Timeline
May 9, 2014:
- 3:01 PM Changeset [2416] by
- Refs #592. Lab environment extension updated in code formatting: 1. …
- 2:17 PM Changeset [2415] by
- Refs #592. Lab environment extension updated with lab environment …
- 1:24 PM Changeset [2414] by
- References #593: Start filter and alignment Removed 'filter_' prefix …
- 1:23 PM Changeset [2413] by
- Remove 'filter_' prefix in the PE_filter script.
- 9:00 AM Changeset [2412] by
- Merged Reggie 2.15.1 to trunk.
- 8:19 AM Milestone Reggie v2.15.1 completed
- Bug fixes for Reggie 2.15 and changes for NextSeq support. See …
- 8:17 AM net.sf.basedb.reggie edited by
- (diff)
- 8:17 AM net.sf.basedb.reggie/notes215 edited by
- (diff)
- 8:16 AM net.sf.basedb.reggie edited by
- (diff)
- 8:14 AM net.sf.basedb.reggie/notes2151 created by
- 8:08 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15.1 (diff)
- 8:06 AM Ticket #594 (Changes for NextSeq support) closed by
- fixed
- 8:05 AM Changeset [2411] by
- Tagging Reggie 2.15.1
- 8:04 AM Changeset [2410] by
- Preparing to release Reggie 2.15.1
- 8:02 AM Changeset [2409] by
- References #594: Changes for NextSeq? support Hide 'B' position when …
May 8, 2014:
- 3:49 PM Changeset [2408] by
- References #594: Changes for NextSeq? support * Added 'Lanes/flow …
- 10:56 AM Changeset [2407] by
- References #595: Confirm alignment Extended the file listing feature …
May 7, 2014:
- 12:39 PM Changeset [2406] by
- References #595: Confirm alignment Adding a function for listing and …
- 8:42 AM Changeset [2405] by
- Refs #592. Lab environment extension updated in class/file …
May 6, 2014:
- 1:59 PM Changeset [2404] by
- References #595: Confirm alignment First version of the wizard. It …
- 12:05 PM Changeset [2403] by
- Refs #592. Lab environment extension updated in class/file …
- 11:55 AM Changeset [2402] by
- Refs #592. Lab environment extension updated in field name and help …
- 11:37 AM Ticket #595 (Confirm alignment) created by
- Confirmation is needed after the filter/alignment step. The normal …
- 11:09 AM Changeset [2401] by
- Refs #592. Lab environment extension updated for displaying graphs of …
May 5, 2014:
- 1:24 PM Changeset [2400] by
- References #533: Add secondary analysis section to Reggie Change …
- 1:10 PM Changeset [2399] by
- References #593: Start filter and alignment Running …
- 11:20 AM Changeset [2398] by
- Adding statistics_tophat.sh
- 9:02 AM Changeset [2397] by
- References #593: Start filter and alignment Now running tophat and …
- 8:59 AM Changeset [2396] by
- Adding tophat_single.sh and sync_resyltfiles.sh scrips. tophat_single …
Apr 29, 2014:
- 3:58 PM Changeset [2395] by
- Refs #592. LabEnv extension updated with weekday and daytime filter …
- 2:48 PM Changeset [2394] by
- References #593: Start filter and alignment Generate a script that is …
- 2:36 PM Changeset [2393] by
- Adding PE_filter.sh script. Changes from original script is that …
- 12:01 PM Ticket #594 (Changes for NextSeq support) created by
- A new NextSeq machine is arriving soon. There are some changes we …
Apr 28, 2014:
- 3:34 PM Changeset [2392] by
- References #533: Add secondary analysis section to Reggie Added …
- 2:37 PM Changeset [2391] by
- References #547: Start Demux and Merge Disable all form controls in …
- 2:36 PM Changeset [2390] by
- References #533: Add secondary analysis section to Reggie Use the …
- 2:27 PM Changeset [2389] by
- References #593: Start filter and alignment Added 'job priority' and …
- 8:43 AM Changeset [2388] by
- References #547: Start Demux and Merge Storing FASTQ folder as …
Apr 25, 2014:
- 1:59 PM Changeset [2387] by
- Scripts used for the demux and merge steps in reggie.
