Timeline
Oct 9, 2013:
- 3:00 PM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2056]) Refs #501. Lab protocol for clustering updated in JSP …
- 3:00 PM Changeset [2056] by
- Refs #501. Lab protocol for clustering updated in JSP script …
- 2:52 PM Ticket #501 (Generate lab protocol for clustering) updated by
- Design update: * The general data table in each flow cell section …
- 11:56 AM Ticket #501 (Generate lab protocol for clustering) updated by
- Note: The subversion message text for change set …
- 11:53 AM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2055]) Refs #501. Lab protocol for clustering updated in JSP …
- 11:53 AM Changeset [2055] by
- Refs #501. Lab protocol for clustering updated in JSP script …
- 11:20 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- (In [2054]) Refs #471. Library preparation information in 'Case …
- 11:20 AM Changeset [2054] by
- Refs #471. Library preparation information in 'Case Summary' updated …
- 11:17 AM Ticket #503 (Change pooling strategy) updated by
- (In [2053]) References #503: Change pooling strategy Updates to the …
- 11:17 AM Changeset [2053] by
- References #503: Change pooling strategy Updates to the pooling lab …
- 11:10 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- (In [2052]) Refs #471. Library preparation information in 'Case …
- 11:10 AM Changeset [2052] by
- Refs #471. Library preparation information in 'Case Summary' updated …
- 10:52 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- Design update: * An entry for Pooled Library items should be …
- 8:57 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- Design note regarding "extraction date" for mRNA, cDNA, and …
- 8:00 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- (In [2051]) Refs #471. Library preparation information in 'Case …
- 7:59 AM Changeset [2051] by
- Refs #471. Library preparation information in 'Case Summary' updated …
- 7:54 AM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- Design update: * Entries for mRNA, cDNA, and Library …
Oct 8, 2013:
- 12:31 PM Ticket #514 (Do not enter date if time is missing in specimen tube registration) created by
- Ticket #437 made a few changes to how date and times are validated in …
Oct 7, 2013:
- 4:51 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
-
Milestone changed
Milestone changed to Reggie v2.13. - 4:46 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- (In [2050]) Refs #471. First version of library preparation …
- 4:46 PM Changeset [2050] by
- Refs #471. First version of library preparation information in 'Case …
- 4:41 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
-
Design implementation:
* JSP script
case_summary.jspin … - 3:58 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- Design description for first version of library preparation …
- 3:38 PM Ticket #481 (Register prepared flow cells) updated by
- (In [2049]) References #481: Register prepared flow cells The wizard …
- 3:38 PM Changeset [2049] by
- References #481: Register prepared flow cells The wizard now creates …
- 3:33 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
-
Status changed
- 3:33 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
- Ticket accepted.
- 3:33 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) updated by
-
Owner changed
- 1:11 PM Ticket #513 (Make it easier to spot problems in installation wizard) closed by
- fixed: (In [2048]) Fixes #513: Make it easier to spot problems in …
- 1:11 PM Changeset [2048] by
- Fixes #513: Make it easier to spot problems in installation wizard …
- 11:45 AM Ticket #513 (Make it easier to spot problems in installation wizard) updated by
-
Status changed
- 11:45 AM Ticket #513 (Make it easier to spot problems in installation wizard) created by
- The number of items created in the installation wizard is now really …
- 11:27 AM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2047]) Refs #501. Lab protocol for clustering updated in JSP …
- 11:27 AM Changeset [2047] by
- Refs #501. Lab protocol for clustering updated in JSP script …
- 11:17 AM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2046]) Refs #501. Lab protocol for clustering updated in JSP …
- 11:17 AM Changeset [2046] by
- Refs #501. Lab protocol for clustering updated in JSP script …
- 11:07 AM Ticket #502 (Design flow cells) updated by
- (In [2045]) References #502: Design flow cells Added support for …
- 11:07 AM Changeset [2045] by
- References #502: Design flow cells Added support for adding comments …
- 9:27 AM Ticket #512 (Updates to the register pooled libraries wizard) updated by
- (In [2044]) References #512: Updates to the register pooled libraries …
- 9:27 AM Changeset [2044] by
- References #512: Updates to the register pooled libraries wizard …
