Timeline
Oct 1, 2015:
- 4:48 PM Tickets #801,816 batch updated by
- (In [3523]) Refs #801. Refs #816. Updates due to version number change …
- 4:48 PM Changeset [3523] by
- Refs #801. Refs #816. Updates due to version number change to …
- 4:48 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) updated by
- Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690 …
- 4:46 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) updated by
-
Status changed
Ticket accepted. - 4:46 PM Ticket #816 (MeLuDI v.1.3.3 bug fixes and improvements) created by
- This ticket covers bug fixes and improvements to MeLuDI v.1.3.3.
- 4:42 PM Milestone MeLuDI v1.3.3 completed
- Updates of the MeLuDI extension to BASE, a package of registration …
- 4:42 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by
-
Milestone changed
Milestone renamed - 4:41 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
-
Milestone changed
Milestone renamed - 4:40 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by
-
Milestone changed
Milestone changed to MeLuDI v1.3.4, as MeLuDI v1.3.3 has been released. - 4:38 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) closed by
- fixed: Ticket closed as MeLuDI version 1.3.3 has been created.
- 4:31 PM PluginDownload edited by
- Added information on MeLuDI 1.3.3 (diff)
- 4:30 PM net.sf.basedb.meludi edited by
- Added information on MeLuDI 1.3.3 (diff)
- 4:21 PM Changeset [3522] by
- Tagging release 1.3.3
- 4:17 PM Tickets #801,815 batch updated by
- (In [3521]) Refs #801. Refs #815. Updates due to version number change …
- 4:17 PM Changeset [3521] by
- Refs #801. Refs #815. Updates due to version number change to …
- 4:06 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- Relase of MeLuDI 1.3.3: * Since the wizard "Update processed start …
- 4:00 PM net.sf.basedb.meludi.notes1_3_3 created by
- Added information on MeLuDI 1.3.3
- 3:05 PM Tickets #801,815 batch updated by
-
(In [3520]) Refs #801. Refs #815. Javascript file
select_dna.jsin … - 3:05 PM Changeset [3520] by
-
Refs #801. Refs #815. Javascript file
select_dna.jsin … - 2:51 PM Tickets #801,815 batch updated by
- (In [3519]) Refs #801. Refs #815. Wizard "Create new start DNA plate" …
- 2:51 PM Changeset [3519] by
- Refs #801. Refs #815. Wizard "Create new start DNA plate" updated …
- 2:48 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by
- Functional specification update: * Wizard "Create new start DNA …
- 2:22 PM Tickets #801,815 batch updated by
- (In [3518]) Refs #801. Refs #815. Since it may take some time before …
- 2:22 PM Changeset [3518] by
- Refs #801. Refs #815. Since it may take some time before the list of …
- 2:20 PM Ticket #801 (MeLuDI library preparation wizards first version) updated by
- Functional specification update: * It may take some time before the …
- 1:57 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- (In [3517]) Refs #815. Bug fix: The wizard "DNA/RNA …
- 1:57 PM Changeset [3517] by
- Refs #815. Bug fix: The wizard "DNA/RNA registration/quantification" …
- 1:54 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- Bug fix: * The wizard "DNA/RNA registration/quantification" only …
- 12:55 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- (In [3516]) Refs #815. Bug fix: The wizard "Update processed start …
- 12:55 PM Changeset [3516] by
- Refs #815. Bug fix: The wizard "Update processed start lists with lot …
- 12:53 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- Bug fix: * The wizard "Update processed start lists with lot numbers …
Sep 30, 2015:
- 10:55 AM net.sf.basedb.meludi.background_software_info edited by
- Added info on BASE annotations (diff)
- 10:09 AM net.sf.basedb.meludi.background_software_info edited by
- Added info on MeLuDI project vs. software clarification (diff)
- 10:07 AM net.sf.basedb.meludi.background_software_info edited by
- Added info on MeLuDI project vs. software (diff)
- 9:03 AM net.sf.basedb.meludi.background_software_info edited by
- Added more info in the description section. (diff)
- 8:51 AM net.sf.basedb.meludi.background_software_info created by
- Added initial version of wiki page.
