Timeline



Feb 19, 2016:

2:27 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3762]) References #847: Highlight YellowLabel specimen in library …
2:27 PM Changeset [3762] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
1:04 PM Ticket #855 (Retraction follow-up and destruction wizards should make it easier to ...) created by Nicklas Nordborg
The current wizards require that the case-id is known. It would be …
12:54 PM Ticket #854 (Fix "Remaining quantity" filter in "Manual select" function) closed by Nicklas Nordborg
fixed: (In [3761]) Fixes #854: Fix "Remaining quantity" filter in "Manual …
12:54 PM Changeset [3761] by Nicklas Nordborg
Fixes #854: Fix "Remaining quantity" filter in "Manual select" function
12:43 PM Ticket #525 (Import data from INCA) updated by olle
Design discussion: Apart from technical considerations, there are …
11:49 AM Ticket #854 (Fix "Remaining quantity" filter in "Manual select" function) created by Nicklas Nordborg
The "Remaining quantity" filter seems to be fixed a >=1 even if the …
11:46 AM Ticket #853 (RNA marked for ReProcess should be auto-selected even if no RNAQC ...) created by Nicklas Nordborg
The current auto-select functionality (when selecting RNA items) …
11:43 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3760]) References #847: Highlight YellowLabel specimen in library …
11:43 AM Changeset [3760] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
9:34 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3759]) References #847: Highlight YellowLabel specimen in library …
9:34 AM Changeset [3759] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
8:54 AM Ticket #852 (Highlight YellowLabel specimen case summary) closed by Nicklas Nordborg
fixed: (In [3758]) Fixes #852: Highlight YellowLabel specimen case summary
8:54 AM Changeset [3758] by Nicklas Nordborg
Fixes #852: Highlight YellowLabel specimen case summary

Feb 18, 2016:

12:53 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
(In [3757]) References #847: Highlight YellowLabel specimen in library …
12:53 PM Changeset [3757] by Nicklas Nordborg
References #847: Highlight YellowLabel specimen in library preparation …
9:41 AM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) closed by olle
fixed: Ticket closed since the requested functionality has been added.
9:26 AM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
(In [3756]) Refs #851. The follow-up step of the retraction wizard …
9:26 AM Changeset [3756] by olle
Refs #851. The follow-up step of the retraction wizard updated in step …
8:55 AM Ticket #852 (Highlight YellowLabel specimen case summary) updated by Nicklas Nordborg
Owner, Type, Component, Milestone changed
8:55 AM Ticket #852 (Highlight YellowLabel specimen case summary) created by Nicklas Nordborg
8:54 AM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
Status changed
8:54 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) closed by Nicklas Nordborg
fixed: Seems to be working
8:18 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
(In [3755]) References #849: Demux wizard doesn't check that items …
8:18 AM Changeset [3755] by Nicklas Nordborg
References #849: Demux wizard doesn't check that items have names that …

Feb 17, 2016:

