Timeline



Aug 14, 2014:

3:48 PM Ticket #618 (Specimen tube item is registered with incorrect name) closed by Nicklas Nordborg
fixed: (In [2576]) Fixes #618: Specimen tube item is registered with …
3:48 PM Changeset [2576] by Nicklas Nordborg
Fixes #618: Specimen tube item is registered with incorrect name
3:47 PM Ticket #618 (Specimen tube item is registered with incorrect name) updated by Nicklas Nordborg
Summary changed
3:45 PM Ticket #618 (Specimen tube item is registered with incorrect name) created by Nicklas Nordborg
In rare cases a specimen tube can be named incorrectly: 1. Register …
1:29 PM Ticket #595 (Confirm alignment) updated by Nicklas Nordborg
(In [2575]) References #595: Confirm alignment Do not need to open 2 …
1:29 PM Changeset [2575] by Nicklas Nordborg
References #595: Confirm alignment Do not need to open 2 DbControl:s.
9:41 AM Ticket #595 (Confirm alignment) updated by Nicklas Nordborg
(In [2574]) References #595: Confirm alignment Better progress …
9:41 AM Changeset [2574] by Nicklas Nordborg
References #595: Confirm alignment Better progress reporting during …
8:54 AM Ticket #595 (Confirm alignment) updated by Nicklas Nordborg
(In [2573]) References #595: Confirm alignment Changes related to …
8:54 AM Changeset [2573] by Nicklas Nordborg
References #595: Confirm alignment Changes related to [2566] due to …

Aug 13, 2014:

3:51 PM Ticket #617 (Re-use server connections within a transaction) updated by Nicklas Nordborg
(In [2572]) References #617: Re-use server connections within a …
3:51 PM Changeset [2572] by Nicklas Nordborg
References #617: Re-use server connections within a transaction …
11:31 AM Ticket #617 (Re-use server connections within a transaction) updated by Nicklas Nordborg
(In [2571]) References #617: Re-use server connections within a …
11:31 AM Changeset [2571] by Nicklas Nordborg
References #617: Re-use server connections within a transaction …
11:02 AM Ticket #617 (Re-use server connections within a transaction) updated by Nicklas Nordborg
This turned out to be a bit more complicated than expected. The idea …

Aug 12, 2014:

8:33 AM Ticket #617 (Re-use server connections within a transaction) created by Nicklas Nordborg
The current implementation opens a new connection for each remote file …

Aug 11, 2014:

2:43 PM Ticket #548 (Register Demux and Merge as ended) updated by Nicklas Nordborg
(In [2570]) References #548: Register Demux and Merge as ended …
2:43 PM Changeset [2570] by Nicklas Nordborg
References #548: Register Demux and Merge as ended Register FASTQ …
2:36 PM Ticket #616 (External files with a file server can't be downloaded) closed by Nicklas Nordborg
fixed: (In [2569]) Fixes #616: External files with a file server can't be …
2:36 PM Changeset [2569] by Nicklas Nordborg
Fixes #616: External files with a file server can't be downloaded
2:17 PM Ticket #616 (External files with a file server can't be downloaded) created by Nicklas Nordborg
There is a bug in the FTP server when trying to download an external …
10:55 AM Ticket #593 (Start masking and alignment) updated by Nicklas Nordborg
(In [2568]) References #593: Start masking and alignment Changes …
10:55 AM Changeset [2568] by Nicklas Nordborg
References #593: Start masking and alignment Changes related to …
10:48 AM Changeset [2567] by Nicklas Nordborg
Removing scripts that are no longer used by reggie.
10:34 AM Ticket #547 (Start Demux and Merge) updated by Nicklas Nordborg
(In [2566]) References #547: Start Demux and Merge Specify project …
10:34 AM Changeset [2566] by Nicklas Nordborg
References #547: Start Demux and Merge Specify project name in the …
8:36 AM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2565]) References #533: Add secondary analysis section to Reggie …
8:36 AM Changeset [2565] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Installing …

Aug 8, 2014:

12:51 PM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2564]) References #533: Add secondary analysis section to Reggie …
12:51 PM Changeset [2564] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Forgot this …
11:58 AM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2563]) References #533: Add secondary analysis section to Reggie …
11:58 AM Changeset [2563] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Use …
8:01 AM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2562]) References #533: Add secondary analysis section to Reggie …
8:01 AM Changeset [2562] by Nicklas Nordborg
References #533: Add secondary analysis section to Reggie Installing …

Aug 7, 2014:

3:33 PM Ticket #548 (Register Demux and Merge as ended) updated by Nicklas Nordborg
(In [2561]) References #548: Register Demux and Merge as ended …
3:33 PM Changeset [2561] by Nicklas Nordborg
References #548: Register Demux and Merge as ended checkMd5 …

Aug 6, 2014:

2:11 PM Tickets #547,​593 batch updated by Nicklas Nordborg
(In [2560]) References #547 and #593. Do not use more threads than the …
2:11 PM Changeset [2560] by Nicklas Nordborg
References #547 and #593. Do not use more threads than the number of …
12:55 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2559]) References #614: Improve error handling when executing …
12:55 PM Changeset [2559] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
12:50 PM Changeset [2558] by Nicklas Nordborg
Forgot to execute the last samtools command

Aug 5, 2014:

3:59 PM Changeset [2557] by Nicklas Nordborg
Added 'alignment_statisics.sh' which replaces the …
3:58 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2556]) References #614: Improve error handling when executing …
3:58 PM Changeset [2556] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
2:52 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
samtools Seems like only error messages go to stderr and exit …
2:39 PM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2555]) References #614: Improve error handling when executing …
2:39 PM Changeset [2555] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
11:19 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2554]) References #614: Improve error handling when executing …
11:19 AM Changeset [2554] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
9:39 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2553]) References #614: Improve error handling when executing …
9:39 AM Changeset [2553] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
8:52 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
tophat All interesting output is going to files in a folder …
8:12 AM Ticket #614 (Improve error handling when executing jobs on the cluster) updated by Nicklas Nordborg
(In [2552]) References #614: Improve error handling when executing …
8:12 AM Changeset [2552] by Nicklas Nordborg
References #614: Improve error handling when executing jobs on the …
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