Timeline



Mar 16, 2016:

4:55 PM Ticket #525 (Import data from INCA) updated by olle
Functional specification update: * First version of the INCA data …
3:42 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3785]) References #861: YellowLabel tracking wizard Fixes …
3:42 PM Changeset [3785] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Fixes filtering problems …
3:33 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3784]) References #861: YellowLabel tracking wizard Added …
3:33 PM Changeset [3784] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added CompletedDate
1:20 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3783]) References #861: YellowLabel tracking wizard Adding …
1:20 PM Changeset [3783] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Adding counter for …
12:54 PM Ticket #866 (Implement the "Start page" extension) created by Nicklas Nordborg
Reggie should add itself as a "Start page". See …
11:01 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) updated by Nicklas Nordborg
Executing the following command […] will output a list with file …
9:43 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by Nicklas Nordborg
Description changed
8:15 AM Ticket #865 (Stray files wizard) updated by Nicklas Nordborg
Description changed
8:14 AM Ticket #865 (Stray files wizard) created by Nicklas Nordborg
The files in the project archive may not reflect what is registered in …
8:02 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) updated by Nicklas Nordborg
Description changed
8:02 AM Ticket #864 (Implement a service that check and update file permission in ProjectArchive) created by Nicklas Nordborg
This is related to #863. The secondary analysis scripts will not give …
7:56 AM Ticket #863 (Secondary analysis scripts should set permissions on created files in ...) created by Nicklas Nordborg
This is related to #864. Files generated on the project archive file …

Mar 11, 2016:

9:20 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3782]) References #861: YellowLabel tracking wizard Added …
9:20 AM Changeset [3782] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added columns for Raw …

Mar 10, 2016:

3:53 PM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by Jari Häkkinen
Summary changed
3:40 PM Changeset [3781] by Nicklas Nordborg
Updating trunk version to 4.3-dev. It should have been done as part of …
3:37 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3780]) References #861: YellowLabel tracking wizard Added …
3:37 PM Changeset [3780] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added columns for RNA …
2:32 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
(In [3779]) References #861: YellowLabel tracking wizard Added the …
2:32 PM Changeset [3779] by Nicklas Nordborg
References #861: YellowLabel tracking wizard Added the main list page …
1:32 PM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
Description changed
11:25 AM Ticket #861 (YellowLabel tracking wizard) updated by Nicklas Nordborg
Status, Milestone changed
8:46 AM Ticket #862 (Import frozen tissue date wizard should have PatientCurator role) closed by Nicklas Nordborg
fixed: (In [3778]) Fixes #862: Import frozen tissue date wizard should have …
8:46 AM Changeset [3778] by Nicklas Nordborg
Fixes #862: Import frozen tissue date wizard should have …
8:45 AM Ticket #862 (Import frozen tissue date wizard should have PatientCurator role) updated by Nicklas Nordborg
Status, Type changed
Seems like there was a mismatch between the web interface and the …
8:42 AM Ticket #862 (Import frozen tissue date wizard should have PatientCurator role) created by Nicklas Nordborg
The Import frozen tissue date wizard (see #808) is currently enabled …

Mar 9, 2016:

11:11 AM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
Description changed
11:11 AM Ticket #861 (YellowLabel tracking wizard) created by Nicklas Nordborg
See #771. Implement a new wizard for tracking and summarize the …
9:16 AM Ticket #860 (NeoPrep need other barcode variants) closed by Nicklas Nordborg
fixed: (In [3777]) Fixes #860: NeoPrep need other barcode variants
9:16 AM Changeset [3777] by Nicklas Nordborg
Fixes #860: NeoPrep need other barcode variants
8:24 AM Ticket #860 (NeoPrep need other barcode variants) updated by Nicklas Nordborg
Status, Milestone changed
8:23 AM Changeset [3776] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.2
8:21 AM Ticket #860 (NeoPrep need other barcode variants) created by Nicklas Nordborg
Turned out that the NeoPrep kits ships in three different sets: i. …

Mar 7, 2016:

8:36 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
Added Reggie 4.2 screenshot (diff)
8:35 AM reggie-4.2.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 4.2
8:28 AM Milestone Reggie v4.2 completed
See Reggie extension page for more information.
8:28 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.2 (diff)
8:25 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.2 (diff)
8:24 AM reggie-4.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.2
8:23 AM Changeset [3775] by Nicklas Nordborg
Tagging Reggie 4.2
8:22 AM Changeset [3774] by Nicklas Nordborg
Preparing to release Reggie 4.2
8:13 AM Ticket #770 (Retraction wizard - Step 3: Destruction) closed by Nicklas Nordborg
fixed
8:12 AM Ticket #858 (Target volume for NeoPrep should be changed from 45 to 12.5) closed by Nicklas Nordborg
fixed: (In [3773]) Fixes #858: Target volume for NeoPrep should be changed …
8:12 AM Changeset [3773] by Nicklas Nordborg
Fixes #858: Target volume for NeoPrep should be changed from 45 to 12.5