- 9:26 AM Ticket #512 (Updates to the register pooled libraries wizard) updated by
-
Status changed
- 9:26 AM Ticket #512 (Updates to the register pooled libraries wizard) created by
- The first version was implemented in #480. Due to changes in the …
- 8:47 AM Ticket #503 (Change pooling strategy) updated by
- (In [2043]) References #503: Change pooling strategy Fixed bug in …
- 8:47 AM Changeset [2043] by
- References #503: Change pooling strategy Fixed bug in volume …
Oct 4, 2013:
- 1:51 PM Ticket #503 (Change pooling strategy) updated by
- (In [2042]) References #503: Change pooling strategy Added support …
- 1:51 PM Changeset [2042] by
- References #503: Change pooling strategy Added support for writing …
- 12:50 PM net.sf.basedb.reggie.notes213 edited by
- Removing section about the need to register pools since it is no … (diff)
- 12:47 PM Ticket #503 (Change pooling strategy) updated by
- (In [2041]) References #503: Change pooling strategy Implemented …
- 12:47 PM Changeset [2041] by
- References #503: Change pooling strategy Implemented option to select …
Oct 3, 2013:
- 3:32 PM Ticket #503 (Change pooling strategy) updated by
- (In [2040]) References #503: Change pooling strategy Better handling …
- 3:32 PM Changeset [2040] by
- References #503: Change pooling strategy Better handling of the …
- 2:54 PM Ticket #509 (Error icons after successful registration of caliper lib results) closed by
- fixed: Ticket closed after successful passing of local test.
- 2:47 PM Ticket #509 (Error icons after successful registration of caliper lib results) updated by
-
(In [2039]) Refs #509. JSP script
lib_registration.jspin … - 2:47 PM Changeset [2039] by
-
Refs #509. JSP script
lib_registration.jspin … - 2:44 PM Ticket #509 (Error icons after successful registration of caliper lib results) updated by
- Problem discussion: * Library registration is managed by JSP script …
- 2:22 PM Ticket #509 (Error icons after successful registration of caliper lib results) updated by
-
Status changed
Ticket accepted. - 2:21 PM Ticket #509 (Error icons after successful registration of caliper lib results) updated by
-
Owner changed
- 11:29 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) closed by
- fixed: (In [2038]) Fixes #506. Installation wizard updated to check if …
- 11:29 AM Changeset [2038] by
- Fixes #506. Installation wizard updated to check if biomaterial is …
- 11:25 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) updated by
- Test of code changes: * Test setup: On a test system, log-in to …
- 11:10 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) updated by
- Problem discussion: * The installation wizard is managed by Java …
- 10:30 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) updated by
-
Status changed
Ticket accepted. - 10:29 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) updated by
-
Owner changed
- 9:40 AM net.sf.basedb.reggie.notes213 edited by
- Clarifying that only item 1 need to be done before installing the update (diff)
- 9:37 AM Ticket #511 (Consent information not copied from PreNeo blood registration) closed by
- fixed: Added instructions for manually copying consent informatio. See …
- 9:36 AM net.sf.basedb.reggie.notes213 edited by
- Adding note about fixing missing consent annotations on cases (diff)
- 9:23 AM Ticket #511 (Consent information not copied from PreNeo blood registration) updated by
- (In [2037]) References #511: Consent information not copied from …
- 9:23 AM Changeset [2037] by
- References #511: Consent information not copied from PreNeo blood …
- 9:21 AM Ticket #511 (Consent information not copied from PreNeo blood registration) updated by
-
Status, Summary changed
After investigating this a bit more it seems like the root cause is … - 8:20 AM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
-
(In [2036]) Refs #449. Javascript file
reggie.jsin … - 8:20 AM Changeset [2036] by
-
Refs #449. Javascript file
reggie.jsinreggie/resources/updated …
Oct 2, 2013:
- 4:07 PM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2035]) Refs #501. Lab protocol for clustering updated in JSP …
- 4:07 PM Changeset [2035] by
- Refs #501. Lab protocol for clustering updated in JSP script …
- 3:41 PM Ticket #511 (Consent information not copied from PreNeo blood registration) created by
- It seems like registering information from a patient in the following …
- 2:50 PM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2034]) Refs #501. Directory that was erroneously copied in …
- 2:50 PM Changeset [2034] by
- Refs #501. Directory that was erroneously copied in changeset 2033 is …
- 2:13 PM Ticket #501 (Generate lab protocol for clustering) updated by
- (In [2033]) Refs #501. First version of wizard for clustering lab protocol.