Sep 29, 2015:
- 2:14 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- (In [3515]) Refs #815. The "MeLuDI quarter/month report" in the …
- 2:14 PM Changeset [3515] by
- Refs #815. The "MeLuDI quarter/month report" in the "Sample processing …
- 2:12 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- Functional specification update: * The "MeLuDI quarter/month report" …
- 12:27 PM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- (In [3514]) Refs #815. Java servlet class/file …
- 12:27 PM Changeset [3514] by
- Refs #815. Java servlet class/file …
Sep 24, 2015:
- 12:33 PM PluginDownload edited by
- Added information on MeLuDI 1.3.2 (diff)
- 11:15 AM Ticket #811 (Add support for adding personal information to the Gene report ...) closed by
- fixed
- 11:15 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) closed by
- fixed
- 11:13 AM Ticket #812 (Pilot report wizard) updated by
- (In [3513]) References #812: Pilot report wizard Fixes title on the …
- 11:13 AM Changeset [3513] by
- References #812: Pilot report wizard Fixes title on the "Gene/Pilot …
- 9:56 AM Tickets #801,815 batch updated by
- (In [3512]) Refs #801. Refs #815. Updates due to version number change …
- 9:56 AM Changeset [3512] by
- Refs #801. Refs #815. Updates due to version number change to …
- 9:54 AM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
- Traceability note: * MeLuDi v.1.0 was introduced in Ticket #690 …
- 9:53 AM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) updated by
-
Status changed
Ticket accepted. - 9:51 AM Ticket #815 (MeLuDI v.1.3.2 bug fixes and improvements) created by
- This ticket covers bug fixes and improvements to MeLuDI v.1.3.2.
- 9:48 AM Milestone MeLuDI v1.3.2 completed
- Updates of the MeLuDI extension to BASE, a package of registration …
- 9:46 AM Ticket #801 (MeLuDI library preparation wizards first version) updated by
-
Milestone changed
Milestone changed to MeLuDI v1.3.3, as MeLuDI v1.3.2 has been released. - 9:39 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) closed by
- fixed: Ticket closed as MeLuDI version 1.3.2 has been created.
- 9:37 AM net.sf.basedb.meludi edited by
- Added information on MeLuDI 1.3.2 (diff)
- 9:25 AM Changeset [3511] by
- Tagging release 1.3.2
- 9:18 AM Ticket #814 (New 1x16 pool layout that is offset to the left) closed by
- fixed: (In [3510]) Fixes #814: New 1x16 pool layout that is offset to the left
- 9:18 AM Changeset [3510] by
- Fixes #814: New 1x16 pool layout that is offset to the left
- 9:17 AM Ticket #814 (New 1x16 pool layout that is offset to the left) created by
- To avoid issues with rotating the plate in the lab the placement of …
- 9:15 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3509]) Refs #802. Updates due to version number change to …
- 9:15 AM Changeset [3509] by
-
Refs #802. Updates due to version number change to "
1.3.2". 1. … - 9:10 AM Ticket #812 (Pilot report wizard) updated by
- (In [3508]) References #812: Pilot report wizard The …
- 9:10 AM Changeset [3508] by
- References #812: Pilot report wizard The auto-confirmation service …
- 9:02 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
-
(In [3507]) Refs #802. MeLuDI
READMEfile in/updated with minor … - 9:02 AM Changeset [3507] by
-
Refs #802. MeLuDI
READMEfile in/updated with minor changes, … - 8:38 AM net.sf.basedb.meludi.notes1_3_2 edited by
- Update instructions reformatted in new order (diff)
- 8:25 AM net.sf.basedb.meludi.notes1_3_2 edited by
