Timeline



Feb 21, 2014:

3:00 PM Changeset [2245] by Nicklas Nordborg
Resetting debug flag to prepare for next release.
2:58 PM Ticket #577 (Flag histology items in HE glass/scoring wizard) updated by Nicklas Nordborg
(In [2244]) References #577: Flag histology items in HE glass/scoring …
2:58 PM Changeset [2244] by Nicklas Nordborg
References #577: Flag histology items in HE glass/scoring wizard …
1:42 PM Ticket #577 (Flag histology items in HE glass/scoring wizard) updated by Nicklas Nordborg
(In [2243]) References #577: Flag histology items in HE glass/scoring …
1:42 PM Changeset [2243] by Nicklas Nordborg
References #577: Flag histology items in HE glass/scoring wizard The …
10:38 AM Ticket #577 (Flag histology items in HE glass/scoring wizard) updated by Nicklas Nordborg
(In [2242]) References #577: Flag histology items in HE glass/scoring …
10:38 AM Changeset [2242] by Nicklas Nordborg
References #577: Flag histology items in HE glass/scoring wizard The …
8:59 AM Tickets #562,​545,​546 batch updated by Nicklas Nordborg
(In [2241]) References #562, #545 and #546. Only display pool name …
8:59 AM Changeset [2241] by Nicklas Nordborg
References #562, #545 and #546. Only display pool name once if the …
8:54 AM Changeset [2240] by Nicklas Nordborg
Marking some wizards with 'not-implemented' to prepare for 2.15 …
8:50 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2239]) References #562: Re-design clustering and sequencing …
8:50 AM Changeset [2239] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Feb 20, 2014:

2:44 PM Ticket #577 (Flag histology items in HE glass/scoring wizard) updated by Nicklas Nordborg
Status changed
2:44 PM Ticket #577 (Flag histology items in HE glass/scoring wizard) created by Nicklas Nordborg
There are currently a few cases where the embedding of a histology …
10:35 AM Changeset [2238] by Nicklas Nordborg
Fixes a potential NullPointerException due to checking the incorrect …
9:48 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2237]) References #562: Re-design clustering and sequencing …
9:48 AM Changeset [2237] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
8:57 AM Tickets #545,​546 batch updated by Nicklas Nordborg
(In [2236]) References #545 and #546. Load and display information …
8:57 AM Changeset [2236] by Nicklas Nordborg
References #545 and #546. Load and display information about pools and …

Feb 19, 2014:

3:39 PM Ticket #546 (Confirm sequencing as completed) updated by Nicklas Nordborg
(In [2235]) References #546: Confirm sequencing as completed Adding …
3:39 PM Changeset [2235] by Nicklas Nordborg
References #546: Confirm sequencing as completed Adding an option to …
3:25 PM Ticket #576 (Error message container for case summary hidden behind tool bar) updated by olle
Description changed
Typo fixed.
3:00 PM Ticket #576 (Error message container for case summary hidden behind tool bar) closed by olle
fixed: (In [2234]) Fixes #576. JSP script case_summary.jsp in …
3:00 PM Changeset [2234] by olle
Fixes #576. JSP script case_summary.jsp in …
2:56 PM Ticket #576 (Error message container for case summary hidden behind tool bar) updated by olle
Traceability note: * The case summary was introduced in Ticket #450
2:53 PM Ticket #576 (Error message container for case summary hidden behind tool bar) updated by olle
Status changed
Ticket accepted.
2:52 PM Ticket #576 (Error message container for case summary hidden behind tool bar) created by olle
The error message container for case summary is hidden behind the tool …
1:27 PM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
(In [2233]) References #545: Register sequencing as ended Avoid using …
1:27 PM Changeset [2233] by Nicklas Nordborg
References #545: Register sequencing as ended Avoid using 'failed' …

Feb 17, 2014:

3:30 PM Ticket #575 (Add sequencing information to case summary) updated by Nicklas Nordborg
(In [2232]) References #575: Add sequencing information to case …
3:30 PM Changeset [2232] by Nicklas Nordborg
References #575: Add sequencing information to case summary Include …
3:28 PM Ticket #575 (Add sequencing information to case summary) created by Nicklas Nordborg
10:03 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2231]) References #562: Re-design clustering and sequencing …
10:03 AM Changeset [2231] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
10:02 AM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
(In [2230]) References #545: Register sequencing as ended Display …
10:02 AM Changeset [2230] by Nicklas Nordborg
References #545: Register sequencing as ended Display sequencing …
10:01 AM Ticket #546 (Confirm sequencing as completed) updated by Nicklas Nordborg
(In [2229]) References #546: Confirm sequencing as completed Display …
10:01 AM Changeset [2229] by Nicklas Nordborg
References #546: Confirm sequencing as completed Display sequencing …

Feb 14, 2014:

2:45 PM net.sf.basedb.reggie/notes215 created by Nicklas Nordborg
Adding update notes for Reggie 2.15
1:47 PM Ticket #546 (Confirm sequencing as completed) updated by Nicklas Nordborg
(In [2228]) References #546: Confirm sequencing as completed New …
1:47 PM Changeset [2228] by Nicklas Nordborg
References #546: Confirm sequencing as completed New version of the …
11:19 AM Ticket #572 (Use different barcode for pools from the same plate) closed by Nicklas Nordborg
fixed
11:18 AM Ticket #546 (Confirm sequencing as completed) updated by Nicklas Nordborg
Status changed
11:18 AM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
Status changed
11:18 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2227]) References #562: Re-design clustering and sequencing …
11:18 AM Changeset [2227] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Feb 13, 2014:

1:44 PM Ticket #546 (Confirm sequencing as completed) updated by Nicklas Nordborg
(In [2226]) References #546: Confirm sequencing as completed First …
1:44 PM Changeset [2226] by Nicklas Nordborg
References #546: Confirm sequencing as completed First version of …
11:27 AM Ticket #545 (Register sequencing as ended) updated by Nicklas Nordborg
(In [2225]) References #545: Register sequencing as ended New version …
8:44 AM Ticket #533 (Add secondary analysis section to Reggie) updated by Nicklas Nordborg
(In [2225]) References #533: Register sequencing as ended New version …
8:44 AM Changeset [2225] by Nicklas Nordborg
References #533: Register sequencing as ended New version of the …

Feb 12, 2014:

11:43 AM secondary-analysis-overview-v2.pdf attached to Ticket #533 by Nicklas Nordborg
Second version of the overview
11:21 AM Ticket #547 (Start Demux and Merge) updated by Nicklas Nordborg
Description changed
Updated information about parameters for the demux program.
11:09 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2224]) References #562: Re-design clustering and sequencing …
11:09 AM Changeset [2224] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …
10:40 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) closed by olle
fixed: Ticket closed as the requested functionality has been added.
10:35 AM Tickets #565,​569,​574 batch updated by olle
(In [2223]) Refs #574. Refs #565. Refs #569. Consent and missing …
10:35 AM Changeset [2223] by olle
Refs #574. Refs #565. Refs #569. Consent and missing sample data …
10:03 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) updated by olle
Design description: Java servlet SampleReportServlet in …
9:04 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) updated by olle
Traceability note: * The consent count report was introduced in …
8:59 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) updated by olle
Status changed
Ticket accepted.
8:59 AM Ticket #574 (Missing data sample list export from consent and missing sample data ...) created by olle
Missing data sample list export should be available from the consent …

Feb 11, 2014:

9:23 AM Ticket #562 (Re-design clustering and sequencing startup wizards) updated by Nicklas Nordborg
(In [2222]) References #562: Re-design clustering and sequencing …
9:23 AM Changeset [2222] by Nicklas Nordborg
References #562: Re-design clustering and sequencing startup wizards …

Feb 10, 2014:

2:36 PM Ticket #573 (Implement a fake data generator for Qubit and Caliper files used in ...) closed by Nicklas Nordborg
fixed: (In [2221]) Fixes #573: Implement a fake data generator for Qubit and …
2:36 PM Changeset [2221] by Nicklas Nordborg
Fixes #573: Implement a fake data generator for Qubit and Caliper …
12:47 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
(In [2220]) Refs #565. Missing data sample list export updated in …
12:47 PM Changeset [2220] by olle
Refs #565. Missing data sample list export updated in preview for …
12:05 PM Ticket #569 (Sample list export for missing consent data) closed by olle
fixed: Ticket closed again since bug preventing personal data to be reported …
11:56 AM Ticket #569 (Sample list export for missing consent data) updated by olle
(In [2219]) Refs #569. Bug fixed in sample list export for missing …
11:56 AM Changeset [2219] by olle
Refs #569. Bug fixed in sample list export for missing consent data, …
11:44 AM Ticket #569 (Sample list export for missing consent data) updated by olle
Problem description: * Because of a bug in private method …
11:22 AM Ticket #569 (Sample list export for missing consent data) reopened by olle
Ticket reopened to fix bug when obtaining personal data for Case items.
11:15 AM Ticket #573 (Implement a fake data generator for Qubit and Caliper files used in ...) created by Nicklas Nordborg
This wizard is very difficult to test since it require data files from …
11:07 AM Ticket #572 (Use different barcode for pools from the same plate) updated by Nicklas Nordborg
(In [2218]) References #572: Use different barcode for pools from the …
11:07 AM Changeset [2218] by Nicklas Nordborg
References #572: Use different barcode for pools from the same plate …
9:58 AM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
(In [2217]) References #540: Make sure Reggie works with BASE 3.3 …
9:58 AM Changeset [2217] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Remove calls to …

Feb 7, 2014:

1:00 PM Ticket #572 (Use different barcode for pools from the same plate) created by Nicklas Nordborg
A pool typically consist of 21 samples of the 24 that make up 3 …
10:37 AM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
(In [2216]) References #540: Make sure Reggie works with BASE 3.3 …
10:37 AM Changeset [2216] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Include …
8:11 AM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
(In [2215]) References #540: Make sure Reggie works with BASE 3.3 Use …
8:11 AM Changeset [2215] by Nicklas Nordborg
References #540: Make sure Reggie works with BASE 3.3 Use …

Feb 6, 2014:

3:29 PM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
Description changed
3:28 PM Ticket #571 (Update Reggie to new scripting pattern (first step)) created by Nicklas Nordborg
Similar to #564, but Reggie contains a lot more script than any of the …
3:03 PM Ticket #540 (Make sure Reggie works with BASE 3.3) updated by Nicklas Nordborg
Status, Description, Milestone changed
1:27 PM Ticket #570 (Installation wizard incorrectly display '0 more...') closed by Nicklas Nordborg
fixed: (In [2214]) Fixes #570: Installation wizard incorrectly display '0 more...'
1:27 PM Changeset [2214] by Nicklas Nordborg
Fixes #570: Installation wizard incorrectly display '0 more...'
1:27 PM Ticket #570 (Installation wizard incorrectly display '0 more...') created by Nicklas Nordborg
If all items in a section in the installation wizard has an error they …

Feb 4, 2014:

2:19 PM Ticket #569 (Sample list export for missing consent data) closed by olle
fixed: Ticket closed since the requested functionality has been added.
2:16 PM Ticket #569 (Sample list export for missing consent data) updated by olle
(In [2213]) Refs #569. Java servlet ExportServlet.java in …
2:16 PM Changeset [2213] by olle
Refs #569. Java servlet ExportServlet.java in …
2:06 PM Ticket #569 (Sample list export for missing consent data) updated by olle
(In [2212]) Refs #569. First version of sample list export for missing …
2:06 PM Changeset [2212] by olle
Refs #569. First version of sample list export for missing consent …
1:46 PM Ticket #569 (Sample list export for missing consent data) updated by olle
Traceability note: * The consent count report was introduced in …
1:39 PM Ticket #569 (Sample list export for missing consent data) updated by olle
Status changed
Ticket accepted.
1:39 PM Ticket #569 (Sample list export for missing consent data) created by olle
It should be possible to export a sample list for missing consent …