- 2:13 PM Changeset [2033] by
- Refs #501. First version of wizard for clustering lab protocol.
- 1:57 PM Ticket #507 ('dil' items are created with incorrect value for PoolConc annotation) closed by
- fixed: Added instructions for manually fixing issues PoolConc values. See …
- 1:56 PM Ticket #501 (Generate lab protocol for clustering) updated by
- Note on the table data in first version of the lab protocol for …
- 1:56 PM net.sf.basedb.reggie.notes213 edited by
- Adding note about fixing PoolConc annotations (diff)
- 1:29 PM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) closed by
- fixed: Added instructions for manually fixing issues with library and RNA …
- 1:27 PM net.sf.basedb.reggie.notes213 edited by
- More instructions for the manual fix for #508 (diff)
- 11:50 AM net.sf.basedb.reggie.notes213 edited by
- Adding note about flagging some libraries (diff)
- 11:47 AM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) updated by
- (In [2032]) References #508: Library plates remain in the 'Create …
- 11:47 AM Changeset [2032] by
- References #508: Library plates remain in the 'Create pooled …
- 9:11 AM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) updated by
-
Status changed
- 9:11 AM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) updated by
- After some initial investigations it seems like the root cause is that …
Oct 1, 2013:
- 4:37 PM Ticket #501 (Generate lab protocol for clustering) updated by
- Design discussion. * The clustering protocol wizard will consist of …
- 4:18 PM Ticket #501 (Generate lab protocol for clustering) updated by
-
Description changed
Typo fixed. - 4:15 PM Ticket #501 (Generate lab protocol for clustering) updated by
-
Description changed
Non-link camel-cased entities are now escaped, for increased readability. - 2:07 PM Ticket #481 (Register prepared flow cells) updated by
- (In [2031]) References #481: Register prepared flow cells Added …
- 2:07 PM Changeset [2031] by
- References #481: Register prepared flow cells Added fields for …
- 1:14 PM Ticket #501 (Generate lab protocol for clustering) updated by
-
Status, Owner changed
Sep 30, 2013:
- 2:42 PM Ticket #499 (Export sample sheet for flow cell) updated by
- (In [2030]) References #499: Export sample sheet for flow cell The …
- 2:42 PM Changeset [2030] by
- References #499: Export sample sheet for flow cell The exporter now …
- 2:01 PM Ticket #502 (Design flow cells) updated by
- (In [2029]) References #502: Design flow cells Re-enable call to …
- 2:01 PM Changeset [2029] by
- References #502: Design flow cells Re-enable call to dc.commit() …
- 1:59 PM Ticket #502 (Design flow cells) updated by
- (In [2028]) References #502: Design flow cells Added "ReadString" …
- 1:59 PM Changeset [2028] by
- References #502: Design flow cells Added "ReadString" field and …
- 9:57 AM Ticket #510 (Consistent use of terms in the lab protocols and Reggie interface) created by
- The lab personnel has noted that in some cases names and terms for …
- 9:44 AM Ticket #502 (Design flow cells) updated by
-
Status changed
- 9:43 AM net.sf.basedb.reggie.notes213 edited by
- Important note about updating (diff)
- 9:38 AM Ticket #504 (Allow target volume/library in a pool to be changed) closed by
- fixed: Fixed in [2027] as part of #503.
