplied in multiple files, the …
7:59 AM Ticket #875 (Soft and hard target amount for NeoPrep) updated by Nicklas Nordborg
(In [3829]) References #875: Soft and hard target amount for NeoPrep
7:59 AM Changeset [3829] by Nicklas Nordborg
References #875: Soft and hard target amount for NeoPrep Added …
7:54 AM Ticket #875 (Soft and hard target amount for NeoPrep) updated by Nicklas Nordborg
Status changed

Apr 5, 2016:

3:36 PM Ticket #876 (NeoPrep library registration without Caliper files) created by Nicklas Nordborg
The sizes of fragments seems to be stable. It is not necessary to run …
2:49 PM Ticket #875 (Soft and hard target amount for NeoPrep) updated by Nicklas Nordborg
Description changed
2:47 PM Ticket #875 (Soft and hard target amount for NeoPrep) created by Nicklas Nordborg
The NeoPrep has a rather wide working range (25-100 ng) of input RNA. …
1:55 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3828]) References #861: YellowLabel tracking wizard Display 'In …
1:55 PM Changeset [3828] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Display 'In progress' …
10:00 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3827]) References #861: YellowLabel tracking wizard Added …
10:00 AM Changeset [3827] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added RQS/RIN column.
9:29 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3826]) References #861: YellowLabel tracking wizard Added …
9:29 AM Changeset [3826] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added Consent date
8:12 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3825]) References #861: YellowLabel tracking wizard Added …
8:12 AM Changeset [3825] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added `Re-create report …

Apr 4, 2016:

1:53 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3824]) References #861: YellowLabel tracking wizard Added dialog …
1:53 PM Changeset [3824] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added dialog for setting …
12:42 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3823]) References #861: YellowLabel tracking wizard Include the …
12:42 PM Changeset [3823] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Include the site name in …
11:16 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3822]) References #861: YellowLabel tracking wizard Added flag …
11:16 AM Changeset [3822] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added flag icon to RNA …
9:26 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3821]) References #861: YellowLabel tracking wizard Added …
9:26 AM Changeset [3821] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added Completed date
8:34 AM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) closed by Nicklas Nordborg
fixed: (In [3820]) Fixes #874: <reference-gidx> is incorrect in the default …
8:34 AM Changeset [3820] by Nicklas Nordborg
Fixes #874: <reference-gidx> is incorrect in the default …
8:32 AM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) updated by Nicklas Nordborg
Description changed
8:27 AM Ticket #525 (Import data from INCA) updated by olle
(In [3819]) Refs #525. First (experimental) attempt at implementing …
8:27 AM Changeset [3819] by olle
Refs #525. First (experimental) attempt at implementing support for an …

Apr 1, 2016:

2:43 PM Ticket #525 (Import data from INCA) updated by olle
(In [3818]) Refs #525. INCA import refactored, in order to put code …
2:43 PM Changeset [3818] by olle
Refs #525. INCA import refactored, in order to put code sections in …
9:58 AM Ticket #525 (Import data from INCA) updated by olle
(In [3817]) Refs #525. INCA import hopefully made more stable, by …
9:58 AM Changeset [3817] by olle
Refs #525. INCA import hopefully made more stable, by reading data for …
9:46 AM Ticket #525 (Import data from INCA) updated by olle
Tests of initial version of INCA import: Test setup: * Tests were …

Mar 29, 2016:

2:29 PM Ticket #525 (Import data from INCA) updated by olle
(In [3816]) Refs #525. Java servlet class IncaServlet refactored to …
2:29 PM Changeset [3816] by olle
Refs #525. Java servlet class IncaServlet refactored to make code …

Mar 23, 2016:

2:56 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3815]) References #861: YellowLabel tracking wizard Load sites …
2:56 PM Changeset [3815] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Load sites and …
2:36 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3814]) References #861: YellowLabel tracking wizard When …
2:36 PM Changeset [3814] by Nicklas Nordborg
References #861: YellowLabel tracking wizard When filtering on the …
9:08 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3813]) References #861: YellowLabel tracking wizard The …
9:08 AM Changeset [3813] by Nicklas Nordborg
References #861: YellowLabel tracking wizard The "PilotReportExists" …
9:05 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3812]) References #861: YellowLabel tracking wizard Added column …
9:05 AM Changeset [3812] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added column for …
8:53 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3811]) References #861: YellowLabel tracking wizard Added linked …
8:53 AM Changeset [3811] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added linked icons to …
8:05 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3810]) References #861: YellowLabel tracking wizard The "Pilot …
8:05 AM Changeset [3810] by Nicklas Nordborg
References #861: YellowLabel tracking wizard The "Pilot report" …
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