Timeline
Sep 12, 2014:
- 3:03 PM Ticket #631 (Add data check to the confirm sequencing ended wizard) closed by
- fixed
- 2:35 PM Changeset [2663] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 2:14 PM Changeset [2662] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 12:36 PM Ticket #633 (Adapter peak fraction=0 is displayed as 'unknown' in the pooling wizard) closed by
- fixed: (In [2661]) Fixes #633: Adapter peak fraction=0 is displayed as …
- 12:36 PM Changeset [2661] by
- Fixes #633: Adapter peak fraction=0 is displayed as 'unknown' in the …
- 12:29 PM Ticket #632 (Increase max volume limit in pooling wizard to 20µl) closed by
- fixed: (In [2660]) Fixes #632: Increase max volume limit in pooling wizard to 20µl
- 12:29 PM Changeset [2660] by
- Fixes #632: Increase max volume limit in pooling wizard to 20µl
- 12:25 PM Ticket #633 (Adapter peak fraction=0 is displayed as 'unknown' in the pooling wizard) created by
- 12:24 PM Ticket #632 (Increase max volume limit in pooling wizard to 20µl) created by
- 10:33 AM Changeset [2659] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 9:59 AM net.sf.basedb.labenv edited by
- (diff)
- 9:05 AM Changeset [2658] by
- References #571: Update Reggie to new scripting pattern (first step) …
Sep 11, 2014:
- 3:40 PM Changeset [2657] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 3:23 PM Changeset [2656] by
- Resetting all debug flags.
- 3:18 PM Changeset [2655] by
-
References #547: Start Demux and Merge
Reset the
AutoProcessing… - 3:14 PM Changeset [2654] by
- References #547: Start Demux and Merge Added 'ulimit' option for the …
- 2:23 PM Changeset [2653] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 11:25 AM Changeset [2652] by
- References #571: Update Reggie to new scripting pattern (first step) …
Sep 10, 2014:
- 2:07 PM Changeset [2651] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 1:57 PM Changeset [2650] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 12:33 PM Changeset [2649] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 9:58 AM Changeset [2648] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 8:58 AM Changeset [2647] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 8:55 AM Changeset [2646] by
- References #571: Update Reggie to new scripting pattern (first step) …
- 8:18 AM Changeset [2645] by
- References #631: Add data check to the confirm sequencing ended wizard …
Sep 9, 2014:
- 4:03 PM net.sf.basedb.yubikey/install edited by
- The yubikey-extended-properties.xml is part of the release since … (diff)
- 1:43 PM Changeset [2644] by
- References #595: Confirm alignment The 'View remote files' dialog now …
- 1:33 PM Changeset [2643] by
- References #631: Add data check to the confirm sequencing ended wizard …
- 1:28 PM Changeset [2642] by
- References #631: Add data check to the confirm sequencing ended wizard …
- 11:38 AM Changeset [2641] by
- References #631: Add data check to the confirm sequencing ended wizard …
- 11:31 AM Ticket #631 (Add data check to the confirm sequencing ended wizard) created by
-
Picard has a tool called
CheckIlluminaDirectorywhich can be used …
Sep 8, 2014:
- 11:00 AM Changeset [2640] by
- References #548: Register Demux and Merge as ended Added an option to …
- 10:42 AM Changeset [2639] by
- References #571: Update Reggie to new scripting pattern (first step) …
Sep 4, 2014:
- 11:14 AM Ticket #630 (Start cufflinks) created by
- The wizard is started after successfully aligning data. In the first …
- 11:11 AM Ticket #629 (Use annotations on protocols in the demux and mask/align step to set ...) created by
- Some program parameters for picard, bowtie, tophat, etc. are currently …
- 11:00 AM Changeset [2638] by
- References #595: Confirm alignment Do not show the 'delete items …
- 9:26 AM Changeset [2637] by
- References #571. Forgot to remove a few script lines.