- Removed old stuff erroneously kept (diff)
- 8:21 AM net.sf.basedb.meludi.notes1_3_2 edited by
- Minor changes to information on MeLuDI 1.3.2 (diff)
- 7:56 AM net.sf.basedb.meludi.notes1_3_2 edited by
- Completed information on MeLuDI 1.3.2 (and removed old stuff) (diff)
Sep 23, 2015:
- 4:30 PM net.sf.basedb.meludi.notes1_3_2 created by
- Added information on MeLuDI 1.3.2
- 3:28 PM Ticket #812 (Pilot report wizard) updated by
- (In [3506]) References #812: Pilot report wizard Refactored the …
- 3:28 PM Changeset [3506] by
- References #812: Pilot report wizard Refactored the reporting …
- 3:16 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3505]) Refs #802. Section "Statistics and reporting wizards" …
- 3:16 PM Changeset [3505] by
- Refs #802. Section "Statistics and reporting wizards" extended with a …
- 2:14 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- Functional specification update: * The "Statistics and reporting …
- 12:41 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3504]) Refs #802. Sample source report wizards updated to only …
- 12:41 PM Changeset [3504] by
- Refs #802. Sample source report wizards updated to only include MeLuDI …
- 12:40 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- Functional specification update: * The Sample source report wizards …
Sep 22, 2015:
- 1:41 PM Ticket #811 (Add support for adding personal information to the Gene report ...) updated by
- (In [3503]) References #811: Add support for adding personal …
- 1:41 PM Changeset [3503] by
- References #811: Add support for adding personal information to the …
- 1:39 PM Ticket #811 (Add support for adding personal information to the Gene report ...) updated by
-
Status changed
- 11:10 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3502]) Refs #802. The "DNA/RNA extraction wizards" section …
- 11:10 AM Changeset [3502] by
- Refs #802. The "DNA/RNA extraction wizards" section updated with a new …
- 9:53 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- Functional specification update: * The DNA/RNA extraction wizards …
Sep 21, 2015:
- 3:53 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3501]) Refs #802. The DNA/RNA extraction wizards updated to allow …
- 3:53 PM Changeset [3501] by
- Refs #802. The DNA/RNA extraction wizards updated to allow input of …
- 2:42 PM Ticket #812 (Pilot report wizard) updated by
- (In [3500]) References #812: Pilot report wizard The combine reports …
- 2:42 PM Changeset [3500] by
- References #812: Pilot report wizard The combine reports plug-in now …
- 2:27 PM Ticket #812 (Pilot report wizard) updated by
- (In [3499]) References #812: Pilot report wizard Refactored the gene …
- 2:27 PM Changeset [3499] by
- References #812: Pilot report wizard Refactored the gene report …
Sep 18, 2015:
- 2:22 PM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) updated by
- (In [3498]) References #810: Gene report combiner plug-in should be …
- 2:22 PM Changeset [3498] by
- References #810: Gene report combiner plug-in should be able to …
- 10:27 AM Tickets #812,810 batch updated by
-
Status changed
- 10:24 AM Milestone Reggie v3.6.1 completed
- Bug fixes for Reggie 3.6. Revision Log: …
- 9:32 AM Changeset [3497] by
- Merged Reggie 3.6.1 to trunk.
- 9:30 AM net.sf.basedb.reggie edited by
- (diff)
- 9:30 AM net.sf.basedb.reggie edited by
- Released Reggie 3.6.1 (diff)
- 9:27 AM Changeset [3496] by
- Tagging Reggie 3.6.1
- 9:26 AM Changeset [3495] by
- Preparing to release Reggie 3.6.1.
