Timeline
Apr 12, 2016:
- 10:01 AM Changeset [3837] by
- References #865: Stray files wizard Started to implement the stray …
- 9:35 AM Tickets #771,861 batch updated by
- fixed
- 9:28 AM Changeset [3836] by
- Refs #525. INCA import re-written to collect INCA data for each case …
Apr 11, 2016:
- 11:26 AM Changeset [3835] by
- References #876: NeoPrep? library registration without Caliper files …
- 8:26 AM Changeset [3834] by
- References #876: NeoPrep? library registration without Caliper files …
Apr 8, 2016:
- 9:56 AM Tickets #863,864,867 batch updated by
- fixed
- 9:31 AM net.sf.basedb.reggie/notes43 created by
- Upgrade comments about #875
- 9:22 AM Changeset [3833] by
- References #875: Soft and hard target amount for NeoPrep? Added …
Apr 7, 2016:
- 3:41 PM Changeset [3832] by
- References #875: Soft and hard target amount for NeoPrep? The "Library …
Apr 6, 2016:
- 12:59 PM Changeset [3831] by
- References #875: Soft and hard target amount for NeoPrep? The "RNA …
- 8:56 AM Changeset [3830] by
- Refs #525. Attempt to speed up file check/case mapping stage for extra …
- 7:59 AM Changeset [3829] by
- References #875: Soft and hard target amount for NeoPrep? Added …
Apr 5, 2016:
- 3:36 PM Ticket #876 (NeoPrep library registration without Caliper files) created by
- The sizes of fragments seems to be stable. It is not necessary to run …
- 2:47 PM Ticket #875 (Soft and hard target amount for NeoPrep) created by
- The NeoPrep has a rather wide working range (25-100 ng) of input RNA. …
- 1:55 PM Changeset [3828] by
- References #861: YellowLabel? tracking wizard Display 'In progress' …
- 10:00 AM Changeset [3827] by
-
References #861: YellowLabel? tracking wizard
Added
RQS/RINcolumn. - 9:29 AM Changeset [3826] by
-
References #861: YellowLabel? tracking wizard
Added
Consent date… - 8:12 AM Changeset [3825] by
- References #861: YellowLabel? tracking wizard Added `Re-create report …
Apr 4, 2016:
- 1:53 PM Changeset [3824] by
- References #861: YellowLabel? tracking wizard Added dialog for setting …
- 12:42 PM Changeset [3823] by
- References #861: YellowLabel? tracking wizard Include the site name in …
- 11:16 AM Changeset [3822] by
- References #861: YellowLabel? tracking wizard Added flag icon to RNA …
- 9:26 AM Changeset [3821] by
-
References #861: YellowLabel? tracking wizard
Added
Completed date… - 8:34 AM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) closed by
- fixed: (In [3820]) Fixes #874: <reference-gidx> is incorrect in the default …
- 8:34 AM Changeset [3820] by
- Fixes #874: <reference-gidx> is incorrect in the default …
- 8:27 AM Changeset [3819] by
- Refs #525. First (experimental) attempt at implementing support for an …
Apr 1, 2016:
- 2:43 PM Changeset [3818] by
- Refs #525. INCA import refactored, in order to put code sections in …
- 9:58 AM Changeset [3817] by
- Refs #525. INCA import hopefully made more stable, by reading data for …
Mar 29, 2016:
- 2:29 PM Changeset [3816] by
-
Refs #525. Java servlet class
IncaServletrefactored to make code …
Mar 23, 2016:
- 2:56 PM Changeset [3815] by
- References #861: YellowLabel? tracking wizard Load sites and …
- 2:36 PM Changeset [3814] by
- References #861: YellowLabel? tracking wizard When filtering on the …
- 9:08 AM Changeset [3813] by
- References #861: YellowLabel? tracking wizard The "PilotReportExists?" …
- 9:05 AM Changeset [3812] by
- References #861: YellowLabel? tracking wizard Added column for …
- 8:53 AM Changeset [3811] by
- References #861: YellowLabel? tracking wizard Added linked icons to …
- 8:05 AM Changeset [3810] by
- References #861: YellowLabel? tracking wizard The "Pilot report" …
Mar 22, 2016:
- 3:27 PM Ticket #874 (<reference-gidx> is incorrect in the default reggie-config.xml file) created by
-
This should be changed to:
hg38/hg38.analysisSet/hg38.analysisSet.fa - 2:33 PM Changeset [3809] by
- Merge Reggie 4.2.1 to the trunk.
