Timeline
May 16, 2014:
- 4:39 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2433]) Refs #592. Lab environment extension updated in servlet to …
- 4:39 PM Changeset [2433] by
- Refs #592. Lab environment extension updated in servlet to reduce the …
- 4:31 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2432]) Refs #592. Lab environment extension updated with first …
- 4:31 PM Changeset [2432] by
- Refs #592. Lab environment extension updated with first version of …
- 12:31 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2431]) Refs #592. Lab environment extension updated in servlet, …
- 12:31 PM Changeset [2431] by
- Refs #592. Lab environment extension updated in servlet, in order to …
- 8:12 AM Changeset [2430] by
- Switched from illumina2bam_wrapper to picard for demultiplexing. …
- 8:10 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2429]) References #547: Start Demux and Merge Switched from …
- 8:10 AM Changeset [2429] by
- References #547: Start Demux and Merge Switched from …
- 7:28 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2428]) Refs #592. Lab environment extension updated in header …
- 7:28 AM Changeset [2428] by
- Refs #592. Lab environment extension updated in header title for …
May 15, 2014:
- 4:45 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2427]) Refs #592. Lab environment extension updated in layout of …
- 4:45 PM Changeset [2427] by
- Refs #592. Lab environment extension updated in layout of alarm table: …
- 12:59 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Test of alarm: * Set-up: The lab environment extension were …
- 11:30 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2426]) Refs #592. Lab environment extension updated in alarm text …
- 11:30 AM Changeset [2426] by
- Refs #592. Lab environment extension updated in alarm text layout: …
- 7:39 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2425]) Refs #592. Lab environment extension updated in alarm …
- 7:39 AM Changeset [2425] by
- Refs #592. Lab environment extension updated in alarm infra-structure …
May 14, 2014:
- 4:38 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2424]) Refs #592. Lab environment extension updated in alarm …
- 4:38 PM Changeset [2424] by
- Refs #592. Lab environment extension updated in alarm infra-structure …
- 2:23 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design update of the lab environment alarm infra-structure: 1. Alarm …
- 8:47 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2423]) Refs #592. Lab environment extension updated in header …
- 8:47 AM Changeset [2423] by
- Refs #592. Lab environment extension updated in header title for …
May 13, 2014:
- 3:40 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2422]) References #547: Start Demux and Merge Export barcode …
- 3:40 PM Changeset [2422] by
- References #547: Start Demux and Merge Export barcode files needed by …
- 2:43 PM Changeset [2421] by
- Renamed the 'filtered' step to 'masked'. See …
- 2:41 PM Tickets #533,547,548,593,595 batch updated by
- (In [2420]) References #533, #547, #548, #593, #595. Renamed …
- 2:41 PM Changeset [2420] by
-
References #533, #547, #548, #593, #595. Renamed
FilteredSequences… - 2:30 PM Ticket #593 (Start masking and alignment) updated by
-
Description changed
- 2:30 PM Ticket #593 (Start masking and alignment) updated by
-
Summary changed
- 8:37 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2419]) Refs #592. Lab environment extension updated to check …
- 8:37 AM Changeset [2419] by
- Refs #592. Lab environment extension updated to check permission to …
May 12, 2014:
- 3:58 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2418]) Refs #592. Lab environment extension updated to only use a …
- 3:58 PM Changeset [2418] by
- Refs #592. Lab environment extension updated to only use a fixed …
- 8:13 AM Ticket #595 (Confirm alignment) updated by
- (In [2417]) References #595: Confirm alignment Saved files are …
- 8:13 AM Changeset [2417] by
- References #595: Confirm alignment Saved files are attached to the …
May 9, 2014:
- 3:01 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2416]) Refs #592. Lab environment extension updated in code …
- 3:01 PM Changeset [2416] by
- Refs #592. Lab environment extension updated in code formatting: 1. …
- 2:17 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2415]) Refs #592. Lab environment extension updated with lab …
- 2:17 PM Changeset [2415] by
- Refs #592. Lab environment extension updated with lab environment …
- 2:03 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design of implementation for lab environment alarm control: 1. XML …
- 1:24 PM Ticket #593 (Start masking and alignment) updated by
- (In [2414]) References #593: Start filter and alignment Removed …
- 1:24 PM Changeset [2414] by
- References #593: Start filter and alignment Removed 'filter_' prefix …
- 1:23 PM Ticket #595 (Confirm alignment) updated by
-
Status changed
- 1:23 PM Changeset [2413] by
- Remove 'filter_' prefix in the PE_filter script.
