Timeline



Oct 30, 2015:

9:12 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Empirical rules for placing FPA aliquots on a start plate: * …
8:38 AM Ticket #782 (Fix compilation error when compiling against BASE 3.6) closed by Nicklas Nordborg
fixed: (In [3571]) Fixes #782: Fix compilation error when compiling against …
8:38 AM Changeset [3571] by Nicklas Nordborg
Fixes #782: Fix compilation error when compiling against BASE 3.6 …
8:36 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Section "Library preparation …
7:24 AM Ticket #782 (Fix compilation error when compiling against BASE 3.6) updated by Nicklas Nordborg
Status changed
7:20 AM Ticket #783 (Switch to Java 8) closed by Nicklas Nordborg
fixed: (In [3570]) Fixes #783: Switch to Java 8
7:20 AM Changeset [3570] by Nicklas Nordborg
Fixes #783: Switch to Java 8
7:17 AM Ticket #783 (Switch to Java 8) updated by Nicklas Nordborg
Status changed

Oct 29, 2015:

11:41 AM net.sf.basedb.reggie/HistoryOfReggie edited by Nicklas Nordborg
(diff)
11:40 AM reggie-3.7.png attached to net.sf.basedb.reggie/HistoryOfReggie by Nicklas Nordborg
Reggie 3.7
11:33 AM Changeset [3569] by Nicklas Nordborg
Preparing for future release Reggie 3.8
11:32 AM Milestone Reggie v3.7 completed
See Reggie extension page for more information.
11:32 AM PluginDownload edited by Nicklas Nordborg
Released Reggie 3.7 (diff)
11:31 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 3.7 (diff)
11:29 AM reggie-3.7.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 3.7
11:27 AM Changeset [3568] by Nicklas Nordborg
Tagging Reggie 3.7
11:25 AM Changeset [3567] by Nicklas Nordborg
Preparing to release Reggie 3.7
11:03 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) closed by Nicklas Nordborg
fixed
9:43 AM Ticket #812 (Pilot report wizard) closed by Nicklas Nordborg
fixed
9:35 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) updated by Nicklas Nordborg
(In [3566]) References #810: Gene report combiner plug-in should be …
9:35 AM Changeset [3566] by Nicklas Nordborg
References #810: Gene report combiner plug-in should be able to …

Oct 28, 2015:

2:46 PM Ticket #818 (Track volumes of RNAQC aliquots) closed by Nicklas Nordborg
fixed
2:45 PM Ticket #821 (Remote registration of RunParameters.xml in Register sequencing ...) updated by Nicklas Nordborg
(In [3565]) References #821: Remote registration of RunParameters.xml …
2:45 PM Changeset [3565] by Nicklas Nordborg
References #821: Remote registration of RunParameters.xml in Register …
1:57 PM Ticket #821 (Remote registration of RunParameters.xml in Register sequencing ...) closed by Nicklas Nordborg
fixed: (In [3564]) Fixes #821: Remote registration of RunParameters.xml in …
1:57 PM Changeset [3564] by Nicklas Nordborg
Fixes #821: Remote registration of RunParameters.xml in Register …
9:14 AM Ticket #821 (Remote registration of RunParameters.xml in Register sequencing ...) created by Nicklas Nordborg
The "Register sequencing started" requires that the …
8:04 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) updated by Nicklas Nordborg
(In [3563]) References #810: Gene report combiner plug-in should be …
8:04 AM Changeset [3563] by Nicklas Nordborg
References #810: Gene report combiner plug-in should be able to …

Oct 27, 2015:

2:05 PM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) reopened by Nicklas Nordborg
Re-opening this ticket in order to add support for password-protected …
8:54 AM Tickets #801,​816 batch updated by olle
(In [3562]) Refs #801. Refs #816. Bug fix: JSP file …
8:54 AM Changeset [3562] by olle
Refs #801. Refs #816. Bug fix: JSP file edit_libprep_kit_details.jsp
8:42 AM Tickets #801,​816 batch updated by olle
(In [3561]) Refs #801. Refs #816. JSP file …
8:42 AM Changeset [3561] by olle
Refs #801. Refs #816. JSP file inspect_lib_prep_kit_data.jsp and …
8:03 AM Tickets #801,​816 batch updated by olle
(In [3560]) Refs #801. Refs #816. Wizard "Inspect library preparation …
8:03 AM Changeset [3560] by olle
Refs #801. Refs #816. Wizard "Inspect library preparation kit data" in …