- 1:47 PM Changeset [2386] by
- References #547: Start Demux and Merge Added project name parameter …
- 11:56 AM Changeset [2385] by
- References #547: Start Demux and Merge Debug option is automatically …
- 11:50 AM Changeset [2384] by
- References #547: Start Demux and Merge For now, always use tmp folder …
- 10:56 AM Changeset [2383] by
- Creating trunk and tags folder for the pipeline project.
- 10:55 AM Changeset [2382] by
- Creating root folder for the 'pipeline' scripts.
- 10:55 AM Changeset [2381] by
- Adding folder for other projects.
- 10:54 AM Changeset [2380] by
- Created in the wrong location
- 10:54 AM Changeset [2379] by
- Adding folder for other projects.
- 10:52 AM Changeset [2378] by
- References #547: Start Demux and Merge Added 'priority' option to the …
Apr 24, 2014:
- 3:40 PM Changeset [2377] by
- References #547: Start Demux and Merge Added 'debug' option to the wizard.
- 12:58 PM Changeset [2376] by
- References #533: Add secondary analysis section to Reggie Use 'x' …
- 12:48 PM Changeset [2375] by
- References #593: Start filter and alignment Started to implement this …
Apr 23, 2014:
- 3:39 PM Ticket #593 (Start masking and alignment) created by
- Part of #533. The wizard is started after successfully demultiplexing …
- 2:23 PM Changeset [2374] by
- References #571: Update Reggie to new scripting pattern Fixed for …
- 12:32 PM Changeset [2373] by
- References #547: Start Demux and Merge Summarize number of …
- 10:57 AM Changeset [2372] by
- References #547: Start Demux and Merge Better error handling when …
- 7:50 AM Ticket #560 (Use annotations on Histology work list to indicate progress) closed by
- fixed: (In [2371]) Fixes #560: Use annotations on Histology work list to …
- 7:50 AM Changeset [2371] by
- Fixes #560: Use annotations on Histology work list to indicate …
Apr 22, 2014:
- 2:09 PM Changeset [2370] by
- References #571: Update Reggie to new scripting pattern Fixed on the …
- 9:47 AM Changeset [2369] by
- References #571: Update Reggie to new scripting pattern Fixed on the …
Apr 17, 2014:
- 12:25 PM Ticket #579 (Store serial number of sequencers as annotations on hardware items) closed by
- fixed: (In [2368]) Fixes #579: Store serial number of sequencers as …
- 12:24 PM Changeset [2368] by
- Fixes #579: Store serial number of sequencers as annotations on …
- 11:12 AM Changeset [2367] by
- References #548: Register Demux and Merge as ended Submit …
Apr 16, 2014:
- 2:52 PM Changeset [2366] by
- References #548: Register Demux and Merge as ended Display number of …
- 2:51 PM Changeset [2365] by
- References #547: Start Demux and Merge Generated sript for demux now …
Apr 15, 2014:
- 2:41 PM Changeset [2364] by
- References #548: Register Demux and Merge as ended Started with the …
Apr 14, 2014:
- 2:21 PM Changeset [2363] by
- References #547: Start Demux and Merge Cleaning up a bit.