- 12:11 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design discussion for lab environment alarm control: Configuration of …
- 9:00 AM Changeset [2412] by
- Merged Reggie 2.15.1 to trunk.
- 8:19 AM Milestone Reggie v2.15.1 completed
- Bug fixes for Reggie 2.15 and changes for NextSeq support. See …
- 8:17 AM net.sf.basedb.reggie edited by
- (diff)
- 8:17 AM net.sf.basedb.reggie/notes215 edited by
- (diff)
- 8:16 AM net.sf.basedb.reggie edited by
- (diff)
- 8:14 AM net.sf.basedb.reggie/notes2151 created by
- 8:08 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15.1 (diff)
- 8:06 AM Ticket #594 (Changes for NextSeq support) closed by
- fixed
- 8:05 AM Changeset [2411] by
- Tagging Reggie 2.15.1
- 8:04 AM Changeset [2410] by
- Preparing to release Reggie 2.15.1
- 8:02 AM Ticket #594 (Changes for NextSeq support) updated by
- (In [2409]) References #594: Changes for NextSeq support Hide 'B' …
- 8:02 AM Changeset [2409] by
- References #594: Changes for NextSeq support Hide 'B' position when …
May 8, 2014:
- 3:49 PM Ticket #594 (Changes for NextSeq support) updated by
- (In [2408]) References #594: Changes for NextSeq support * Added …
- 3:49 PM Changeset [2408] by
- References #594: Changes for NextSeq support * Added 'Lanes/flow …
- 2:30 PM Ticket #594 (Changes for NextSeq support) updated by
- It has also been confirmed that data output is for 4 lanes, even …
- 2:25 PM Ticket #594 (Changes for NextSeq support) updated by
-
Status changed
TheRunParameters.xmlfile from the NextSeq is not compatible with … - 10:56 AM Ticket #595 (Confirm alignment) updated by
- (In [2407]) References #595: Confirm alignment Extended the file …
- 10:56 AM Changeset [2407] by
- References #595: Confirm alignment Extended the file listing feature …
May 7, 2014:
- 12:39 PM Ticket #595 (Confirm alignment) updated by
- (In [2406]) References #595: Confirm alignment Adding a function for …
- 12:39 PM Changeset [2406] by
- References #595: Confirm alignment Adding a function for listing and …
- 8:42 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2405]) Refs #592. Lab environment extension updated in class/file …
- 8:42 AM Changeset [2405] by
- Refs #592. Lab environment extension updated in class/file …
May 6, 2014:
- 1:59 PM Ticket #595 (Confirm alignment) updated by
- (In [2404]) References #595: Confirm alignment First version of the …
- 1:59 PM Changeset [2404] by
- References #595: Confirm alignment First version of the wizard. It …
- 12:05 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2403]) Refs #592. Lab environment extension updated in class/file …
- 12:05 PM Changeset [2403] by
- Refs #592. Lab environment extension updated in class/file …
- 11:55 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2402]) Refs #592. Lab environment extension updated in field name …
- 11:55 AM Changeset [2402] by
- Refs #592. Lab environment extension updated in field name and help …
- 11:37 AM Ticket #595 (Confirm alignment) created by
- Confirmation is needed after the filter/alignment step. The normal …
- 11:09 AM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2401]) Refs #592. Lab environment extension updated for …
- 11:09 AM Changeset [2401] by
- Refs #592. Lab environment extension updated for displaying graphs of …
- 11:05 AM Ticket #592 (Lab environment extension improved report routines) updated by
- Design of implementation for displaying graphs of lab environment data …
May 5, 2014:
- 4:46 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design discussion for displaying graphs of lab environment data over a …
- 1:24 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2400]) References #533: Add secondary analysis section to Reggie …