4:50 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
Functional specification update: * The follow-up step of the …
4:36 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
Traceability note: * The retraction wizard was introduced in Ticket …
4:30 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) updated by olle
Status, Owner changed
Ticket accepted.
4:30 PM Ticket #851 (Retraction wizard - Step 2: Follow up should allow dates to be set as N/A) created by olle
The second step of the retraction wizard allows dates to be set …
1:49 PM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
(In [3754]) References #849: Demux wizard doesn't check that items …
1:49 PM Changeset [3754] by Nicklas Nordborg
References #849: Demux wizard doesn't check that items have names that …
12:52 PM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
(In [3753]) References #849: Demux wizard doesn't check that items …
12:52 PM Changeset [3753] by Nicklas Nordborg
References #849: Demux wizard doesn't check that items have names that …
11:44 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
After investigating this issue it was found that it is just not a …
9:14 AM Changeset [3752] by Nicklas Nordborg
Merge Reggie 4.1.1 to the trunk.
9:04 AM Milestone Reggie v4.1.1 completed
Bug fixes for Reggie 4.1. Revision Log: …
9:02 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.1.1 (diff)
9:02 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.1.1 (diff)
9:01 AM reggie-4.1.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.1.1
9:00 AM Ticket #850 (Encoding problems with JSON data) closed by Nicklas Nordborg
fixed
8:59 AM Changeset [3751] by Nicklas Nordborg
Tagging Reggie 4.1.1
8:58 AM Changeset [3750] by Nicklas Nordborg
Preparing to release Reggie 4.1.1
8:51 AM Ticket #850 (Encoding problems with JSON data) updated by Nicklas Nordborg
(In [3749]) References #850: Encoding problems with JSON data Fixed …
8:51 AM Changeset [3749] by Nicklas Nordborg
References #850: Encoding problems with JSON data Fixed on the …
8:42 AM Ticket #850 (Encoding problems with JSON data) updated by Nicklas Nordborg
(In [3748]) References #850: Encoding problems with JSON data Fixed …
8:42 AM Changeset [3748] by Nicklas Nordborg
References #850: Encoding problems with JSON data Fixed on the server …
8:39 AM Ticket #850 (Encoding problems with JSON data) updated by Nicklas Nordborg
Status, Milestone changed

Feb 16, 2016:

2:53 PM Changeset [3747] by Nicklas Nordborg
Creating bugfix branch for Reggie 4.1
2:51 PM Ticket #850 (Encoding problems with JSON data) created by Nicklas Nordborg
The Firefox update to Firefox 44.0.2 seems to have broken the …
9:43 AM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) updated by Nicklas Nordborg
Status changed

Feb 15, 2016:

2:54 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) updated by Nicklas Nordborg
Milestone changed
1:51 PM Ticket #849 (Demux wizard doesn't check that items have names that are accepted by ...) created by Nicklas Nordborg
Much of the automatic analysis pipeline builds on interacting with the …

Feb 12, 2016:

1:53 PM Changeset [3746] by Nicklas Nordborg
Preparing for future release Reggie 4.2
1:52 PM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
No new visible features in Reggie 4.1 start page (diff)
1:44 PM Milestone Reggie v4.1 completed
See Reggie extension page for more information.
1:44 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 4.1 (diff)
1:43 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.1 (diff)
1:41 PM reggie-4.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.1
1:39 PM Changeset [3745] by Nicklas Nordborg
Tagging Reggie 4.1
1:39 PM Changeset [3744] by Nicklas Nordborg
Preparing to release Reggie 4.1
1:37 PM Ticket #848 (Enabled/disable experimental features in reggie-config.xml) closed by Nicklas Nordborg
fixed: (In [3743]) Fixes #848: Enabled/disable experimental features in …
1:37 PM Changeset [3743] by Nicklas Nordborg
Fixes #848: Enabled/disable experimental features in reggie-config.xml …
1:18 PM Ticket #848 (Enabled/disable experimental features in reggie-config.xml) created by Nicklas Nordborg
It would be nice to have a way to enable/disable experimental features …
12:56 PM Ticket #835 (Manual normalization with NeoPrep) closed by Nicklas Nordborg
fixed
12:55 PM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
Description changed
12:55 PM Ticket #847 (Highlight YellowLabel specimen in library preparation wizards) created by Nicklas Nordborg
See #771: Library preparation design The auto-select …
12:51 PM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) closed by Nicklas Nordborg
fixed
12:48 PM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) updated by Nicklas Nordborg
(In [3742]) References #846: Highlight YellowLabel specimen in sample …
12:48 PM Changeset [3742] by Nicklas Nordborg
References #846: Highlight YellowLabel specimen in sample processing …
9:52 AM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) updated by Nicklas Nordborg
(In [3741]) References #846: Highlight YellowLabel specimen in sample …
9:52 AM Changeset [3741] by Nicklas Nordborg
References #846: Highlight YellowLabel specimen in sample processing …

Feb 11, 2016:

3:44 PM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) updated by Nicklas Nordborg
(In [3740]) References #846: Highlight YellowLabel specimen in sample …
3:44 PM Changeset [3740] by Nicklas Nordborg
References #846: Highlight YellowLabel specimen in sample processing …
1:13 PM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) updated by Nicklas Nordborg
(In [3739]) References #846: Highlight YellowLabel specimen in sample …
1:13 PM Changeset [3739] by Nicklas Nordborg
References #846: Highlight YellowLabel specimen in sample processing …
1:02 PM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) updated by Nicklas Nordborg
(In [3738]) References #846: Highlight YellowLabel specimen in sample …
1:02 PM Changeset [3738] by Nicklas Nordborg
References #846: Highlight YellowLabel specimen in sample processing …
12:59 PM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) updated by Nicklas Nordborg
Status, Milestone changed
8:44 AM Ticket #771 (Yellow label highlighting a representative specimen) updated by Nicklas Nordborg
Description changed
8:43 AM Ticket #846 (Highlight YellowLabel specimen in sample processing wizards) created by Nicklas Nordborg
See #771: Partition wizard It should be visible in the …
8:36 AM Ticket #839 (Change YellowLabel status in "Pathology referral form registration" wizard) updated by Nicklas Nordborg
Description changed

Feb 10, 2016:

5:00 PM Milestone LabEnv v1.4 completed
See LabEnv extension page for more information.
4:59 PM Ticket #845 (Remove LabEnv references to Reggie) closed by olle
fixed: Ticket closed as the requested functionality has been added.
4:57 PM PluginDownload edited by olle
Added information on LabEnv 1.4 (diff)
4:55 PM net.sf.basedb.labenv edited by olle
Added information on LabEnv 1.4 (diff)
4:50 PM Changeset [3737] by olle
Tagging release 1.4
4:45 PM labenv-1.4.tar.gz attached to net.sf.basedb.labenv by olle
Added labenv-1.4.tar.gz
4:37 PM Ticket #845 (Remove LabEnv references to Reggie) updated by olle
(In [3736]) Refs #845. Updates due to version number change to …
4:37 PM Changeset [3736] by olle
Refs #845. Updates due to version number change to "1.4". 1. …
4:08 PM Ticket #845 (Remove LabEnv references to Reggie) updated by olle
(In [3735]) Refs #845. LabEnv updated by removing references to …
4:08 PM Changeset [3735] by olle
Refs #845. LabEnv updated by removing references to Reggie, and by …
2:19 PM Ticket #845 (Remove LabEnv references to Reggie) updated by olle
Description changed
Ticket description rewritten and note on displaying LabEnv version …
1:11 PM Ticket #845 (Remove LabEnv references to Reggie) updated by olle
Traceability note: * The lab environment extension was introduced in …
1:09 PM Ticket #845 (Remove LabEnv references to Reggie) updated by olle
Status changed
Ticket accepted.
12:37 PM Ticket #845 (Remove LabEnv references to Reggie) created by olle
LabEnv uses some css and javascript files from old versions of …
9:59 AM Ticket #843 (Set <max-base-version> to 3.8.0) updated by olle
(In [3734]) Refs #843. Outermost class path file updated due to …
9:59 AM Changeset [3734] by olle
Refs #843. Outermost class path file updated due to minimum BASE …
9:37 AM Ticket #843 (Set <max-base-version> to 3.8.0) closed by olle
fixed: Ticket closed as the requested changes has been added.
9:35 AM Ticket #843 (Set <max-base-version> to 3.8.0) updated by olle
(In [3733]) Refs #843. Updates due to maximum BASE version number set …
9:35 AM Changeset [3733] by olle
Refs #843. Updates due to maximum BASE version number set to "3.8.0" …
9:17 AM Ticket #843 (Set <max-base-version> to 3.8.0) updated by olle
(In [3732]) Refs #843. Updates due to minimum BASE version number …
9:17 AM Changeset [3732] by olle
Refs #843. Updates due to minimum BASE version number change to …
8:31 AM Ticket #843 (Set <max-base-version> to 3.8.0) updated by olle
Traceability note: * The lab environment extension was introduced in …
8:28 AM Ticket #842 (Update to Hibernate 5) updated by Nicklas Nordborg
Status, Owner changed
8:27 AM Ticket #844 (Switch to Java 8) closed by Nicklas Nordborg
fixed: (In [3731]) Fixes #844: Switch to Java 8
8:27 AM Changeset [3731] by Nicklas Nordborg
Fixes #844: Switch to Java 8
8:26 AM Ticket #843 (Set <max-base-version> to 3.8.0) updated by Nicklas Nordborg
Description changed
8:24 AM Ticket #843 (Set <max-base-version> to 3.8.0) updated by olle
Status changed
Ticket accepted.
8:14 AM Ticket #844 (Switch to Java 8) created by Nicklas Nordborg
Java 8 is recommended since BASE 3.6. See for example #783.
8:04 AM Ticket #843 (Set <max-base-version> to 3.8.0) created by Nicklas Nordborg
See #842 which must be fixed before LabEnv works with BASE 3.8. To …
7:59 AM Ticket #842 (Update to Hibernate 5) created by Nicklas Nordborg
BASE 3.8 is updating to Hibernate 5 …

