Timeline
Aug 20, 2014:
- 9:23 AM net.sf.basedb.reggie edited by
- Revoked Reggie 2.16-beta-2 (diff)
- 9:21 AM Changeset [2597] by
- Tagging Reggie 2.16-beta-2
- 9:21 AM Changeset [2596] by
- Preparing to release Reggie 2.16-beta-2
- 9:18 AM Ticket #578 (Move to BASE 3.3) updated by
- (In [2595]) References #578: Move to BASE 3.3 Remove stuff not needed …
- 9:18 AM Changeset [2595] by
- References #578: Move to BASE 3.3 Remove stuff not needed anymore. …
Aug 19, 2014:
- 2:29 PM Ticket #618 (Specimen tube item is registered with incorrect name) closed by
- fixed: (In [2594]) Fixes #618: Specimen tube item is registered with …
- 2:29 PM Changeset [2594] by
- Fixes #618: Specimen tube item is registered with incorrect name Set …
- 2:03 PM net.sf.basedb.reggie edited by
- Revoked Reggie 2.16-beta-1 (diff)
- 2:01 PM Ticket #618 (Specimen tube item is registered with incorrect name) reopened by
- The fix made actually made things worse than it was before... The …
- 11:22 AM Changeset [2593] by
- Resetting debug flags.
- 11:18 AM Ticket #619 (Switching between cases will not always work) closed by
- fixed: (In [2592]) Fixes #619: Switching between cases will not always work …
- 11:18 AM Changeset [2592] by
- Fixes #619: Switching between cases will not always work Before using …
- 10:50 AM Ticket #619 (Switching between cases will not always work) updated by
- After investigating this it seems like #534 which introduced support …
- 10:47 AM Ticket #619 (Switching between cases will not always work) created by
- Consider a patient with multiple specimen with different case-ids that …
- 9:49 AM net.sf.basedb.reggie/notes216 edited by
- Changing Picard link (diff)
- 8:32 AM net.sf.basedb.reggie edited by
- Released Reggie 2.16-beta-1 (diff)
- 8:30 AM Changeset [2591] by
- Tagging Reggie 2.16-beta-1
- 8:28 AM Changeset [2590] by
- Preparing to release Reggie 2.16-beta-1
Aug 18, 2014:
- 2:52 PM Ticket #614 (Improve error handling when executing jobs on the cluster) closed by
- fixed
- 2:48 PM Ticket #595 (Confirm alignment) closed by
- fixed
- 2:48 PM Ticket #593 (Start masking and alignment) closed by
- fixed
- 2:48 PM Ticket #548 (Register Demux and Merge as ended) closed by
- fixed
- 2:47 PM Ticket #547 (Start Demux and Merge) closed by
- fixed
- 2:46 PM Ticket #533 (Add secondary analysis section to Reggie) closed by
- fixed
- 2:46 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
-
Description changed
- 2:44 PM Ticket #578 (Move to BASE 3.3) closed by
- fixed
- 2:43 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) closed by
- fixed
- 1:55 PM Milestone FTP Server v1.4 completed
- For more information see the [wiki:net.sf.basedb.ftp FTP Server …
- 1:53 PM PluginDownload edited by
- Released Ftp server 1.4 (diff)
- 1:52 PM net.sf.basedb.ftp edited by
- Released Ftp server 1.4 (diff)
- 1:50 PM Changeset [2589] by
- Preparing for future relase of FTP server 1.5
- 1:50 PM Changeset [2588] by
- Tagging FTP server 1.4
- 1:49 PM Changeset [2587] by
- Preparing to release FTP server 1.4
- 1:47 PM Milestone External files support 1.1 completed
- An extension package containing support for additional protocols to …
- 1:47 PM PluginDownload edited by
- Released Xfiles 1.1 (diff)
- 1:45 PM net.sf.basedb.xfiles edited by
- Released Xfiles 1.1 (diff)
- 1:44 PM Changeset [2586] by
- Preparing for future relase of Xfiles 1.2
- 1:43 PM Changeset [2585] by
- Tagging Xfiles 1.1
- 1:43 PM Changeset [2584] by
- Preparing to release Xfiles 1.1
- 11:30 AM Ticket #617 (Re-use server connections within a transaction) closed by
- fixed
- 11:11 AM Ticket #617 (Re-use server connections within a transaction) updated by
- (In [2583]) References #617: Re-use server connections within a …
- 11:11 AM Changeset [2583] by
- References #617: Re-use server connections within a transaction Fixes …
- 11:09 AM net.sf.basedb.reggie/notes216 edited by
- More update notes for Reggie 2.16 (diff)
Aug 15, 2014:
- 2:56 PM Tickets #547,593 batch updated by
- (In [2582]) References #547 and #593. Use temp folder provided by the …
- 2:56 PM Changeset [2582] by
- References #547 and #593. Use temp folder provided by the grid …
