Timeline



Mar 21, 2013:

11:16 AM Ticket #427 (Re-organize jsp files into subfolders) updated by Nicklas Nordborg
Milestone changed
11:16 AM Ticket #427 (Re-organize jsp files into subfolders) closed by Nicklas Nordborg
fixed: (In [1915]) Fixes #427: Re-organize jsp files into subfolders
11:16 AM Changeset [1915] by Nicklas Nordborg
Fixes #427: Re-organize jsp files into subfolders
9:12 AM Ticket #482 (RNA item without a Lysate parent cause NullPointerException in ...) closed by Nicklas Nordborg
fixed: (In [1914]) Fixes #482: RNA item without a Lysate parent cause …
9:12 AM Changeset [1914] by Nicklas Nordborg
Fixes #482: RNA item without a Lysate parent cause …
9:03 AM Ticket #482 (RNA item without a Lysate parent cause NullPointerException in ...) created by Nicklas Nordborg
Normally all RNA items have a parent Lysate, but #422 introduced …

Mar 20, 2013:

2:50 PM Ticket #474 (Depend on BASE 3.2.2) closed by Nicklas Nordborg
fixed: (In [1913]) Fixes #474: Depend on BASE 3.2.2
2:50 PM Changeset [1913] by Nicklas Nordborg
Fixes #474: Depend on BASE 3.2.2
1:47 PM Ticket #470 (Add 'Print version' functionality to the 'Case summary' feature) closed by Nicklas Nordborg
fixed: (In [1912]) Fixes #470: Add 'Print version' functionality to the 'Case …
1:47 PM Changeset [1912] by Nicklas Nordborg
Fixes #470: Add 'Print version' functionality to the 'Case summary' …

Mar 19, 2013:

2:28 PM Ticket #479 (Generate lab protocol for pooling) updated by Nicklas Nordborg
(In [1911]) References #479: Generate lab protocol for pooling and …
2:28 PM Changeset [1911] by Nicklas Nordborg
References #479: Generate lab protocol for pooling and flow cell …
2:20 PM Ticket #479 (Generate lab protocol for pooling) updated by Nicklas Nordborg
Status changed
2:20 PM Ticket #478 (Implement wizards for pooling) updated by Nicklas Nordborg
Status changed
11:12 AM Ticket #478 (Implement wizards for pooling) updated by Nicklas Nordborg
(In [1910]) References #478: Implement wizards for pooling and flow …
11:12 AM Changeset [1910] by Nicklas Nordborg
References #478: Implement wizards for pooling and flow cell …
9:44 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1909]) References #473: Register library processing results Add …
9:44 AM Changeset [1909] by Nicklas Nordborg
References #473: Register library processing results Add support for …
8:35 AM Ticket #478 (Implement wizards for pooling) updated by Nicklas Nordborg
Description changed
8:34 AM Ticket #481 (Register prepared flow cells) created by Nicklas Nordborg
This wizard is used to register that a set of flow cells have been …
8:33 AM Ticket #478 (Implement wizards for pooling) updated by Nicklas Nordborg
Description changed
8:33 AM Ticket #480 (Register pooled libraries) created by Nicklas Nordborg
This is the second wizard in the pooling and flow cell processing …
8:30 AM Ticket #478 (Implement wizards for pooling) updated by Nicklas Nordborg
Priority, Description changed
8:30 AM Ticket #479 (Generate lab protocol for pooling) created by Nicklas Nordborg
This is a wizard in the pooling and flow cell processing group of …
8:26 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
Description changed
8:24 AM Ticket #472 (Export data to files needed for library preparation) updated by Nicklas Nordborg
Description changed
8:19 AM Ticket #457 (Generate lab protocol for cDNA -> Library preparation) updated by Nicklas Nordborg
Description changed
8:17 AM Ticket #456 (Barcode layout wizard) updated by Nicklas Nordborg
Description changed
8:14 AM Ticket #478 (Implement wizards for pooling) created by Nicklas Nordborg
This ticket is the master ticket for the multiple wizards that are …
8:08 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1908]) References #473: Register library processing results It …
8:08 AM Changeset [1908] by Nicklas Nordborg
References #473: Register library processing results It should now be …