- 2:29 PM Milestone Reggie v4.2.1 completed
- Bug fixes for Reggie 4.2. Revision Log: …
- 2:29 PM PluginDownload edited by
- Released Reggie 4.2.1 (diff)
- 2:28 PM net.sf.basedb.reggie edited by
- Released Reggie 4.2.1 (diff)
- 2:25 PM Changeset [3808] by
- Tagging Reggie 4.2.1
- 2:25 PM Changeset [3807] by
- Preparing to release Reggie 4.2.1
- 2:19 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) closed by
- fixed
- 2:11 PM Changeset [3806] by
- References #873: Target volume for NeoPrep? should be changed from 12.5 …
- 1:58 PM Changeset [3805] by
- References #873: Target volume for NeoPrep? should be changed from 12.5 …
- 1:28 PM Ticket #873 (Target volume for NeoPrep should be changed from 12.5 to 15) created by
- See also #858. Turned out that 12.5µl was not practical since it was …
- 9:55 AM Ticket #866 (Implement the "Start page" extension) closed by
- duplicate: Duplicated by #872.
- 8:51 AM Changeset [3804] by
-
References #868: Update SSH library
Use a singleton
Configinstance … - 8:37 AM Changeset [3803] by
-
References #867: Update SSH library
Use a singleton
Configinstance …
Mar 21, 2016:
- 2:52 PM Changeset [3802] by
- References #864: Implement a service that check and update file …
- 12:11 PM Changeset [3801] by
-
Refs #525. Java servlet class
IncaServletrefactored to make code …
Mar 18, 2016:
- 2:27 PM Changeset [3800] by
- References #861: YellowLabel? tracking wizard Gray background for …
- 1:16 PM Ticket #872 (Register Reggie as a start page) created by
- BASE 3.8 provides a new extension point for setting the start page …
- 1:08 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) closed by
- fixed: (In [3799]) Fixes #871: NullPointerException? when selecting a software …
- 1:08 PM Changeset [3799] by
- Fixes #871: NullPointerException? when selecting a software item in the …
- 1:05 PM Ticket #871 (NullPointerException when selecting a software item in the gene/pilot ...) created by
- When running the Gene and Pilot report wizard it is possible to select …
- 12:05 PM Changeset [3798] by
- References #870 and #869. Updated README.
- 12:04 PM Ticket #869 (Switch to Java 8) closed by
- fixed
- 12:03 PM Ticket #870 (Switch to BASE 3.7) closed by
- fixed: (In [3797]) Fixes #870: Switch to BASE 3.7 Noted that the FTP …
- 12:03 PM Changeset [3797] by
- Fixes #870: Switch to BASE 3.7 Noted that the FTP connection manager …
- 11:44 AM Ticket #870 (Switch to BASE 3.7) created by
- The usual procedure is to always require the current BASE version.
- 11:42 AM Ticket #868 (Update SSH library) closed by
- fixed: (In [3796]) Fixes #868: Update SSH library
- 11:42 AM Changeset [3796] by
- Fixes #868: Update SSH library
- 11:40 AM Changeset [3795] by
- Fixes #844: Switch to Java 8
- 11:30 AM Ticket #869 (Switch to Java 8) created by
- Java 8 is recommended since BASE 3.6. See for example #783.
- 11:24 AM Ticket #868 (Update SSH library) created by
- See #867.
- 11:24 AM Changeset [3794] by
- References #867: Update SSH library Changed to SSHJ 0.15.0. New …
- 11:15 AM Ticket #867 (Update SSH library) created by
- The SSH library we use for making SSH connections to other hosts seems …
- 10:49 AM Changeset [3793] by
- References #863: Secondary analysis scripts should set permissions on …
- 9:07 AM Changeset [3792] by
- References #863: Secondary analysis scripts should set permissions on …
Mar 17, 2016:
- 2:42 PM Changeset [3791] by
- References #861: YellowLabel? tracking wizard The "Create Pilot report …
- 1:47 PM Changeset [3790] by
- References #861: YellowLabel? tracking wizard Moved yellow label files …
- 1:37 PM Changeset [3789] by
- References #861: YellowLabel? tracking wizard Added "Create Pilot …
- 1:34 PM Changeset [3788] by
- References #861: YellowLabel? tracking wizard Moved code from the …
- 12:42 PM Changeset [3787] by
- References #861: YellowLabel? tracking wizard Added "Mark as …
- 11:08 AM Changeset [3786] by
- Refs #525. First version of the INCA data import. It is based on the …
Mar 16, 2016:
- 3:42 PM Changeset [3785] by
- References #861: YellowLabel? tracking wizard Fixes filtering problems …
- 3:33 PM Changeset [3784] by
-
References #861: YellowLabel? tracking wizard
Added
CompletedDate… - 1:20 PM Changeset [3783] by
- References #861: YellowLabel? tracking wizard Adding counter for …
- 12:54 PM Ticket #866 (Implement the "Start page" extension) created by
- Reggie should add itself as a "Start page". See …
- 8:14 AM Ticket #865 (Stray files wizard) created by
- The files in the project archive may not reflect what is registered in …
- 8:02 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) created by
- This is related to #863. The secondary analysis scripts will not give …
- 7:56 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) created by
- This is related to #864. Files generated on the project archive file …
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