Oct 26, 2015:

4:45 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Wizard "Inspect library …

Oct 22, 2015:

1:59 PM Ticket #817 (Always display rna box position in normalization protocol) updated by Nicklas Nordborg
(In [3559]) References #817: Always display rna box position in …
1:59 PM Changeset [3559] by Nicklas Nordborg
References #817: Always display rna box position in normalization …

Oct 21, 2015:

2:16 PM Ticket #818 (Track volumes of RNAQC aliquots) updated by Nicklas Nordborg
(In [3558]) References #818: Track volumes of RNAQC aliquots Adding …
2:16 PM Changeset [3558] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots Adding files for the …
2:13 PM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3557]) References #812: Pilot report wizard Adding "Pilot …
2:13 PM Changeset [3557] by Nicklas Nordborg
References #812: Pilot report wizard Adding "Pilot report" thumbnail …
2:12 PM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3556]) References #812: Pilot report wizard Adjusting text and …
2:12 PM Changeset [3556] by Nicklas Nordborg
References #812: Pilot report wizard Adjusting text and plot …
8:50 AM Ticket #818 (Track volumes of RNAQC aliquots) updated by Nicklas Nordborg
(In [3555]) References #818: Track volumes of RNAQC aliquots The …
8:50 AM Changeset [3555] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots The 'Import RQS …

Oct 20, 2015:

3:48 PM Tickets #801,​816 batch updated by olle
(In [3554]) Refs #801. Refs #816. Sub-section "Reagent kit management …
3:48 PM Changeset [3554] by olle
Refs #801. Refs #816. Sub-section "Reagent kit management wizards" is …
3:46 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Sub-section "Reagent kit …
1:00 PM Tickets #801,​816 batch updated by olle
(In [3553]) Refs #801. Refs #816. Wizards "Add new consumables lot …
1:00 PM Changeset [3553] by olle
Refs #801. Refs #816. Wizards "Add new consumables lot number file" …
12:52 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Design update: * Wizards "Add new consumables lot number file" and …
11:29 AM Tickets #801,​816 batch updated by olle
(In [3552]) Refs #801. Refs #816. Wizard "Add new consumables lot …
11:29 AM Changeset [3552] by olle
Refs #801. Refs #816. Wizards "Add new consumables lot number file" …
11:27 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Wizard "Add new consumables lot …
11:00 AM Tickets #801,​816 batch updated by olle
(In [3551]) Refs #801. Refs #816. Wizard "Add new consumables lot …
11:00 AM Changeset [3551] by olle
Refs #801. Refs #816. Wizard "Add new consumables lot number file" in …
10:55 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Wizard "Add new consumables lot …

Oct 19, 2015:

1:57 PM Ticket #819 (Printable lab protocol from Create aliquots on Bioanalyzer/Caliper ...) closed by Nicklas Nordborg
fixed
1:56 PM Ticket #818 (Track volumes of RNAQC aliquots) updated by Nicklas Nordborg
(In [3550]) References #818: Track volumes of RNAQC aliquots …
1:56 PM Changeset [3550] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots Bioanalyzer volume …
11:48 AM Ticket #820 (Add "Inconclusive" as an option to the IHCQuality annotation) closed by Nicklas Nordborg
fixed: (In [3549]) Fixes #820: Add "Inconclusive" as an option to the …
11:48 AM Changeset [3549] by Nicklas Nordborg
Fixes #820: Add "Inconclusive" as an option to the IHCQuality annotation
11:43 AM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3548]) References #812: Pilot report wizard Adjusting text and …
11:43 AM Changeset [3548] by Nicklas Nordborg
References #812: Pilot report wizard Adjusting text and plot …
11:11 AM Ticket #820 (Add "Inconclusive" as an option to the IHCQuality annotation) created by Nicklas Nordborg
The installation wizard should install this option and the scoring …
11:01 AM Ticket #818 (Track volumes of RNAQC aliquots) updated by Nicklas Nordborg
Description changed
10:59 AM Tickets #782,​783 batch updated by Nicklas Nordborg
Milestone changed
8:40 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Design update: * 2015-10-16 it was decided to extend BASE with a new …