Feb 3, 2014:

11:47 AM Ticket #568 (Update to MEV 4.9) closed by Nicklas Nordborg
fixed: (In [2211]) Fixes #568: Update to MEV 4.9 Changed to MeV 4.9. There …
11:47 AM Changeset [2211] by Nicklas Nordborg
Fixes #568: Update to MEV 4.9 Changed to MeV 4.9. There was an issue …
9:30 AM Ticket #565 (Missing sample data report should support sample list export) closed by olle
fixed: Ticket closed since the requested functionality has been added.
9:29 AM Ticket #563 (Report servlet code should be refactored for blood sample filter) closed by olle
fixed: Ticket closed since the described code has been refactored.
9:23 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
(In [2210]) Refs #565. …
9:13 AM Changeset [2210] by olle
Ref #565. Missing data sample list export updated to move the …
8:37 AM Ticket #568 (Update to MEV 4.9) created by Nicklas Nordborg
http://www.tm4.org/mev.html
8:37 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Design update: * It was decided to move the new functionality to a …
8:36 AM Ticket #567 (Update MEV extension to new scripting pattern) closed by Nicklas Nordborg
fixed: (In [2209]) Fixes #567: Update MEV extension to new scripting pattern
8:36 AM Changeset [2209] by Nicklas Nordborg
Fixes #567: Update MEV extension to new scripting pattern

Jan 31, 2014:

3:19 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Description changed
Ticket description updated by fixing typo.
12:46 PM Ticket #567 (Update MEV extension to new scripting pattern) created by Nicklas Nordborg
Similar to #564.
12:44 PM Ticket #566 (Update print extension to new scripting pattern) closed by Nicklas Nordborg
fixed: (In [2208]) Fixes #566: Update print extension to new scripting pattern
12:44 PM Changeset [2208] by Nicklas Nordborg
Fixes #566: Update print extension to new scripting pattern
11:52 AM Ticket #566 (Update print extension to new scripting pattern) created by Nicklas Nordborg
Similar to #564.
11:41 AM Ticket #564 (Update example extensions to new scripting pattern) closed by Nicklas Nordborg
fixed
11:41 AM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
(In [2207]) References #564: Update example extensions to new …
11:41 AM Changeset [2207] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …
10:24 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
(In [2206]) Refs #565. Missing sample data report updated with sample …
10:24 AM Changeset [2206] by olle
Refs #565. Missing sample data report updated with sample list export: …
10:01 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Design discussion. 1. In the last step before a report is generated, …
8:31 AM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Description changed
Ticket description updated regarding values to report and their order. …

Jan 30, 2014:

12:36 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Traceability note: * The missing sample data report was introduced …
12:22 PM Ticket #565 (Missing sample data report should support sample list export) updated by olle
Status changed
Ticket accepted.
12:22 PM Ticket #565 (Missing sample data report should support sample list export) created by olle
Missing sample data report should support sample list export. An …

Jan 29, 2014:

10:51 AM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
(In [2205]) References #564: Update example extensions to new …
10:51 AM Changeset [2205] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …

Jan 28, 2014:

2:36 PM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
(In [2204]) References #564: Update example extensions to new …
2:36 PM Changeset [2204] by Nicklas Nordborg
References #564: Update example extensions to new scripting pattern …
1:40 PM Ticket #564 (Update example extensions to new scripting pattern) updated by Nicklas Nordborg
Status changed
1:40 PM Ticket #564 (Update example extensions to new scripting pattern) created by Nicklas Nordborg
The new scripting pattering is to avoid inline event handlers …
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