Timeline
Apr 14, 2016:
- 1:57 PM Ticket #525 (Import data from INCA) updated by
- Info: * BASE ticket #2000 …
- 10:10 AM net.sf.basedb.reggie edited by
- Link to update notes for Reggie 4.3 (diff)
- 10:06 AM Ticket #525 (Import data from INCA) updated by
- (In [3854]) Refs #525. INCA import updated in order to try to …
- 10:06 AM Changeset [3854] by
- Refs #525. INCA import updated in order to try to stabilize the …
- 10:02 AM Ticket #525 (Import data from INCA) updated by
- Design discussion: * Tests have shown that imports with a large …
- 9:22 AM net.sf.basedb.reggie/HistoryOfReggie edited by
- Added Reggie 4.3 screenshot (diff)
- 9:09 AM Changeset [3853] by
- Preparing for future release Reggie 4.4
- 9:08 AM Milestone Reggie v4.3 completed
- See Reggie extension page for more information.
- 9:07 AM PluginDownload edited by
- Released Reggie 4.3 (diff)
- 9:07 AM net.sf.basedb.reggie edited by
- Released Reggie 4.3 (diff)
- 9:04 AM Changeset [3852] by
- Tagging Reggie 4.3
- 9:03 AM Changeset [3851] by
- Preparing to release Reggie 4.3
- 9:02 AM Changeset [3850] by
- Preparing for future release External files support 1.3
- 9:01 AM Milestone External files support 1.2 completed
- An extension package containing support for additional protocols to …
- 9:00 AM PluginDownload edited by
- Released Xfiles 1.2 (diff)
- 9:00 AM net.sf.basedb.xfiles edited by
- Released Xfiles 1.2 (diff)
- 8:57 AM Changeset [3849] by
- Tagging External files support 1.2
- 8:56 AM Changeset [3848] by
- Preparing to release External files support 1.2
- 8:46 AM Tickets #865,875,876 batch updated by
- fixed
- 8:25 AM Ticket #877 (Add counter for consent forms) closed by
- fixed: (In [3847]) Fixes #877: Add counter for consent forms
- 8:25 AM Changeset [3847] by
- Fixes #877: Add counter for consent forms
- 8:24 AM Ticket #877 (Add counter for consent forms) created by
- It should count all cases and blood items that is missing a consent …
- 8:15 AM Ticket #525 (Import data from INCA) updated by
- (In [3846]) References #525: Import data from INCA Marked the "Inca …
- 8:15 AM Changeset [3846] by
- References #525: Import data from INCA Marked the "Inca import" as an …
- 8:04 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
- (In [3845]) References #864: Implement a service that check and update …
- 8:04 AM Changeset [3845] by
- References #864: Implement a service that check and update file …
- 7:58 AM Ticket #865 (Stray files wizard) updated by
- (In [3844]) References #865: Stray files wizard Added a counter for …
- 7:58 AM Changeset [3844] by
- References #865: Stray files wizard Added a counter for the stray …
Apr 13, 2016:
- 2:28 PM Ticket #865 (Stray files wizard) updated by
- (In [3843]) References #865: Stray files wizard Implemented support …
- 2:28 PM Changeset [3843] by
- References #865: Stray files wizard Implemented support for deleting …
- 1:23 PM Ticket #525 (Import data from INCA) updated by
- (In [3842]) Refs #525. INCA import updated to disable step-1 input …
- 1:23 PM Changeset [3842] by
- Refs #525. INCA import updated to disable step-1 input fields under …
- 12:23 PM Ticket #525 (Import data from INCA) updated by
- Updated recommended procedure for creating a tab-separated *.csv file …
- 12:11 PM Ticket #525 (Import data from INCA) updated by
- (In [3841]) Refs #525. INCA import updated by removing debug output of …
- 12:11 PM Changeset [3841] by
- Refs #525. INCA import updated by removing debug output of lines …
- 12:05 PM Ticket #525 (Import data from INCA) updated by
- (In [3840]) Refs #525. INCA import updated to allow the program to …
- 12:05 PM Changeset [3840] by
- Refs #525. INCA import updated to allow the program to handle internal …
- 12:01 PM Ticket #525 (Import data from INCA) updated by
- Functional specification update: * It is desirable that the steps …
- 9:03 AM Ticket #865 (Stray files wizard) updated by
- (In [3839]) References #865: Stray files wizard Added 'owner' to the …
- 9:03 AM Changeset [3839] by
- References #865: Stray files wizard Added 'owner' to the list. Added …
- 8:33 AM Ticket #865 (Stray files wizard) updated by
- (In [3838]) References #865: Stray files wizard Added support for …
- 8:33 AM Changeset [3838] by
- References #865: Stray files wizard Added support for filtering the …