- 1:19 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2581]) References #547: Start Demux and Merge Use different …
- 1:19 PM Changeset [2581] by
- References #547: Start Demux and Merge Use different number of tiles …
- 9:38 AM Ticket #593 (Start masking and alignment) updated by
- (In [2580]) References #593: Start masking and alignment Use …
- 9:38 AM Changeset [2580] by
- References #593: Start masking and alignment Use temporary filter in …
- 9:36 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2579]) References #547: Start Demux and Merge Use temporary …
- 9:36 AM Changeset [2579] by
- References #547: Start Demux and Merge Use temporary filter in …
- 9:34 AM Ticket #595 (Confirm alignment) updated by
- (In [2578]) References #595: Confirm alignment Linkf generated files …
- 9:34 AM Changeset [2578] by
- References #595: Confirm alignment Linkf generated files with the …
- 8:02 AM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2577]) References #548: Register Demux and Merge as ended To …
- 8:02 AM Changeset [2577] by
- References #548: Register Demux and Merge as ended To avoid too many …
Aug 14, 2014:
- 3:48 PM Ticket #618 (Specimen tube item is registered with incorrect name) closed by
- fixed: (In [2576]) Fixes #618: Specimen tube item is registered with …
- 3:48 PM Changeset [2576] by
- Fixes #618: Specimen tube item is registered with incorrect name
- 3:47 PM Ticket #618 (Specimen tube item is registered with incorrect name) updated by
-
Summary changed
- 3:45 PM Ticket #618 (Specimen tube item is registered with incorrect name) created by
- In rare cases a specimen tube can be named incorrectly: 1. Register …
- 1:29 PM Ticket #595 (Confirm alignment) updated by
- (In [2575]) References #595: Confirm alignment Do not need to open 2 …
- 1:29 PM Changeset [2575] by
- References #595: Confirm alignment Do not need to open 2 DbControl:s.
- 9:41 AM Ticket #595 (Confirm alignment) updated by
- (In [2574]) References #595: Confirm alignment Better progress …
- 9:41 AM Changeset [2574] by
- References #595: Confirm alignment Better progress reporting during …
- 8:54 AM Ticket #595 (Confirm alignment) updated by
- (In [2573]) References #595: Confirm alignment Changes related to …
- 8:54 AM Changeset [2573] by
- References #595: Confirm alignment Changes related to [2566] due to …
Aug 13, 2014:
- 3:51 PM Ticket #617 (Re-use server connections within a transaction) updated by
- (In [2572]) References #617: Re-use server connections within a …
- 3:51 PM Changeset [2572] by
- References #617: Re-use server connections within a transaction …
- 11:31 AM Ticket #617 (Re-use server connections within a transaction) updated by
- (In [2571]) References #617: Re-use server connections within a …
- 11:31 AM Changeset [2571] by
- References #617: Re-use server connections within a transaction …
- 11:02 AM Ticket #617 (Re-use server connections within a transaction) updated by
- This turned out to be a bit more complicated than expected. The idea …
Aug 12, 2014:
- 8:33 AM Ticket #617 (Re-use server connections within a transaction) created by
- The current implementation opens a new connection for each remote file …
Aug 11, 2014:
- 2:43 PM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2570]) References #548: Register Demux and Merge as ended …
- 2:43 PM Changeset [2570] by
- References #548: Register Demux and Merge as ended Register FASTQ …
- 2:36 PM Ticket #616 (External files with a file server can't be downloaded) closed by
- fixed: (In [2569]) Fixes #616: External files with a file server can't be …
- 2:36 PM Changeset [2569] by
- Fixes #616: External files with a file server can't be downloaded
- 2:17 PM Ticket #616 (External files with a file server can't be downloaded) created by
- There is a bug in the FTP server when trying to download an external …
- 10:55 AM Ticket #593 (Start masking and alignment) updated by
- (In [2568]) References #593: Start masking and alignment Changes …
- 10:55 AM Changeset [2568] by
- References #593: Start masking and alignment Changes related to …
- 10:48 AM Changeset [2567] by
- Removing scripts that are no longer used by reggie.