Oct 16, 2015:

11:53 AM Tickets #801,​816 batch updated by olle
(In [3547]) Refs #801. Refs #816. Sub-section "Reagent kit management …
11:53 AM Changeset [3547] by olle
Refs #801. Refs #816. Sub-section "Reagent kit management wizards" …
11:27 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Sub-section "Reagent kit …
10:30 AM Tickets #801,​816 batch updated by olle
(In [3546]) Refs #801. Refs #816. Wizard "Add new consumables lot …
10:30 AM Changeset [3546] by olle
Refs #801. Refs #816. Wizard "Add new consumables lot number file" in …
10:28 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Wizard "Add new consumables lot …
9:55 AM Ticket #818 (Track volumes of RNAQC aliquots) updated by Nicklas Nordborg
(In [3545]) References #818: Track volumes of RNAQC aliquots Changes …
9:55 AM Changeset [3545] by Nicklas Nordborg
References #818: Track volumes of RNAQC aliquots Changes the default …

Oct 15, 2015:

10:47 AM Ticket #818 (Track volumes of RNAQC aliquots) updated by Nicklas Nordborg
Status, Description changed
10:46 AM Ticket #819 (Printable lab protocol from Create aliquots on Bioanalyzer/Caliper ...) updated by Nicklas Nordborg
(In [3544]) References #819: Printable lab protocol from Create …
10:46 AM Changeset [3544] by Nicklas Nordborg
References #819: Printable lab protocol from Create aliquots on …

Oct 14, 2015:

2:11 PM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3543]) References #812: Pilot report wizard Minor adjusments to …
2:11 PM Changeset [3543] by Nicklas Nordborg
References #812: Pilot report wizard Minor adjusments to text …
1:52 PM Ticket #818 (Track volumes of RNAQC aliquots) updated by johan
Default RNAQC volumes for normal and HiSense are 2 µl and 6 µl …
12:36 PM Ticket #819 (Printable lab protocol from Create aliquots on Bioanalyzer/Caliper ...) updated by Nicklas Nordborg
Status changed
9:51 AM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3542]) References #812: Pilot report wizard Importing the …
9:51 AM Changeset [3542] by Nicklas Nordborg
References #812: Pilot report wizard Importing the …
9:35 AM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3541]) References #812: Pilot report wizard Setting R source …
9:35 AM Changeset [3541] by Nicklas Nordborg
References #812: Pilot report wizard Setting R source encoding to …

Oct 13, 2015:

4:45 PM Tickets #801,​816 batch updated by olle
(In [3540]) Refs #801. Refs #816. Updates due to version number change …
4:45 PM Changeset [3540] by olle
Refs #801. Refs #816. Updates due to version number change to …
4:09 PM Tickets #801,​816 batch updated by olle
(In [3539]) Refs #801. Refs #816. Updates due to version number change …
4:09 PM Changeset [3539] by olle
Refs #801. Refs #816. Updates due to version number change to …
3:59 PM Tickets #801,​816 batch updated by olle
(In [3538]) Refs #801. Refs #816. Sub-section "Reagent kit management …
3:59 PM Changeset [3538] by olle
Refs #801. Refs #816. Sub-section "Reagent kit management wizards" is …
3:56 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Sub-section "Reagent kit …
1:59 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Section "Library preparation …
1:31 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Placeholder for new decisions regarding extract placement on library …
1:20 PM Tickets #801,​816 batch updated by olle
(In [3537]) Refs #801. Refs #816. Wizard "Create new start DNA plate" …
1:20 PM Changeset [3537] by olle
Refs #801. Refs #816. Wizard "Create new start DNA plate" updated in …
1:19 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Wizard "Create new start DNA …
12:11 PM Tickets #801,​816 batch updated by olle
(In [3536]) Refs #801. Refs #816. It has been decided not to use role …
12:11 PM Changeset [3536] by olle
Refs #801. Refs #816. It has been decided not to use role …
12:09 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * It has been decided not to use …
11:53 AM Ticket #819 (Printable lab protocol from Create aliquots on Bioanalyzer/Caliper ...) created by Nicklas Nordborg
The third step in this wizard contains information that is needed in …
11:50 AM Ticket #818 (Track volumes of RNAQC aliquots) created by Nicklas Nordborg
The original quantity assigned to RNA items currently assumes that a …