- 9:36 AM Tickets #507,503 batch updated by
- (In [2027]) References #503: Change pooling strategy The new …
- 9:36 AM Changeset [2027] by
- References #503: Change pooling strategy The new implementation works …
Sep 27, 2013:
- 2:30 PM Ticket #509 (Error icons after successful registration of caliper lib results) created by
- The Library registration wizard display error icons for all …
- 2:28 PM Ticket #508 (Library plates remain in the 'Create pooled libraries' wizard after ...) created by
- For some reason the Create pooled libraries wizard on production …
- 9:27 AM net.sf.basedb.reggie.notes213 created by
- Adding page with update notes for 2.13
- 9:25 AM net.sf.basedb.reggie edited by
- Link to update notes regarding #507 (diff)
- 9:22 AM Ticket #507 ('dil' items are created with incorrect value for PoolConc annotation) created by
- There is a bug when calculating concentrations for the extra 'dil' …
Sep 26, 2013:
- 9:03 AM Ticket #506 (Installation wizard doesn't check if biomaterial list is shared) created by
- The installation wizard create the "Flagged RNA" biomaterial list …
Sep 25, 2013:
- 4:11 PM Ticket #79 (Center on assay (se.lu.onk.Center)) closed by
- fixed: Ticket closed since the desired functionality has been added.
- 4:09 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
- (In [2026]) Refs #79. Center plug-in updated to allow centering using …
- 4:09 PM Changeset [2026] by
- Refs #79. Center plug-in updated to allow centering using different …
- 3:59 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
- Note on finding the extra debug files, if these should be created. …
- 3:00 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
- Implementation details: 1. BASE1 plug-in configuration file …
- 2:29 PM Ticket #503 (Change pooling strategy) updated by
-
Status changed
- 2:29 PM Ticket #504 (Allow target volume/library in a pool to be changed) updated by
- (In [2025]) References #504: Allow target volume/library in a pool to …
- 2:29 PM Changeset [2025] by
- References #504: Allow target volume/library in a pool to be changed …
- 1:39 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
- Design update: In order to make the normalization more flexible, the …
- 12:34 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
- Background: The centering plug-in is intended to work with data …
- 12:06 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
-
Status changed
Ticket accepted. - 12:06 PM Ticket #79 (Center on assay (se.lu.onk.Center)) updated by
-
Owner changed
Sep 23, 2013:
- 12:49 PM Ticket #504 (Allow target volume/library in a pool to be changed) updated by
-
Status changed
Sep 20, 2013:
- 2:56 PM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) closed by
- fixed: Ticket closed as the requested functionality has been added.
- 2:55 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) closed by
- fixed: Ticket closed as the requested functionality has been added.
- 2:51 PM Tickets #449,505 batch updated by
- (In [2024]) Refs #505. Refs #449. Sample source reports updated to …
- 2:51 PM Changeset [2024] by
- Refs #505. Refs #449. Sample source reports updated to support …
- 1:26 PM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
- Design implementation comments: The affected files are JSP script …
- 8:51 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
- Design updates for the sample source reports: Sample count report: …
Sep 19, 2013:
- 4:36 PM Tickets #449,505 batch updated by
- (In [2023]) Refs #449. Refs #505. First version of wizard for …
- 4:36 PM Changeset [2023] by
- Refs #449. Refs #505. First version of wizard for registration/update …
- 1:52 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
- Design discussion: * The wizard for registration of follow-up blood …
- 1:37 PM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
-
Description, Summary changed
- 1:36 PM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
- Traceability note: * The report generator was introduced in Ticket …
- 11:21 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
-
Description changed
- 11:03 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
-
Status changed
Ticket accepted. - 11:03 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
-
Description changed
- 11:02 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) updated by