Apr 12, 2016:
- 10:01 AM Ticket #865 (Stray files wizard) updated by
- (In [3837]) References #865: Stray files wizard Started to implement …
- 10:01 AM Changeset [3837] by
- References #865: Stray files wizard Started to implement the stray …
- 9:35 AM Tickets #771,861 batch updated by
- fixed
- 9:34 AM Ticket #771 (Yellow label highlighting a representative specimen) updated by
-
Milestone changed
- 9:28 AM Ticket #525 (Import data from INCA) updated by
- (In [3836]) Refs #525. INCA import re-written to collect INCA data for …
- 9:28 AM Changeset [3836] by
- Refs #525. INCA import re-written to collect INCA data for each case …
- 9:03 AM Ticket #865 (Stray files wizard) updated by
-
Description changed
- 7:35 AM Ticket #865 (Stray files wizard) updated by
-
Milestone, Status changed
Apr 11, 2016:
- 11:26 AM Ticket #876 (NeoPrep library registration without Caliper files) updated by
- (In [3835]) References #876: NeoPrep library registration without …
- 11:26 AM Changeset [3835] by
- References #876: NeoPrep library registration without Caliper files …
- 8:52 AM Ticket #525 (Import data from INCA) updated by
- Design discussion: a. The procedure for speeding up the mapping step …
- 8:26 AM Ticket #876 (NeoPrep library registration without Caliper files) updated by
- (In [3834]) References #876: NeoPrep library registration without …
- 8:26 AM Changeset [3834] by
- References #876: NeoPrep library registration without Caliper files …
Apr 8, 2016:
- 9:57 AM Ticket #876 (NeoPrep library registration without Caliper files) updated by
-
Status changed
- 9:56 AM Tickets #863,864,867 batch updated by
- fixed
- 9:31 AM net.sf.basedb.reggie/notes43 created by
- Upgrade comments about #875
- 9:22 AM Ticket #875 (Soft and hard target amount for NeoPrep) updated by
- (In [3833]) References #875: Soft and hard target amount for NeoPrep …
- 9:22 AM Changeset [3833] by
- References #875: Soft and hard target amount for NeoPrep Added …
Apr 7, 2016:
- 3:41 PM Ticket #875 (Soft and hard target amount for NeoPrep) updated by
- (In [3832]) References #875: Soft and hard target amount for NeoPrep …
- 3:41 PM Changeset [3832] by
- References #875: Soft and hard target amount for NeoPrep The "Library …
Apr 6, 2016:
- 12:59 PM Ticket #875 (Soft and hard target amount for NeoPrep) updated by
- (In [3831]) References #875: Soft and hard target amount for NeoPrep …
- 12:59 PM Changeset [3831] by
- References #875: Soft and hard target amount for NeoPrep The "RNA …
- 8:56 AM Ticket #525 (Import data from INCA) updated by
- (In [3830]) Refs #525. Attempt to speed up file check/case mapping …
- 8:56 AM Changeset [3830] by
- Refs #525. Attempt to speed up file check/case mapping stage for extra …
- 8:51 AM Ticket #525 (Import data from INCA) updated by
- Design discussion: When INCA data is supplied in multiple files, the …
- 7:59 AM Ticket #875 (Soft and hard target amount for NeoPrep) updated by
- (In [3829]) References #875: Soft and hard target amount for NeoPrep …
- 7:59 AM Changeset [3829] by
- References #875: Soft and hard target amount for NeoPrep Added …
- 7:54 AM Ticket #875 (Soft and hard target amount for NeoPrep) updated by
-
Status changed
Apr 5, 2016:
- 3:36 PM Ticket #876 (NeoPrep library registration without Caliper files) created by
- The sizes of fragments seems to be stable. It is not necessary to run …
- 2:49 PM Ticket #875 (Soft and hard target amount for NeoPrep) updated by
-
Description changed
- 2:47 PM Ticket #875 (Soft and hard target amount for NeoPrep) created by
- The NeoPrep has a rather wide working range (25-100 ng) of input RNA. …
- 1:55 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3828]) References #861: YellowLabel tracking wizard Display 'In …
- 1:55 PM Changeset [3828] by
- References #861: YellowLabel tracking wizard Display 'In progress' …
- 10:00 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3827]) References #861: YellowLabel tracking wizard Added …
- 10:00 AM Changeset [3827] by
-
References #861: YellowLabel tracking wizard
Added
RQS/RINcolumn. - 9:29 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3826]) References #861: YellowLabel tracking wizard Added …
- 9:29 AM Changeset [3826] by
-
References #861: YellowLabel tracking wizard
Added