- 9:24 AM Changeset [2636] by
- References #571 and #547 and #548. The confirm demux wizard has been …
- 8:37 AM Changeset [2635] by
- References #593 and #595. Changes in [2633] that ensure job folders …
Sep 3, 2014:
- 1:42 PM Ticket #626 (NullPointerException when registering follow-up blood) closed by
- fixed: (In [2634]) Fixes #626: NullPointerException?? when registering …
- 1:39 PM Changeset [2634] by
- Fixes #636: NullPointerException? when registering follow-up blood …
- 1:10 PM Changeset [2633] by
- References #593 and #595. Added "delete items created by failed jobs" …
- 9:26 AM Ticket #628 (Add right-click menu to create pools wizard) created by
- Right-clicking on a well in the lib plate should display a menu with …
- 9:20 AM net.sf.basedb.reggie edited by
- Relesed Reggie 2.16-beta-3 (diff)
- 9:18 AM Changeset [2632] by
- Tagging Reggie 2.16-beta-3
- 9:17 AM Changeset [2631] by
- Preparing to release Reggie 2.16-beta-3
- 9:02 AM Changeset [2630] by
- References #593: Start masking and alignment Save aligned data from …
Sep 2, 2014:
- 4:08 PM Ticket #627 (Improve error visualization in wizards) closed by
- fixed: (In [2629]) Fixes #627: Improve error visualization in wizards Added …
- 4:08 PM Changeset [2629] by
- Fixes #627: Improve error visualization in wizards Added a CSS …
- 4:05 PM Ticket #627 (Improve error visualization in wizards) created by
- Sometimes it can be a bit hard to spot the error icon next to an input …
- 2:12 PM Changeset [2628] by
- References #547: Start Demux and Merge Display warning if the …
- 12:05 PM Changeset [2627] by
- References #547: Start Demux and Merge Sequencing runs are sorted by …
- 11:43 AM Changeset [2626] by
- References #547 and #593. Use the "Send message when plugin completes" …
- 11:39 AM Changeset [2625] by
- References #593: Start masking and alignment Add -f flag to 'mv' …
- 11:01 AM Changeset [2624] by
- References #571: Update Reggie to new scripting pattern Bad tag in …
- 11:01 AM Changeset [2623] by
- References #571: Update Reggie to new scripting pattern Changes to …
- 11:00 AM Changeset [2622] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 9:17 AM Ticket #626 (NullPointerException when registering follow-up blood) created by
- This seems to happing if a CASE is linked to at least two SPECIMENT or …
Sep 1, 2014:
- 3:52 PM Changeset [2621] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 2:55 PM Changeset [2620] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 1:57 PM Changeset [2619] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 1:45 PM Changeset [2618] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 12:43 PM Changeset [2617] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 12:42 PM Changeset [2616] by
- References #571: Update Reggie to new scripting pattern Found a bug …
- 8:06 AM Changeset [2615] by
- References #571: Update Reggie to new scripting pattern Found some …
Aug 29, 2014:
- 3:36 PM Ticket #625 (Prevent registration of patients with identical data) closed by
- fixed: (In [2614]) Fixes #625: Prevent registration of patients with …
- 3:36 PM Changeset [2614] by
- Fixes #625: Prevent registration of patients with identical data When …
- 2:15 PM Changeset [2613] by
- References #625: Prevent registration of patients with identical data …
- 12:20 PM Ticket #625 (Prevent registration of patients with identical data) created by
- The scenario is that two different users are registering patient …
- 11:34 AM Changeset [2612] by
- References #571: Update Reggie to new scripting pattern Fixed the …
- 11:01 AM Changeset [2611] by
- References #571: Update Reggie to new scripting pattern Updated the …
Aug 28, 2014:
- 4:02 PM Changeset [2610] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 3:29 PM Changeset [2609] by
- References #571: Update Reggie to new scripting pattern New file part …
- 3:29 PM Changeset [2608] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 8:40 AM Ticket #624 (Improve performance of the "Missing data" export wizard) closed by
- fixed: (In [2607]) Fixes #624: Improve performance of the "Missing data" …
- 8:40 AM Changeset [2607] by
- Fixes #624: Improve performance of the "Missing data" export wizard
Aug 27, 2014:
- 3:48 PM Ticket #624 (Improve performance of the "Missing data" export wizard) created by
- Similar to #623, but a bit more complicated since it checks data at …
- 3:29 PM Changeset [2606] by
- References #623: Improve performance of the "Missing consent" export …
- 3:27 PM Ticket #623 (Improve performance of the "Missing consent" export wizard) closed by
- fixed: (In [2605]) Fixes #623: Improve performance of the "Missing consent" …
- 3:27 PM Changeset [2605] by
- Fixes #623: Improve performance of the "Missing consent" export wizard
- 2:58 PM Ticket #623 (Improve performance of the "Missing consent" export wizard) created by
- This takes a very long time. The main reason seems to be that the …
- 2:56 PM Changeset [2604] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 2:17 PM Changeset [2603] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 12:47 PM Changeset [2602] by
- References #571: Update Reggie to new scripting pattern Updated the …
- 11:37 AM Ticket #622 (Updating a blood sample for a case with follow-up blood samples fails) closed by
- fixed: (In [2601]) Fixes #622: Updating a blood sample for a case with …
- 11:37 AM Changeset [2601] by
- Fixes #622: Updating a blood sample for a case with follow-up blood …
- 11:30 AM Ticket #622 (Updating a blood sample for a case with follow-up blood samples fails) created by
- After entering the case number the wizard display the following error …
Aug 26, 2014:
- 2:19 PM Ticket #621 (Second specimen tube is not linked if registered before pathology referral) closed by
- fixed: (In [2600]) Fixes #621: Second specimen tube is not linked if …
- 2:19 PM Changeset [2600] by
- Fixes #621: Second specimen tube is not linked if registered before …
- 1:58 PM Ticket #621 (Second specimen tube is not linked if registered before pathology referral) created by
- This may be a rather exotic case: 1. Register a core-biopsy specimen …
Aug 25, 2014:
- 12:28 PM Changeset [2599] by
- References #571: Update Reggie to new scripting pattern Started to …
Aug 22, 2014:
- 11:23 AM Ticket #620 (Tell browsers not to cache AJAX response data) closed by
- fixed: (In [2598]) Fixes #620: Tell browsers not to cache AJAX response data
- 11:23 AM Changeset [2598] by
- Fixes #620: Tell browsers not to cache AJAX response data
- 11:22 AM Ticket #620 (Tell browsers not to cache AJAX response data) created by
- Not usually a problem with Firefox, but in case someone tries to use …
Aug 20, 2014:
- 9:23 AM net.sf.basedb.reggie edited by
- Revoked Reggie 2.16-beta-2 (diff)
- 9:21 AM Changeset [2597] by
- Tagging Reggie 2.16-beta-2
- 9:21 AM Changeset [2596] by
- Preparing to release Reggie 2.16-beta-2
- 9:18 AM Changeset [2595] by
- References #578: Move to BASE 3.3 Remove stuff not needed anymore. …
Aug 19, 2014:
- 2:29 PM Ticket #618 (Specimen tube item is registered with incorrect name) closed by
- fixed: (In [2594]) Fixes #618: Specimen tube item is registered with …
- 2:29 PM Changeset [2594] by
- Fixes #618: Specimen tube item is registered with incorrect name Set …
- 2:03 PM net.sf.basedb.reggie edited by
- Revoked Reggie 2.16-beta-1 (diff)
- 2:01 PM Ticket #618 (Specimen tube item is registered with incorrect name) reopened by
- The fix made actually made things worse than it was before... The …
- 11:22 AM Changeset [2593] by
- Resetting debug flags.