-
Description changed
- 10:01 AM Ticket #505 (Sample source reports should be updated to support follow-up blood samples) created by
- Sample source reports should be updated to support follow-up blood …
Sep 18, 2013:
- 1:49 PM Ticket #504 (Allow target volume/library in a pool to be changed) created by
- Currently, the target volume for each library in a pool is fixed at …
- 1:42 PM Ticket #503 (Change pooling strategy) created by
- The current pooling protocol has a problem with libraries that have a …
- 1:32 PM Ticket #502 (Design flow cells) updated by
- (In [2020]) References #481: Register prepared flow cells Preliminary …
- 1:30 PM Ticket #481 (Register prepared flow cells) updated by
-
Priority, Description changed
- 1:28 PM Ticket #501 (Generate lab protocol for clustering) updated by
-
Priority, Description changed
- 1:25 PM Ticket #502 (Design flow cells) created by
- Was part of ticket #481, but split up into a design and a registration …
- 1:22 PM Ticket #501 (Generate lab protocol for clustering) created by
- After flow cells have been designed (Create flow cell wizard, #502) it …
Sep 17, 2013:
- 2:46 PM Ticket #500 (Plugin configurations should be grouped below their plug-ins) closed by
- fixed: (In [2022]) Fixes #500: Plugin configurations should be grouped below …
- 2:46 PM Changeset [2022] by
- Fixes #500: Plugin configurations should be grouped below their plug-ins
- 1:08 PM Ticket #500 (Plugin configurations should be grouped below their plug-ins) updated by
-
Status changed
- 1:08 PM Ticket #500 (Plugin configurations should be grouped below their plug-ins) created by
- The installation wizard have two separate sections for plug-ins and …
- 1:05 PM Ticket #499 (Export sample sheet for flow cell) updated by
- (In [2021]) References #499: Export sample sheet for flow cell First …
- 1:05 PM Changeset [2021] by
- References #499: Export sample sheet for flow cell First …
Sep 16, 2013:
Sep 13, 2013:
- 11:13 AM Ticket #481 (Register prepared flow cells) updated by
- (In [2020]) References #481: Register prepared flow cells Preliminary …
- 11:13 AM Changeset [2020] by
- References #481: Register prepared flow cells Preliminary wizards for …
- 8:38 AM Ticket #499 (Export sample sheet for flow cell) created by
- The sample sheet is a tab-separated text file with data about the …
Sep 9, 2013:
- 1:25 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
- Design discussion regarding case numbers: The SCAN-B project allows …
- 12:29 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
- Background information: Special referral forms are used for follow-up …
- 12:13 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
- Traceability note: The following tickets are related to blood sample …
- 12:06 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
-
Status changed
Ticket accepted. - 12:05 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
-
Milestone changed
- 12:04 PM Ticket #449 (Add support for follow-up blood samples to the blood registration wizard) updated by
-
Owner changed
Ticket reassigned to olle - 10:26 AM Changeset [2019] by
- Preparing for future release Reggie 2.13
- 10:25 AM Milestone Reggie v2.12 completed
- See Reggie extension page for more information.
- 10:24 AM PluginDownload edited by
- Released Reggie 2.12 (diff)
- 10:24 AM net.sf.basedb.reggie edited by
- Released Reggie 2.12 (diff)
- 10:21 AM Changeset [2018] by
- Tagging Reggie 2.12
- 10:20 AM Changeset [2017] by
- Preparing to release Reggie 2.12.
- 10:08 AM Ticket #481 (Register prepared flow cells) updated by
-
Milestone changed
- 10:07 AM Ticket #478 (Implement wizards for pooling) closed by
- fixed: The pooling wizards are ok.
- 10:05 AM Ticket #480 (Register pooled libraries) closed by
- fixed
- 10:05 AM Ticket #485 (Select libraries for pooling) closed by
- fixed
- 10:05 AM Ticket #479 (Generate lab protocol for pooling) closed by
- fixed: The pooling part is ok so far.
- 10:03 AM Ticket #423 (Implement wizards for cDNA->Library processing) closed by
- fixed: All wizards in this category should be ok.
- 10:02 AM Ticket #498 (SCAN-B sites data should be updated with new entry for "Uppsala") closed by
- fixed: Core biopsies are included and use 'C' suffix on referral forms.
Note:
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