Consent date… - 8:12 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3825]) References #861: YellowLabel tracking wizard Added …
- 8:12 AM Changeset [3825] by
- References #861: YellowLabel tracking wizard Added `Re-create report …
Apr 4, 2016:
- 1:53 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3824]) References #861: YellowLabel tracking wizard Added dialog …
- 1:53 PM Changeset [3824] by
- References #861: YellowLabel tracking wizard Added dialog for setting …
- 12:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3823]) References #861: YellowLabel tracking wizard Include the …
- 12:42 PM Changeset [3823] by
- References #861: YellowLabel tracking wizard Include the site name in …
- 11:16 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3822]) References #861: YellowLabel tracking wizard Added flag …
- 11:16 AM Changeset [3822] by
- References #861: YellowLabel tracking wizard Added flag icon to RNA …
- 9:26 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3821]) References #861: YellowLabel tracking wizard Added …
- 9:26 AM Changeset [3821] by
-
References #861: YellowLabel tracking wizard
Added
Completed date… - 8:34 AM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) closed by
- fixed: (In [3820]) Fixes #874: <reference-gidx> is incorrect in the default …
- 8:34 AM Changeset [3820] by
- Fixes #874: <reference-gidx> is incorrect in the default …
- 8:32 AM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) updated by
-
Description changed
- 8:27 AM Ticket #525 (Import data from INCA) updated by
- (In [3819]) Refs #525. First (experimental) attempt at implementing …
- 8:27 AM Changeset [3819] by
- Refs #525. First (experimental) attempt at implementing support for an …
Apr 1, 2016:
- 2:43 PM Ticket #525 (Import data from INCA) updated by
- (In [3818]) Refs #525. INCA import refactored, in order to put code …
- 2:43 PM Changeset [3818] by
- Refs #525. INCA import refactored, in order to put code sections in …
- 9:58 AM Ticket #525 (Import data from INCA) updated by
- (In [3817]) Refs #525. INCA import hopefully made more stable, by …
- 9:58 AM Changeset [3817] by
- Refs #525. INCA import hopefully made more stable, by reading data for …
- 9:46 AM Ticket #525 (Import data from INCA) updated by
- Tests of initial version of INCA import: Test setup: * Tests were …
Mar 29, 2016:
- 2:29 PM Ticket #525 (Import data from INCA) updated by
-
(In [3816]) Refs #525. Java servlet class
IncaServletrefactored to … - 2:29 PM Changeset [3816] by
-
Refs #525. Java servlet class
IncaServletrefactored to make code …
Mar 23, 2016:
- 2:56 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3815]) References #861: YellowLabel tracking wizard Load sites …
- 2:56 PM Changeset [3815] by
- References #861: YellowLabel tracking wizard Load sites and …
- 2:36 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3814]) References #861: YellowLabel tracking wizard When …
- 2:36 PM Changeset [3814] by
- References #861: YellowLabel tracking wizard When filtering on the …
- 9:08 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3813]) References #861: YellowLabel tracking wizard The …
- 9:08 AM Changeset [3813] by
- References #861: YellowLabel tracking wizard The "PilotReportExists" …
- 9:05 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3812]) References #861: YellowLabel tracking wizard Added column …
- 9:05 AM Changeset [3812] by
- References #861: YellowLabel tracking wizard Added column for …
- 8:53 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3811]) References #861: YellowLabel tracking wizard Added linked …
- 8:53 AM Changeset [3811] by
- References #861: YellowLabel tracking wizard Added linked icons to …
- 8:05 AM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3810]) References #861: YellowLabel tracking wizard The "Pilot …
- 8:05 AM Changeset [3810] by
- References #861: YellowLabel tracking wizard The "Pilot report" …
Mar 22, 2016:
- 4:03 PM Ticket #525 (Import data from INCA) updated by
-
Note on INCA annotations:
* INCA file columns "
A030PrepNr" and … - 3:27 PM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) created by
-
This should be changed to:
hg38/hg38.analysisSet/hg38.analysisSet.fa - 2:33 PM Changeset [3809] by
- Merge Reggie 4.2.1 to the trunk.