Mar 4, 2016:

3:09 PM Ticket #859 (ProjectArchive should be shared with USE permission to the project) closed by Nicklas Nordborg
fixed: (In [3772]) Fixes #859: ProjectArchive should be shared with USE …
3:09 PM Changeset [3772] by Nicklas Nordborg
Fixes #859: ProjectArchive should be shared with USE permission to the …
2:13 PM Ticket #859 (ProjectArchive should be shared with USE permission to the project) created by Nicklas Nordborg
It is currently shared with READ permission only and USE permission …
2:10 PM Ticket #858 (Target volume for NeoPrep should be changed from 45 to 12.5) created by Nicklas Nordborg

Mar 2, 2016:

9:17 AM Ticket #525 (Import data from INCA) updated by olle
Design discussion: * It was decided to perform the INCA data import …

Feb 26, 2016:

3:02 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
(In [3771]) References #771: Yellow label highlighting a …
3:02 PM Changeset [3771] by Nicklas Nordborg
References #771: Yellow label highlighting a representative specimen …
2:02 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
(In [3770]) References #771: Yellow label highlighting a …
2:02 PM Changeset [3770] by Nicklas Nordborg
References #771: Yellow label highlighting a representative specimen …

Feb 24, 2016:

9:30 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) closed by Nicklas Nordborg
fixed
9:29 AM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) closed by Nicklas Nordborg
fixed
9:26 AM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by Nicklas Nordborg
(In [3769]) References #770: Retraction wizard - Step 3: Destruction …
9:26 AM Changeset [3769] by Nicklas Nordborg
References #770: Retraction wizard - Step 3: Destruction Setting …
9:18 AM Ticket #856 (Highlight YellowLabel specimen in secondary analysis wizards) closed by Nicklas Nordborg
fixed: (In [3768]) Fixes #856: Highlight YellowLabel specimen in secondary …
9:18 AM Changeset [3768] by Nicklas Nordborg
Fixes #856: Highlight YellowLabel specimen in secondary analysis …

Feb 23, 2016:

2:16 PM Ticket #857 (Highlight YellowLabel specimen in Flagged RNA wizard) closed by Nicklas Nordborg
fixed: (In [3767]) Fixes #857: Highlight YellowLabel specimen in Flagged RNA …
2:16 PM Changeset [3767] by Nicklas Nordborg
Fixes #857: Highlight YellowLabel specimen in Flagged RNA wizard
1:33 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
Description changed
1:33 PM Ticket #857 (Highlight YellowLabel specimen in Flagged RNA wizard) created by Nicklas Nordborg
See #771. RNA derived from YellowLabel specimen should just be …
1:30 PM Ticket #856 (Highlight YellowLabel specimen in secondary analysis wizards) created by Nicklas Nordborg
See #771. The wizards in the secondary analysis should just highlight …
1:23 PM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by Nicklas Nordborg
(In [3766]) References #855: Retraction fullow-up and destruction …
1:23 PM Changeset [3766] by Nicklas Nordborg
References #855: Retraction fullow-up and destruction wizards should …
1:22 PM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by Nicklas Nordborg
Milestone changed
1:15 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by Nicklas Nordborg
Milestone changed
11:45 AM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by Nicklas Nordborg
(In [3765]) References #855: Retraction fullow-up and destruction …
11:45 AM Changeset [3765] by Nicklas Nordborg
References #855: Retraction fullow-up and destruction wizards should …
11:05 AM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) updated by Nicklas Nordborg
Status changed

Feb 22, 2016:

12:50 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3764]) References #847: Highlight YellowLabel specimen in library …
12:50 PM Changeset [3764] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
8:34 AM Ticket #853 (RNA marked for ReProcess should be auto-selected even if no RNAQC ...) closed by Nicklas Nordborg
fixed: (In [3763]) Fixes #853: RNA marked for ReProcess should be …
8:34 AM Changeset [3763] by Nicklas Nordborg
Fixes #853: RNA marked for ReProcess should be auto-selected even if …

Feb 19, 2016:

2:27 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3762]) References #847: Highlight YellowLabel specimen in library …
2:27 PM Changeset [3762] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
1:04 PM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) created by Nicklas Nordborg
The current wizards require that the case-id is known. It would be …
12:54 PM Ticket #854 (Fix "Remaining quantity" filter in "Manual select" function) closed by Nicklas Nordborg
fixed: (In [3761]) Fixes #854: Fix "Remaining quantity" filter in "Manual …
12:54 PM Changeset [3761] by Nicklas Nordborg
Fixes #854: Fix "Remaining quantity" filter in "Manual select" function
12:43 PM Ticket #525 (Import data from INCA) updated by olle
Design discussion: Apart from technical considerations, there are …
11:49 AM Ticket #854 (Fix "Remaining quantity" filter in "Manual select" function) created by Nicklas Nordborg
The "Remaining quantity" filter seems to be fixed a >=1 even if the …
11:46 AM Ticket #853 (RNA marked for ReProcess should be auto-selected even if no RNAQC ...) created by Nicklas Nordborg
The current auto-select functionality (when selecting RNA items) …
11:43 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3760]) References #847: Highlight YellowLabel specimen in library …
11:43 AM Changeset [3760] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
9:34 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3759]) References #847: Highlight YellowLabel specimen in library …
9:34 AM Changeset [3759] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
8:54 AM Ticket #852 (Highlight YellowLabel specimen case summary) closed by Nicklas Nordborg
fixed: (In [3758]) Fixes #852: Highlight YellowLabel specimen case summary
8:54 AM Changeset [3758] by Nicklas Nordborg
Fixes #852: Highlight YellowLabel specimen case summary

Feb 18, 2016:

12:53 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3757]) References #847: Highlight YellowLabel specimen in library …
12:53 PM Changeset [3757] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
9:41 AM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) closed by olle
fixed: Ticket closed since the requested functionality has been added.
9:26 AM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
(In [3756]) Refs #851. The follow-up step of the retraction wizard …
9:26 AM Changeset [3756] by olle
Refs #851. The follow-up step of the retraction wizard updated in step …
8:55 AM Ticket #852 (Highlight YellowLabel specimen case summary) updated by Nicklas Nordborg
Owner, Type, Component, Milestone changed
8:55 AM Ticket #852 (Highlight YellowLabel specimen case summary) created by Nicklas Nordborg
8:54 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
Status changed
8:54 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) closed by Nicklas Nordborg
fixed: Seems to be working
8:18 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
(In [3755]) References #849: Demux wizard doesn't check that items …
8:18 AM Changeset [3755] by Nicklas Nordborg
References #849: Demux wizard doesn't check that items have names that …

Feb 17, 2016:

4:50 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
Functional specification update: * The follow-up step of the …
4:36 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
Traceability note: * The retraction wizard was introduced in Ticket …
4:30 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
Status, Owner changed
Ticket accepted.
4:30 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) created by olle
The second step of the retraction wizard allows dates to be set …
1:49 PM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
(In [3754]) References #849: Demux wizard doesn't check that items …
1:49 PM Changeset [3754] by Nicklas Nordborg
References #849: Demux wizard doesn't check that items have names that …
12:52 PM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
(In [3753]) References #849: Demux wizard doesn't check that items …
12:52 PM Changeset [3753] by Nicklas Nordborg
References #849: Demux wizard doesn't check that items have names that …
11:44 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
After investigating this issue it was found that it is just not a …
9:14 AM Changeset [3752] by Nicklas Nordborg
Merge Reggie 4.1.1 to the trunk.
9:04 AM Milestone Reggie v4.1.1 completed
Bug fixes for Reggie 4.1. Revision Log: …
9:02 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.1.1 (diff)
9:02 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.1.1 (diff)
9:01 AM reggie-4.1.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.1.1
9:00 AM Ticket #850 (Encoding problems with JSON data) closed by Nicklas Nordborg
fixed
8:59 AM Changeset [3751] by Nicklas Nordborg
Tagging Reggie 4.1.1
8:58 AM Changeset [3750] by Nicklas Nordborg
Preparing to release Reggie 4.1.1
8:51 AM Ticket #850 (Encoding problems with JSON data) updated by Nicklas Nordborg
(In [3749]) References #850: Encoding problems with JSON data Fixed …
8:51 AM Changeset [3749] by Nicklas Nordborg
References #850: Encoding problems with JSON data Fixed on the …
8:42 AM Ticket #850 (Encoding problems with JSON data) updated by Nicklas Nordborg
(In [3748]) References #850: Encoding problems with JSON data Fixed …
8:42 AM Changeset [3748] by Nicklas Nordborg
References #850: Encoding problems with JSON data Fixed on the server …
8:39 AM Ticket #850 (Encoding problems with JSON data) updated by Nicklas Nordborg
Status, Milestone changed

Feb 16, 2016:

2:53 PM Changeset [3747] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.1
2:51 PM Ticket #850 (Encoding problems with JSON data) created by Nicklas Nordborg
The Firefox update to Firefox 44.0.2 seems to have broken the …
9:43 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
Status changed

Feb 15, 2016:

2:54 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
Milestone changed
1:51 PM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) created by Nicklas Nordborg
Much of the automatic analysis pipeline builds on interacting with the …
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