- 1:24 PM Changeset [2400] by
- References #533: Add secondary analysis section to Reggie Change …
- 1:10 PM Ticket #593 (Start masking and alignment) updated by
- (In [2399]) References #593: Start filter and alignment Running …
- 1:10 PM Changeset [2399] by
- References #593: Start filter and alignment Running …
- 11:20 AM Changeset [2398] by
- Adding statistics_tophat.sh
- 9:02 AM Ticket #593 (Start masking and alignment) updated by
- (In [2397]) References #593: Start filter and alignment Now running …
- 9:02 AM Changeset [2397] by
- References #593: Start filter and alignment Now running tophat and …
- 8:59 AM Changeset [2396] by
- Adding tophat_single.sh and sync_resyltfiles.sh scrips. tophat_single …
Apr 29, 2014:
- 3:58 PM Ticket #592 (Lab environment extension improved report routines) updated by
- (In [2395]) Refs #592. LabEnv extension updated with weekday and …
- 3:58 PM Changeset [2395] by
- Refs #592. LabEnv extension updated with weekday and daytime filter …
- 3:55 PM Ticket #592 (Lab environment extension improved report routines) updated by
- Design description of weekday and daytime filter enhancements: JSP …
- 2:48 PM Ticket #593 (Start masking and alignment) updated by
- (In [2394]) References #593: Start filter and alignment Generate a …
- 2:48 PM Changeset [2394] by
- References #593: Start filter and alignment Generate a script that is …
- 2:36 PM Changeset [2393] by
- Adding PE_filter.sh script. Changes from original script is that …
- 12:01 PM Ticket #594 (Changes for NextSeq support) created by
- A new NextSeq machine is arriving soon. There are some changes we …
Apr 28, 2014:
- 3:34 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2392]) References #533: Add secondary analysis section to Reggie …
- 3:34 PM Changeset [2392] by
- References #533: Add secondary analysis section to Reggie Added …
- 2:37 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2391]) References #547: Start Demux and Merge Disable all form …
- 2:37 PM Changeset [2391] by
- References #547: Start Demux and Merge Disable all form controls in …
- 2:36 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2390]) References #533: Add secondary analysis section to Reggie …
- 2:36 PM Changeset [2390] by
- References #533: Add secondary analysis section to Reggie Use the …
- 2:27 PM Ticket #593 (Start masking and alignment) updated by
- (In [2389]) References #593: Start filter and alignment Added 'job …
- 2:27 PM Changeset [2389] by
- References #593: Start filter and alignment Added 'job priority' and …
- 8:43 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2388]) References #547: Start Demux and Merge Storing FASTQ …
- 8:43 AM Changeset [2388] by
- References #547: Start Demux and Merge Storing FASTQ folder as …
Apr 25, 2014:
- 1:59 PM Changeset [2387] by
- Scripts used for the demux and merge steps in reggie.
- 1:47 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2386]) References #547: Start Demux and Merge Added project name …
- 1:47 PM Changeset [2386] by
- References #547: Start Demux and Merge Added project name parameter …
- 11:56 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2385]) References #547: Start Demux and Merge Debug option is …
- 11:56 AM Changeset [2385] by
- References #547: Start Demux and Merge Debug option is automatically …
- 11:50 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2384]) References #547: Start Demux and Merge For now, always …
- 11:50 AM Changeset [2384] by
- References #547: Start Demux and Merge For now, always use tmp folder …
- 10:56 AM Changeset [2383] by
- Creating trunk and tags folder for the pipeline project.
- 10:55 AM Changeset [2382] by
- Creating root folder for the 'pipeline' scripts.