Feb 9, 2016:

8:37 AM Ticket #525 (Import data from INCA) updated by olle
Recommended procedure for creating a tab-separated *.csv file suitable …

Feb 4, 2016:

8:18 AM Ticket #840 (Change cutoff for Caliper HiSense to 50ng/µl) closed by Nicklas Nordborg
fixed: (In [3730]) Fixes #840: Change cutoff for Caliper HiSense to 50ng/µl
8:18 AM Changeset [3730] by Nicklas Nordborg
Fixes #840: Change cutoff for Caliper HiSense to 50ng/µl
8:13 AM Ticket #841 (Change required BASE version to BASE 3.7) closed by Nicklas Nordborg
fixed: (In [3729]) Fixes #841: Change required BASE version to BASE 3.7
8:13 AM Changeset [3729] by Nicklas Nordborg
Fixes #841: Change required BASE version to BASE 3.7
8:02 AM Ticket #841 (Change required BASE version to BASE 3.7) created by Nicklas Nordborg
Th production server has been upgraded. Even if there is not currently …
7:59 AM Ticket #840 (Change cutoff for Caliper HiSense to 50ng/µl) created by Nicklas Nordborg
When deciding if a RNAQC should use the HiSense option or not there …

Feb 2, 2016:

3:54 PM Ticket #525 (Import data from INCA) updated by olle
Possible discrepancies between SCAN-B and INCA data: Possible causes …
12:31 PM Milestone MeLuDI v1.4.2 completed
Updates of the MeLuDI extension to BASE, a package of registration …
12:30 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.4.2 has been created.
12:27 PM PluginDownload edited by olle
Added information on MeLuDI 1.4.2 (diff)
12:23 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.4.2 (diff)
12:17 PM meludi-1.4.2.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.4.2
12:15 PM Changeset [3728] by olle
Tagging release 1.4.2
12:11 PM net.sf.basedb.meludi.notes1_4_1 edited by olle
Typos fixed and some text clarified (diff)
12:10 PM net.sf.basedb.meludi.notes1_4_2 created by olle
Added information on MeLuDI 1.4.2
11:59 AM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
(In [3727]) Refs #837. Updates due to version number change to …
11:59 AM Changeset [3727] by olle
Refs #837. Updates due to version number change to "1.4.2". 1. …
11:52 AM net.sf.basedb.meludi edited by olle
Added project update section (diff)
11:45 AM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
Project update: * On 2016-01-21 it was announced that the parent …

Jan 28, 2016:

12:39 PM Ticket #525 (Import data from INCA) updated by olle
Background info on INCA export files: * Traditionally, INCA export …
11:48 AM Ticket #525 (Import data from INCA) updated by olle
Background info: * INCA is an abbreviation of the Swedish expression …
11:47 AM Ticket #525 (Import data from INCA) updated by olle
Traceability note: * Creation of a csv file to be used when …
11:43 AM Ticket #525 (Import data from INCA) updated by olle
Status changed
Ticket accepted.
11:42 AM Ticket #525 (Import data from INCA) updated by olle
Owner changed
Ticket reassigned to "olle".
10:55 AM net.sf.basedb.reggie/notes41 edited by Nicklas Nordborg
(diff)
10:55 AM net.sf.basedb.reggie/notes41 created by Nicklas Nordborg
Adding update notes for Reggie 4.1
10:41 AM Ticket #839 (Change YellowLabel status in "Pathology referral form registration" wizard) closed by Nicklas Nordborg
fixed: (In [3726]) Fixes #839: Change YellowLabel status in "Pathology …
10:41 AM Changeset [3726] by Nicklas Nordborg
Fixes #839: Change YellowLabel status in "Pathology referral form …

Jan 27, 2016:

2:20 PM Ticket #835 (Manual normalization with NeoPrep) updated by Nicklas Nordborg
(In [3725]) References #835: Manual normalization with NeoPrep The …
2:20 PM Changeset [3725] by Nicklas Nordborg
References #835: Manual normalization with NeoPrep The "Lab protocols …
8:24 AM Ticket #835 (Manual normalization with NeoPrep) updated by Nicklas Nordborg
Status changed
8:24 AM Ticket #838 (Partial confirmation of demux job) closed by Nicklas Nordborg
fixed
8:23 AM Ticket #838 (Partial confirmation of demux job) updated by Nicklas Nordborg
(In [3724]) References #838: Partial confirmation of demux job The …
8:23 AM Changeset [3724] by Nicklas Nordborg
References #838: Partial confirmation of demux job The …

Jan 25, 2016:

12:59 PM Ticket #838 (Partial confirmation of demux job) updated by Nicklas Nordborg
(In [3723]) References #838: Partial confirmation of demux job Added …
12:59 PM Changeset [3723] by Nicklas Nordborg
References #838: Partial confirmation of demux job Added Partial to …

Jan 22, 2016:

3:31 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
(In [3722]) Refs #837. Updates due to version number change to …
3:31 PM Changeset [3722] by olle
Refs #837. Updates due to version number change to "1.4.2-dev". 1. …
2:29 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
(In [3721]) Refs #837. Updates due to version number change to …
2:29 PM Changeset [3721] by olle
Refs #837. Updates due to version number change to "1.4.2a1". 1. …
2:25 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
(In [3720]) Refs #837. Bug (hopefully) fixed in wizard "DNA/RNA …
2:25 PM Changeset [3720] by olle
Refs #837. Bug (hopefully) fixed in wizard "DNA/RNA …
2:23 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
Functional specification update: * A bug was found in wizard …
1:44 PM Ticket #838 (Partial confirmation of demux job) updated by Nicklas Nordborg
Status changed
1:29 PM Ticket #834 (Auto-analyze when sequencing has ended) closed by Nicklas Nordborg
fixed
12:30 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
(In [3719]) Refs #837. Support for marking DNA extracts for qPCR …
12:30 PM Changeset [3719] by olle
Refs #837. Support for marking DNA extracts for qPCR processing …
12:26 PM Ticket #837 (MeLuDI v.1.4.1 bug fixes and improvements) updated by olle
Functional specification update: * Support for marking DNA extracts …
11:47 AM Ticket #834 (Auto-analyze when sequencing has ended) updated by Nicklas Nordborg
(In [3718]) References #834: Auto-analyze when sequencing has ended …
11:47 AM Changeset [3718] by Nicklas Nordborg
References #834: Auto-analyze when sequencing has ended The "Register …
11:24 AM Ticket #839 (Change YellowLabel status in "Pathology referral form registration" wizard) created by Nicklas Nordborg
See #827 and #771: Selected Yellow label samples are highlighted in …
8:19 AM Ticket #834 (Auto-analyze when sequencing has ended) updated by Nicklas Nordborg
(In [3717]) References #834: Auto-analyze when sequencing has ended …
8:19 AM Changeset [3717] by Nicklas Nordborg
References #834: Auto-analyze when sequencing has ended Removing …
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