Oct 8, 2015:

2:09 PM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3535]) References #812: Pilot report wizard Parse the *.txt …
2:09 PM Changeset [3535] by Nicklas Nordborg
References #812: Pilot report wizard Parse the *.txt files containing …
1:38 PM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3534]) References #812: Pilot report wizard Adding link to the …
1:38 PM Changeset [3534] by Nicklas Nordborg
References #812: Pilot report wizard Adding link to the pilot report …
9:44 AM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3533]) References #812: Pilot report wizard The pilot report now …
9:44 AM Changeset [3533] by Nicklas Nordborg
References #812: Pilot report wizard The pilot report now uses the …

Oct 5, 2015:

4:23 PM Tickets #801,​816 batch updated by olle
(In [3532]) Refs #801. Refs #816. Case summary updated to present …
4:23 PM Changeset [3532] by olle
Refs #801. Refs #816. Case summary updated to present information on …
4:22 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Case summary should be updated to …
1:27 PM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3531]) References #812: Pilot report wizard Prepared the script …
1:27 PM Changeset [3531] by Nicklas Nordborg
References #812: Pilot report wizard Prepared the script for sending …
11:59 AM Tickets #801,​816 batch updated by olle
(In [3530]) Refs #801. Refs #816. Updates due to version number change …
11:59 AM Changeset [3530] by olle
Refs #801. Refs #816. Updates due to version number change to …
11:30 AM Tickets #801,​816 batch updated by olle
(In [3529]) Refs #801. Refs #816. Updates due to version number change …
11:30 AM Changeset [3529] by olle
Refs #801. Refs #816. Updates due to version number change to …
11:03 AM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3528]) References #812: Pilot report wizard Print out molecular …
11:03 AM Changeset [3528] by Nicklas Nordborg
References #812: Pilot report wizard Print out molecular subtype …
9:40 AM Tickets #801,​816 batch updated by olle
(In [3527]) Refs #801. Refs #816. Roles MeludiRole.LIBRARY_PREP and …
9:40 AM Changeset [3527] by olle
Refs #801. Refs #816. Roles MeludiRole.LIBRARY_PREP and …
8:57 AM Tickets #801,​816 batch updated by olle
(In [3526]) Refs #801. Refs #816. Case summary updated to present …
8:57 AM Changeset [3526] by olle
Refs #801. Refs #816. Case summary updated to present information on …
8:55 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Case summary should be updated to …
8:52 AM Ticket #812 (Pilot report wizard) updated by Nicklas Nordborg
(In [3525]) References #812: Pilot report wizard The pilot report is …
8:52 AM Changeset [3525] by Nicklas Nordborg
References #812: Pilot report wizard The pilot report is updated to …

Oct 2, 2015:

9:22 AM Ticket #817 (Always display rna box position in normalization protocol) closed by Nicklas Nordborg
fixed: (In [3524]) Fixes #817: Always display rna box position in …
9:22 AM Changeset [3524] by Nicklas Nordborg
Fixes #817: Always display rna box position in normalization protocol
9:15 AM Ticket #817 (Always display rna box position in normalization protocol) created by Nicklas Nordborg
This column is currently hidden when all rna items are from the same …