- 10:55 AM Changeset [2381] by
- Adding folder for other projects.
- 10:54 AM Changeset [2380] by
- Created in the wrong location
- 10:54 AM Changeset [2379] by
- Adding folder for other projects.
- 10:52 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2378]) References #547: Start Demux and Merge Added 'priority' …
- 10:52 AM Changeset [2378] by
- References #547: Start Demux and Merge Added 'priority' option to the …
Apr 24, 2014:
- 3:40 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2377]) References #547: Start Demux and Merge Added 'debug' …
- 3:40 PM Changeset [2377] by
- References #547: Start Demux and Merge Added 'debug' option to the wizard.
- 12:58 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
- (In [2376]) References #533: Add secondary analysis section to Reggie …
- 12:58 PM Changeset [2376] by
- References #533: Add secondary analysis section to Reggie Use 'x' …
- 12:48 PM Ticket #593 (Start masking and alignment) updated by
- (In [2375]) References #593: Start filter and alignment Started to …
- 12:48 PM Changeset [2375] by
- References #593: Start filter and alignment Started to implement this …
- 12:46 PM Ticket #593 (Start masking and alignment) updated by
-
Status changed
Apr 23, 2014:
- 3:39 PM Ticket #533 (Add secondary analysis section to Reggie) updated by
-
Description changed
- 3:39 PM Ticket #593 (Start masking and alignment) created by
- Part of #533. The wizard is started after successfully demultiplexing …
- 2:23 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) updated by
- (In [2374]) References #571: Update Reggie to new scripting pattern …
- 2:23 PM Changeset [2374] by
- References #571: Update Reggie to new scripting pattern Fixed for …
- 12:32 PM Ticket #547 (Start Demux and Merge) updated by
- (In [2373]) References #547: Start Demux and Merge Summarize number …
- 12:32 PM Changeset [2373] by
- References #547: Start Demux and Merge Summarize number of …
- 10:57 AM Ticket #547 (Start Demux and Merge) updated by
- (In [2372]) References #547: Start Demux and Merge Better error …
- 10:57 AM Changeset [2372] by
- References #547: Start Demux and Merge Better error handling when …
- 7:50 AM Ticket #560 (Use annotations on Histology work list to indicate progress) closed by
- fixed: (In [2371]) Fixes #560: Use annotations on Histology work list to …
- 7:50 AM Changeset [2371] by
- Fixes #560: Use annotations on Histology work list to indicate …
- 7:46 AM Ticket #592 (Lab environment extension improved report routines) updated by
- Proposed improvements of filters for selecting data: The LabEnv …
Apr 22, 2014:
- 3:25 PM Ticket #560 (Use annotations on Histology work list to indicate progress) updated by
-
Status changed
- 2:09 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) updated by
- (In [2370]) References #571: Update Reggie to new scripting pattern …
- 2:09 PM Changeset [2370] by
- References #571: Update Reggie to new scripting pattern Fixed on the …
- 9:47 AM Ticket #571 (Update Reggie to new scripting pattern (first step)) updated by
- (In [2369]) References #571: Update Reggie to new scripting pattern …
- 9:47 AM Changeset [2369] by
- References #571: Update Reggie to new scripting pattern Fixed on the …
Apr 17, 2014:
- 12:25 PM Ticket #579 (Store serial number of sequencers as annotations on hardware items) closed by
- fixed: (In [2368]) Fixes #579: Store serial number of sequencers as …
- 12:24 PM Changeset [2368] by
- Fixes #579: Store serial number of sequencers as annotations on …
- 11:12 AM Ticket #579 (Store serial number of sequencers as annotations on hardware items) updated by
-
Status changed
- 11:12 AM Ticket #548 (Register Demux and Merge as ended) updated by
- (In [2367]) References #548: Register Demux and Merge as ended Submit …
- 11:12 AM Changeset [2367] by
- References #548: Register Demux and Merge as ended Submit …
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