- 9:26 AM Ticket #813 (IndexOutOfBoundsException when selecting 7 lysates in the Lab Tracking ...) updated by
-
Milestone changed
- 9:23 AM Ticket #813 (IndexOutOfBoundsException when selecting 7 lysates in the Lab Tracking ...) closed by
- fixed: (In [3494]) Fixes #813: IndexOutOfBoundsException when selecting 7 …
- 9:23 AM Changeset [3494] by
- Fixes #813: IndexOutOfBoundsException when selecting 7 lysates in the …
- 9:19 AM Changeset [3493] by
- Creating bugfix branch for Reggie 3.6
- 9:09 AM Ticket #813 (IndexOutOfBoundsException when selecting 7 lysates in the Lab Tracking ...) created by
- […] Seems to work for all 1-6 and 8-12 lysates.
- 9:01 AM Ticket #812 (Pilot report wizard) updated by
- (In [3492]) References #812: Pilot report wizard Added a pilot wizard …
- 9:01 AM Changeset [3492] by
- References #812: Pilot report wizard Added a pilot wizard stub. The …
Sep 17, 2015:
- 10:38 AM Ticket #812 (Pilot report wizard) created by
- A new report wizard for the clinical pilot project is needed. It is …
- 10:00 AM Ticket #811 (Add support for adding personal information to the Gene report ...) created by
- Early versions of this plug-in had support for this so it should not …
- 9:53 AM Ticket #810 (Gene report combiner plug-in should be able to combine to a zip file) created by
- The current version of the "Gene report combiner" plug-in takes the …
- 9:47 AM net.sf.basedb.reggie/HistoryOfReggie edited by
- Added Reggie 3.6 screenshot (diff)
- 9:42 AM PluginDownload edited by
- Released Reggie 3.6 (diff)
- 9:42 AM Changeset [3491] by
- Preparing for future release Reggie 3.7
- 9:40 AM Milestone Reggie v3.6 completed
- See Reggie extension page for more information.
- 9:40 AM net.sf.basedb.reggie edited by
- Released Reggie 3.6 (diff)
- 9:37 AM Changeset [3490] by
- Tagging Reggie 3.6
- 9:36 AM Changeset [3489] by
- Preparing to release Reggie 3.6
Sep 16, 2015:
- 2:01 PM Ticket #799 (TypeError: bestStain is null in case summary) updated by
-
Component changed
- 1:56 PM Ticket #808 (Import wizard for frozen tissue dates) closed by
- fixed: (In [3488]) Fixes #808: Import wizard for frozen tissue dates The …
- 1:56 PM Changeset [3488] by
- Fixes #808: Import wizard for frozen tissue dates The wizard and …
- 11:10 AM Ticket #809 (Improve performance of demux+merge step) closed by
- fixed: Think it is time for some real tests now. What has been done so far …
- 11:08 AM Ticket #809 (Improve performance of demux+merge step) updated by
- (In [3487]) References #809: Improve performance of demux+merge step …
- 11:08 AM Changeset [3487] by
- References #809: Improve performance of demux+merge step Switched to …
- 9:57 AM Ticket #809 (Improve performance of demux+merge step) updated by
- Due to some file system problems on compute-2-0 I had to force my last …
- 8:08 AM Ticket #809 (Improve performance of demux+merge step) updated by
- Results comparing gzip, gzip -1 and pigz. || Times || …
Sep 15, 2015:
- 3:35 PM Ticket #809 (Improve performance of demux+merge step) updated by
- Just found out about Pigz: http://zlib.net/pigz/ I reverted back to …
- 1:38 PM Ticket #809 (Improve performance of demux+merge step) updated by
- (In [3486]) References #809: Improve performance of demux+merge step …
- 1:38 PM Changeset [3486] by
- References #809: Improve performance of demux+merge step Start gzip …
- 9:43 AM Ticket #809 (Improve performance of demux+merge step) updated by
-
I have now made some initial tests with running
gzip -1in the … - 8:13 AM Ticket #809 (Improve performance of demux+merge step) updated by
- (In [3485]) References #809: Improve performance of demux+merge step …
- 8:13 AM Changeset [3485] by
- References #809: Improve performance of demux+merge step Added time …