- 10:34 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2566]) References #547: Start Demux and Merge Specify project …
- 10:34 AM Changeset [2566] by
- References #547: Start Demux and Merge Specify project name in the …
- 8:36 AM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2565]) References #533: Add secondary analysis section to Reggie …
- 8:36 AM Changeset [2565] by
- References #533: Add secondary analysis section to Reggie Installing …
Aug 8, 2014:
- 12:51 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2564]) References #533: Add secondary analysis section to Reggie …
- 12:51 PM Changeset [2564] by
- References #533: Add secondary analysis section to Reggie Forgot this …
- 11:58 AM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2563]) References #533: Add secondary analysis section to Reggie …
- 11:58 AM Changeset [2563] by
- References #533: Add secondary analysis section to Reggie Use …
- 8:01 AM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2562]) References #533: Add secondary analysis section to Reggie …
- 8:01 AM Changeset [2562] by
- References #533: Add secondary analysis section to Reggie Installing …
Aug 7, 2014:
- 3:33 PM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2561]) References #548: Register Demux and Merge as ended …
- 3:33 PM Changeset [2561] by
- References #548: Register Demux and Merge as ended checkMd5 …
Aug 6, 2014:
- 2:11 PM Tickets #547,593 batch updated by
- (In [2560]) References #547 and #593. Do not use more threads than the …
- 2:11 PM Changeset [2560] by
- References #547 and #593. Do not use more threads than the number of …
- 12:55 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- (In [2559]) References #614: Improve error handling when executing …
- 12:55 PM Changeset [2559] by
- References #614: Improve error handling when executing jobs on the …
- 12:50 PM Changeset [2558] by
- Forgot to execute the last samtools command
Aug 5, 2014:
- 3:59 PM Changeset [2557] by
- Added 'alignment_statisics.sh' which replaces the …
- 3:58 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- (In [2556]) References #614: Improve error handling when executing …
- 3:58 PM Changeset [2556] by
- References #614: Improve error handling when executing jobs on the …
- 2:52 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- samtools Seems like only error messages go to stderr and exit …
- 2:39 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- (In [2555]) References #614: Improve error handling when executing …
- 2:39 PM Changeset [2555] by
- References #614: Improve error handling when executing jobs on the …
- 11:19 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- (In [2554]) References #614: Improve error handling when executing …
- 11:19 AM Changeset [2554] by
- References #614: Improve error handling when executing jobs on the …
- 9:39 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- (In [2553]) References #614: Improve error handling when executing …
- 9:39 AM Changeset [2553] by
- References #614: Improve error handling when executing jobs on the …
- 8:52 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- tophat All interesting output is going to files in a folder …
- 8:12 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by
- (In [2552]) References #614: Improve error handling when executing …
- 8:12 AM Changeset [2552] by
- References #614: Improve error handling when executing jobs on the …
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