Oct 1, 2015:

4:48 PM Tickets #801,​816 batch updated by olle
(In [3523]) Refs #801. Refs #816. Updates due to version number change …
4:48 PM Changeset [3523] by olle
Refs #801. Refs #816. Updates due to version number change to …
4:48 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) updated by olle
Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690
4:46 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) updated by olle
Status changed
Ticket accepted.
4:46 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) created by olle
This ticket covers bug fixes and improvements to MeLuDI v.1.3.3.
4:42 PM Milestone MeLuDI v1.3.3 completed
Updates of the MeLuDI extension to BASE, a package of registration …
4:42 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Milestone changed
Milestone renamed
4:41 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by olle
Milestone changed
Milestone renamed
4:40 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Milestone changed
Milestone changed to MeLuDI v1.3.4, as MeLuDI v1.3.3 has been released.
4:38 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) closed by olle
fixed: Ticket closed as MeLuDI version 1.3.3 has been created.
4:31 PM PluginDownload edited by olle
Added information on MeLuDI 1.3.3 (diff)
4:30 PM net.sf.basedb.meludi edited by olle
Added information on MeLuDI 1.3.3 (diff)
4:25 PM meludi-1.3.3.tar.gz attached to net.sf.basedb.meludi by olle
MeLuDI BASE extension package version 1.3.3
4:21 PM Changeset [3522] by olle
Tagging release 1.3.3
4:17 PM Tickets #801,​815 batch updated by olle
(In [3521]) Refs #801. Refs #815. Updates due to version number change …
4:17 PM Changeset [3521] by olle
Refs #801. Refs #815. Updates due to version number change to …
4:06 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by olle
Relase of MeLuDI 1.3.3: * Since the wizard "Update processed start …
4:00 PM net.sf.basedb.meludi.notes1_3_3 created by olle
Added information on MeLuDI 1.3.3
3:05 PM Tickets #801,​815 batch updated by olle
(In [3520]) Refs #801. Refs #815. Javascript file select_dna.js in …
3:05 PM Changeset [3520] by olle
Refs #801. Refs #815. Javascript file select_dna.js in …
2:51 PM Tickets #801,​815 batch updated by olle
(In [3519]) Refs #801. Refs #815. Wizard "Create new start DNA plate" …
2:51 PM Changeset [3519] by olle
Refs #801. Refs #815. Wizard "Create new start DNA plate" updated …
2:48 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * Wizard "Create new start DNA …
2:22 PM Tickets #801,​815 batch updated by olle
(In [3518]) Refs #801. Refs #815. Since it may take some time before …
2:22 PM Changeset [3518] by olle
Refs #801. Refs #815. Since it may take some time before the list of …
2:20 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by olle
Functional specification update: * It may take some time before the …
1:57 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by olle
(In [3517]) Refs #815. Bug fix: The wizard "DNA/RNA …
1:57 PM Changeset [3517] by olle
Refs #815. Bug fix: The wizard "DNA/RNA registration/quantification" …
1:54 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by olle
Bug fix: * The wizard "DNA/RNA registration/quantification" only …
12:55 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by olle
(In [3516]) Refs #815. Bug fix: The wizard "Update processed start …
12:55 PM Changeset [3516] by olle
Refs #815. Bug fix: The wizard "Update processed start lists with lot …
12:53 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by olle
Bug fix: * The wizard "Update processed start lists with lot numbers …

Sep 30, 2015:

10:55 AM net.sf.basedb.meludi.background_software_info edited by olle
Added info on BASE annotations (diff)
10:09 AM net.sf.basedb.meludi.background_software_info edited by olle
Added info on MeLuDI project vs. software clarification (diff)
10:07 AM net.sf.basedb.meludi.background_software_info edited by olle
Added info on MeLuDI project vs. software (diff)
9:03 AM net.sf.basedb.meludi.background_software_info edited by olle
Added more info in the description section. (diff)
8:51 AM net.sf.basedb.meludi.background_software_info created by olle
Added initial version of wiki page.
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