- 8:11 AM Ticket #809 (Improve performance of demux+merge step) updated by
-
Status changed
Sep 14, 2015:
- 2:33 PM Ticket #808 (Import wizard for frozen tissue dates) updated by
- (In [3484]) References #808: Import wizard for frozen tissue dates …
- 2:33 PM Changeset [3484] by
- References #808: Import wizard for frozen tissue dates Added …
- 1:31 PM Ticket #808 (Import wizard for frozen tissue dates) updated by
-
Status, Milestone changed
- 10:41 AM Ticket #770 (Retraction wizard - Step 3: Destruction) updated by
-
Milestone changed
- 9:42 AM Ticket #809 (Improve performance of demux+merge step) created by
- Sometimes this step is taking too long time. Typical run times are …
Sep 11, 2015:
- 12:43 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- Functional specification update: * The DNA/RNA extraction wizards …
- 8:20 AM Ticket #808 (Import wizard for frozen tissue dates) created by
-
A new annotation
FrozenTissueDateshould be created and used for …
Sep 9, 2015:
- 11:10 AM Ticket #807 (Flag RNA checkboxes should not be checked when inactive) closed by
- fixed: (In [3483]) Fixes #807: Flag RNA checkboxes should not be checked when …
- 11:10 AM Changeset [3483] by
- Fixes #807: Flag RNA checkboxes should not be checked when inactive …
- 11:00 AM Ticket #806 (Confirmation wizards fail to report problems with deleting items as errors) closed by
- fixed: (In [3482]) Fixes #806: Confirmation wizards fail to report problems …
- 11:00 AM Changeset [3482] by
- Fixes #806: Confirmation wizards fail to report problems with deleting …
- 9:57 AM Ticket #807 (Flag RNA checkboxes should not be checked when inactive) created by
- In the "Confirm demux..." wizard the "Flag RNA" and "Align" checkboxes …
- 9:53 AM Ticket #806 (Confirmation wizards fail to report problems with deleting items as errors) updated by
-
Summary changed
- 9:51 AM Ticket #806 (Confirmation wizards fail to report problems with deleting items as errors) created by
- This is caused by a BASE bug: …
- 8:19 AM Ticket #805 (LinkedSpecimen should set value for items with missing date) closed by
- fixed: (In [3481]) Fixes #805: LinkedSpecimen should set value for items with …
- 8:19 AM Changeset [3481] by
- Fixes #805: LinkedSpecimen should set value for items with missing …
- 8:16 AM Ticket #805 (LinkedSpecimen should set value for items with missing date) created by
- The first case in the bullet list: * If the patient has any specimen …
Sep 8, 2015:
- 1:43 PM net.sf.basedb.yubikey/using edited by
- Information about root account was outdated (diff)
Sep 4, 2015:
- 12:37 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3480]) Refs #802. DNA/RNA extraction wizard for lab tracking …
- 12:37 PM Changeset [3480] by
- Refs #802. DNA/RNA extraction wizard for lab tracking protocol for …
- 11:30 AM Ticket #804 (Lab tracking protocol for Allprep isolation should include volume of ...) closed by
- fixed: (In [3479]) Fixes #804: Lab tracking protocol for Allprep isolation …
- 11:30 AM Changeset [3479] by
- Fixes #804: Lab tracking protocol for Allprep isolation should include …
- 11:28 AM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- Functional specification update: * DNA/RNA extraction wizard for lab …
Sep 3, 2015:
- 2:36 PM Ticket #802 (MeLuDI v.1.3.1 bug fixes and improvements) updated by
- (In [3478]) Refs #802. MeLuDI case registration updated to create …
- 2:36 PM Changeset [3478] by
- Refs #802. MeLuDI case registration updated to create storage box …
- 2:01 PM Changeset [3477] by
- Added note on what is considered a negative control.
- 1:31 PM Ticket #804 (Lab tracking protocol for Allprep isolation should include volume of ...) created by
- The volume of RNAse free water to use in the QIAcube depends on the …
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