Mar 18, 2013:

8:12 AM Ticket #477 (Display list of other case numbers associated with a patient in the ...) closed by Nicklas Nordborg
fixed: (In [1907]) Fixes #477: Display list of other case numbers associated …
8:12 AM Changeset [1907] by Nicklas Nordborg
Fixes #477: Display list of other case numbers associated with a …

Mar 15, 2013:

11:41 AM Ticket #477 (Display list of other case numbers associated with a patient in the ...) created by Nicklas Nordborg
A single patient may (for a number of reasons) have more than one case …
10:01 AM Ticket #476 (Get list of blood samples where at least one RNA extract exists) updated by Nicklas Nordborg
Some interesting performance information about the above SQL query. …

Mar 14, 2013:

1:33 PM Ticket #476 (Get list of blood samples where at least one RNA extract exists) updated by Nicklas Nordborg
To begin with, it is interesting to just count the current number of …
12:53 PM Ticket #476 (Get list of blood samples where at least one RNA extract exists) created by Nicklas Nordborg
Some time in the future a process to extract DNA from the collected …
9:23 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1906]) References #473: Register library processing results …
9:23 AM Changeset [1906] by Nicklas Nordborg
References #473: Register library processing results Added …

Mar 13, 2013:

11:16 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1905]) References #473: Register library processing results Add …
11:16 AM Changeset [1905] by Nicklas Nordborg
References #473: Register library processing results Add possibility …
11:02 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1904]) References #473: Register library processing results …
11:02 AM Changeset [1904] by Nicklas Nordborg
References #473: Register library processing results Prepared the …
9:24 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1903]) References #473: Register library processing results …
9:24 AM Changeset [1903]
This is an empty revision for padding.
8:57 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1902]) References #473: Register library processing results …
8:57 AM Changeset [1902] by Nicklas Nordborg
References #473: Register library processing results Added …

Mar 12, 2013:

3:10 PM Ticket #475 (Improve box placement suggestion in specimen tube registration) created by Nicklas Nordborg
There is really no need for the "Suggest" function. The wizard should …

Mar 7, 2013:

2:41 PM Ticket #472 (Export data to files needed for library preparation) updated by Nicklas Nordborg
(In [1901]) References #472: Export data to files needed for library …
2:41 PM Changeset [1901] by Nicklas Nordborg
References #472: Export data to files needed for library preparation …
2:29 PM Ticket #472 (Export data to files needed for library preparation) updated by Nicklas Nordborg
(In [1900]) References #472: Export data to files needed for library …
2:29 PM Changeset [1900] by Nicklas Nordborg
References #472: Export data to files needed for library preparation …
10:56 AM Tickets #422,​423 batch updated by Nicklas Nordborg
(In [1899]) References #422 and #423. New name pattern for mRNA, cDNA …
10:56 AM Changeset [1899] by Nicklas Nordborg
References #422 and #423. New name pattern for mRNA, cDNA and Library …
9:41 AM Ticket #425 (Generate a lab protocol for RNA -> cDNA processing) updated by Nicklas Nordborg
(In [1898]) References #425: Generate a lab protocol for RNA -> cDNA …
9:41 AM Changeset [1898] by Nicklas Nordborg
References #425: Generate a lab protocol for RNA -> cDNA processing …

Mar 6, 2013:

11:55 AM Ticket #474 (Depend on BASE 3.2.2) created by Nicklas Nordborg
We found a bug in BASE that may potentially lead to …
9:39 AM Ticket #469 (Better handling of login timeout in Reggie wizards) closed by Nicklas Nordborg
fixed: (In [1897]) Fixes #469: Better handling of login timeout in Reggie …
9:39 AM Changeset [1897] by Nicklas Nordborg
Fixes #469: Better handling of login timeout in Reggie wizards A …