- 1:24 PM Changeset [2362] by
-
References #547: Start Demux and Merge
Added
ScriptBuilderfor more … - 10:32 AM Changeset [2361] by
- References #547: Start Demux and Merge Implemented primitive progress …
Apr 11, 2014:
- 3:10 PM Changeset [2360] by
-
Refs #592. Outermost Ant build file
build.xmland file … - 2:39 PM Ticket #592 (Lab environment extension improved report routines) created by
- The lab environment extension should have improved report routines, …
- 2:19 PM Ticket #529 (Retrieve and store temperature and humidity measurements) closed by
- fixed: Ticket closed as a first version of the lab environment extension has …
- 2:09 PM Milestone LabEnv v1.0 completed
- The first release of the LabEnv extension to BASE, a package allowing …
- 2:02 PM net.sf.basedb.labenv edited by
- Revision set to 2358 and Date to 2014-04-11 (diff)
- 1:50 PM Changeset [2359] by
- References #547: Start Demux and Merge Added call to …
- 12:41 PM Changeset [2358] by
- Tagging release 1.0
- 12:33 PM net.sf.basedb.labenv edited by
- Filesize for labenv-1.0.tar.gz set to 3.9 MB (diff)
- 12:25 PM PluginDownload edited by
- Added entry for LabEnv 1.0 extension to table of BASE 3 compatible … (diff)
- 12:10 PM Changeset [2357] by
-
Refs #529. Configuration file
META-INF/extensions.xmlupdated by … - 10:43 AM Changeset [2356] by
- References #547: Start Demux and Merge Create a single job on the …
Apr 10, 2014:
- 1:47 PM Changeset [2355] by
- Removing branches/ssh-test from Reggie since it is now implemented in …
- 1:37 PM Changeset [2354] by
- References #529. Add eclipse project and classpath file and svn:ignore …
- 11:28 AM Changeset [2353] by
-
Refs #529. Lab environment extension updated in text file
readme.txt… - 11:11 AM Changeset [2352] by
- Refs #529. Lab environment extension updated when exporting …
- 10:59 AM Ticket #539 (Set "Disable log" flag on some annotation types) closed by
- fixed: (In [2351]) Fixes #539: Set "Disable log" flag on some annotation types
- 10:59 AM Changeset [2351] by
- Fixes #539: Set "Disable log" flag on some annotation types
- 10:49 AM Ticket #515 (Store sequence for barcodes as annotations on tags) closed by
- fixed: (In [2350]) Fixes #515: Store sequence for barcodes as annotations on tags
- 10:49 AM Changeset [2350] by
- Fixes #515: Store sequence for barcodes as annotations on tags
- 10:33 AM Changeset [2349] by
- Refs #529. Lab environment extension updated to only output 2 decimals …
- 10:00 AM Changeset [2348] by
-
References #547: Start Demux and Merge
FlowCellSampleSheetExporter… - 9:52 AM Changeset [2347] by
-
Refs #529. Lab environment extension updated in text file
README: … - 9:38 AM Changeset [2346] by
- Refs #529. Lab environment extension updated in outermost Ant build …
Apr 9, 2014:
- 2:56 PM Changeset [2345] by
- Refs #529. Lab environment extension updated by moving JAR file …
- 1:25 PM Changeset [2344] by
- Merge 2.15-stable from rev 2261 (2.15-beta-2) to rev 2343 (2.15) back …
- 1:19 PM Changeset [2343] by
-
Remove
HiSeqPositionannotation physical bioassay since it should be … - 11:49 AM Changeset [2342] by
- Refs #529. Lab environment extension updated by replacing all …
- 9:28 AM Changeset [2341] by
-
Refs #529. JSP files
labsensorinfo.jsp, … - 8:55 AM Milestone Reggie v2.15 completed
- Redesign clustering and sequencing startup wizard to better match …
- 8:54 AM PluginDownload edited by
- Released Reggie 2.15 (diff)
- 8:53 AM net.sf.basedb.reggie edited by
- Released Reggie 2.15 (diff)
- 8:51 AM Changeset [2340] by
- Tagging Reggie 2.15
- 8:50 AM Changeset [2339] by
- Preparing to release Reggie 2.15
- 8:34 AM Changeset [2338] by
-
Refs #529. Class/file
LabEnvService.javain …
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