- 2:29 PM Milestone Reggie v4.2.1 completed
- Bug fixes for Reggie 4.2. Revision Log: …
- 2:29 PM PluginDownload edited by
- Released Reggie 4.2.1 (diff)
- 2:28 PM net.sf.basedb.reggie edited by
- Released Reggie 4.2.1 (diff)
- 2:25 PM Changeset [3808] by
- Tagging Reggie 4.2.1
- 2:25 PM Changeset [3807] by
- Preparing to release Reggie 4.2.1
- 2:19 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) closed by
- fixed
- 2:11 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) updated by
- (In [3806]) References #873: Target volume for NeoPrep should be …
- 2:11 PM Changeset [3806] by
- References #873: Target volume for NeoPrep should be changed from 12.5 …
- 2:02 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) updated by
-
Description changed
- 1:58 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) updated by
- (In [3805]) References #873: Target volume for NeoPrep should be …
- 1:58 PM Changeset [3805] by
- References #873: Target volume for NeoPrep should be changed from 12.5 …
- 1:28 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) created by
- See also #858. Turned out that 12.5µl was not practical since it was …
- 9:55 AM Ticket #634 (Retraction wizard) updated by
-
Milestone changed
- 9:55 AM Ticket #866 (Implement the "Start page" extension) updated by
-
Milestone changed
- 9:55 AM Ticket #866 (Implement the "Start page" extension) closed by
- duplicate: Duplicated by #872.
- 8:51 AM Ticket #868 (Update SSH library) updated by
- (In [3804]) References #868: Update SSH library Use a singleton …
- 8:51 AM Changeset [3804] by
-
References #868: Update SSH library
Use a singleton
Configinstance … - 8:37 AM Ticket #867 (Update SSH library) updated by
- (In [3803]) References #867: Update SSH library Use a singleton …
- 8:37 AM Changeset [3803] by
-
References #867: Update SSH library
Use a singleton
Configinstance …
Mar 21, 2016:
- 2:52 PM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
- (In [3802]) References #864: Implement a service that check and update …
- 2:52 PM Changeset [3802] by
- References #864: Implement a service that check and update file …
- 12:11 PM Ticket #525 (Import data from INCA) updated by
-
(In [3801]) Refs #525. Java servlet class
IncaServletrefactored to … - 12:11 PM Changeset [3801] by
-
Refs #525. Java servlet class
IncaServletrefactored to make code …
Mar 18, 2016:
- 3:04 PM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
-
Status, Milestone changed
- 2:27 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3800]) References #861: YellowLabel tracking wizard Gray …
- 2:27 PM Changeset [3800] by
- References #861: YellowLabel tracking wizard Gray background for …
- 1:16 PM Ticket #872 (Register Reggie as a start page) created by
- BASE 3.8 provides a new extension point for setting the start page …
- 1:13 PM Ticket #867 (Update SSH library) updated by
-
Status changed
- 1:08 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) closed by
- fixed: (In [3799]) Fixes #871: NullPointerException when selecting a software …
- 1:08 PM Changeset [3799] by
- Fixes #871: NullPointerException when selecting a software item in the …
- 1:07 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) updated by
-
Status, Owner, Component changed
- 1:05 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) created by
- When running the Gene and Pilot report wizard it is possible to select …
- 12:05 PM Tickets #869,870 batch updated by
- (In [3798]) References #870 and #869. Updated README.
- 12:05 PM Changeset [3798] by
- References #870 and #869. Updated README.
- 12:04 PM Ticket #869 (Switch to Java 8) closed by
- fixed
- 12:03 PM Ticket #870 (Switch to BASE 3.7) closed by
- fixed: (In [3797]) Fixes #870: Switch to BASE 3.7 Noted that the FTP …
- 12:03 PM Changeset [3797] by
- Fixes #870: Switch to BASE 3.7 Noted that the FTP connection manager …
- 11:44 AM Ticket #870 (Switch to BASE 3.7) created by
- The usual procedure is to always require the current BASE version.