- 11:18 AM Ticket #619 (Switching between cases will not always work) closed by
- fixed: (In [2592]) Fixes #619: Switching between cases will not always work …
- 11:18 AM Changeset [2592] by
- Fixes #619: Switching between cases will not always work Before using …
- 10:47 AM Ticket #619 (Switching between cases will not always work) created by
- Consider a patient with multiple specimen with different case-ids that …
- 9:49 AM net.sf.basedb.reggie/notes216 edited by
- Changing Picard link (diff)
- 8:32 AM net.sf.basedb.reggie edited by
- Released Reggie 2.16-beta-1 (diff)
- 8:30 AM Changeset [2591] by
- Tagging Reggie 2.16-beta-1
- 8:28 AM Changeset [2590] by
- Preparing to release Reggie 2.16-beta-1
Aug 18, 2014:
- 2:52 PM Ticket #614 (Improve error handling when executing jobs on the cluster) closed by
- fixed
- 2:48 PM Ticket #595 (Confirm alignment) closed by
- fixed
- 2:48 PM Ticket #593 (Start masking and alignment) closed by
- fixed
- 2:48 PM Ticket #548 (Register Demux and Merge as ended) closed by
- fixed
- 2:47 PM Ticket #547 (Start Demux and Merge) closed by
- fixed
- 2:46 PM Ticket #533 (Add secondary analysis section to Reggie) closed by
- fixed
- 2:44 PM Ticket #578 (Move to BASE 3.3) closed by
- fixed
- 2:43 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) closed by
- fixed
- 1:55 PM Milestone FTP Server v1.4 completed
- For more information see the [wiki:net.sf.basedb.ftp FTP Server …
- 1:53 PM PluginDownload edited by
- Released Ftp server 1.4 (diff)
- 1:52 PM net.sf.basedb.ftp edited by
- Released Ftp server 1.4 (diff)
- 1:50 PM Changeset [2589] by
- Preparing for future relase of FTP server 1.5
- 1:50 PM Changeset [2588] by
- Tagging FTP server 1.4
- 1:49 PM Changeset [2587] by
- Preparing to release FTP server 1.4
- 1:47 PM Milestone External files support 1.1 completed
- An extension package containing support for additional protocols to …
- 1:47 PM PluginDownload edited by
- Released Xfiles 1.1 (diff)
- 1:45 PM net.sf.basedb.xfiles edited by
- Released Xfiles 1.1 (diff)
- 1:44 PM Changeset [2586] by
- Preparing for future relase of Xfiles 1.2
- 1:43 PM Changeset [2585] by
- Tagging Xfiles 1.1
- 1:43 PM Changeset [2584] by
- Preparing to release Xfiles 1.1
- 11:30 AM Ticket #617 (Re-use server connections within a transaction) closed by
- fixed
- 11:11 AM Changeset [2583] by
- References #617: Re-use server connections within a transaction Fixes …
- 11:09 AM net.sf.basedb.reggie/notes216 edited by
- More update notes for Reggie 2.16 (diff)
Aug 15, 2014:
- 2:56 PM Changeset [2582] by
- References #547 and #593. Use temp folder provided by the grid …
- 1:19 PM Changeset [2581] by
- References #547: Start Demux and Merge Use different number of tiles …
- 9:38 AM Changeset [2580] by
- References #593: Start masking and alignment Use temporary filter in …
- 9:36 AM Changeset [2579] by
- References #547: Start Demux and Merge Use temporary filter in …
- 9:34 AM Changeset [2578] by
- References #595: Confirm alignment Linkf generated files with the …
- 8:02 AM Changeset [2577] by
- References #548: Register Demux and Merge as ended To avoid too many …
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