- 11:43 AM Ticket #869 (Switch to Java 8) updated by
- (In [3795]) Fixes #869: Switch to Java 8
- 11:42 AM Ticket #868 (Update SSH library) closed by
- fixed: (In [3796]) Fixes #868: Update SSH library
- 11:42 AM Changeset [3796] by
- Fixes #868: Update SSH library
- 11:40 AM Ticket #844 (Switch to Java 8) updated by
- Should be #869. (In [3795]) Fixes #844: Switch to Java 8
- 11:40 AM Changeset [3795] by
- Fixes #844: Switch to Java 8
- 11:30 AM Ticket #869 (Switch to Java 8) created by
- Java 8 is recommended since BASE 3.6. See for example #783.
- 11:24 AM Ticket #868 (Update SSH library) created by
- See #867.
- 11:24 AM Ticket #867 (Update SSH library) updated by
- (In [3794]) References #867: Update SSH library Changed to SSHJ …
- 11:24 AM Changeset [3794] by
- References #867: Update SSH library Changed to SSHJ 0.15.0. New …
- 11:15 AM Ticket #867 (Update SSH library) created by
- The SSH library we use for making SSH connections to other hosts seems …
- 10:49 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
- (In [3793]) References #863: Secondary analysis scripts should set …
- 10:49 AM Changeset [3793] by
- References #863: Secondary analysis scripts should set permissions on …
- 9:07 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
- (In [3792]) References #863: Secondary analysis scripts should set …
- 9:07 AM Changeset [3792] by
- References #863: Secondary analysis scripts should set permissions on …
Mar 17, 2016:
- 2:49 PM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
-
Status, Milestone changed
- 2:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3791]) References #861: YellowLabel tracking wizard The "Create …
- 2:42 PM Changeset [3791] by
- References #861: YellowLabel tracking wizard The "Create Pilot report …
- 1:47 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3790]) References #861: YellowLabel tracking wizard Moved yellow …
- 1:47 PM Changeset [3790] by
- References #861: YellowLabel tracking wizard Moved yellow label files …
- 1:37 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3789]) References #861: YellowLabel tracking wizard Added …
- 1:37 PM Changeset [3789] by
- References #861: YellowLabel tracking wizard Added "Create Pilot …
- 1:34 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3788]) References #861: YellowLabel tracking wizard Moved code …
- 1:34 PM Changeset [3788] by
- References #861: YellowLabel tracking wizard Moved code from the …
- 12:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3787]) References #861: YellowLabel tracking wizard Added "Mark …
- 12:42 PM Changeset [3787] by
- References #861: YellowLabel tracking wizard Added "Mark as …
- 11:08 AM Ticket #525 (Import data from INCA) updated by
- (In [3786]) Refs #525. First version of the INCA data import. It is …
- 11:08 AM Changeset [3786] by
- Refs #525. First version of the INCA data import. It is based on the …
Mar 16, 2016:
- 4:55 PM Ticket #525 (Import data from INCA) updated by
- Functional specification update: * First version of the INCA data …
- 3:42 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3785]) References #861: YellowLabel tracking wizard Fixes …
- 3:42 PM Changeset [3785] by
- References #861: YellowLabel tracking wizard Fixes filtering problems …
- 3:33 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3784]) References #861: YellowLabel tracking wizard Added …
- 3:33 PM Changeset [3784] by
-
References #861: YellowLabel tracking wizard
Added
CompletedDate… - 1:20 PM Ticket #861 (YellowLabel tracking wizard) updated by
- (In [3783]) References #861: YellowLabel tracking wizard Adding …
- 1:20 PM Changeset [3783] by
- References #861: YellowLabel tracking wizard Adding counter for …
- 12:54 PM Ticket #866 (Implement the "Start page" extension) created by
- Reggie should add itself as a "Start page". See …
- 11:01 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by
- Executing the following command […] will output a list with file …
- 9:43 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
-
Description changed
- 8:15 AM Ticket #865 (Stray files wizard) updated by
-
Description changed
- 8:14 AM Ticket #865 (Stray files wizard) created by
- The files in the project archive may not reflect what is registered in …
- 8:02 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by
-
Description changed
- 8:02 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) created by
- This is related to #863. The secondary analysis scripts will not give …
- 7:56 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) created by
- This is related to #864. Files generated on the project archive file …
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