Mar 5, 2013:

1:16 PM Ticket #469 (Better handling of login timeout in Reggie wizards) updated by Nicklas Nordborg
Status, Milestone changed
1:16 PM Ticket #472 (Export data to files needed for library preparation) updated by Nicklas Nordborg
(In [1896]) References #472: Export data to files needed for library …
1:16 PM Changeset [1896] by Nicklas Nordborg
References #472: Export data to files needed for library preparation …
9:02 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
(In [1895]) References #473: Register library processing results …
9:02 AM Changeset [1895] by Nicklas Nordborg
References #473: Register library processing results Started with the …
8:53 AM Ticket #472 (Export data to files needed for library preparation) updated by Nicklas Nordborg
Status changed
8:53 AM Ticket #473 (Register library processing results) updated by Nicklas Nordborg
Status changed
8:36 AM Ticket #423 (Implement wizards for cDNA->Library processing) updated by Nicklas Nordborg
Description, Summary changed
8:35 AM Ticket #473 (Register library processing results) created by Nicklas Nordborg
This wizard is the last step in #423. In the lab, the library …
8:26 AM Ticket #423 (Implement wizards for cDNA->Library processing) updated by Nicklas Nordborg
Description changed
8:25 AM Ticket #472 (Export data to files needed for library preparation) created by Nicklas Nordborg
Caliper and Qubit are used for quality control and measuring …

Mar 4, 2013:

1:08 PM Ticket #441 (Register cDNA plate as completed) closed by Nicklas Nordborg
fixed
1:07 PM Ticket #436 (Import mRNA quality control results) closed by Nicklas Nordborg
fixed
1:05 PM Ticket #425 (Generate a lab protocol for RNA -> cDNA processing) closed by Nicklas Nordborg
fixed
1:04 PM Ticket #424 (Select RNA items for library preparation) closed by Nicklas Nordborg
fixed: Closing this ticket for now. There may be some smaller issues to be …
1:02 PM Ticket #440 (Export data to files needed for mRNA/cDNA processing) closed by Nicklas Nordborg
wontfix: Seems like the BioAnalyzer software has no support for importing …
1:00 PM Ticket #457 (Generate lab protocol for cDNA -> Library preparation) updated by Nicklas Nordborg
(In [1894]) References #457: Generate lab protocol for cDNA -> Library …
12:59 PM Changeset [1894] by Nicklas Nordborg
References #457: Generate lab protocol for cDNA -> Library preparation …
10:55 AM Ticket #456 (Barcode layout wizard) updated by Nicklas Nordborg
(In [1893]) References #456: Barcode layout wizard Use missing …
10:55 AM Changeset [1893] by Nicklas Nordborg
References #456: Barcode layout wizard Use missing BARCODE_VARIANT …

Mar 1, 2013:

1:26 PM Ticket #471 (Add library preparation information to the 'Case summary' feature) created by Nicklas Nordborg
Once #422 and #423 has been implemented there will be more information …
1:23 PM Ticket #470 (Add 'Print version' functionality to the 'Case summary' feature) created by Nicklas Nordborg
See #462 and #450. The summary currently fits on one page, but if we …
1:19 PM Ticket #422 (Implement wizards for RNA->cDNA processing) updated by Nicklas Nordborg
(In [1892]) References #422: Implement wizards for RNA->cDNA …
1:19 PM Changeset [1892] by Nicklas Nordborg
References #422: Implement wizards for RNA->cDNA processing Remove …
1:02 PM Ticket #425 (Generate a lab protocol for RNA -> cDNA processing) updated by Nicklas Nordborg
(In [1891]) References #425: Generate a lab protocol for RNA -> cDNA …
1:02 PM Changeset [1891] by Nicklas Nordborg
References #425: Generate a lab protocol for RNA -> cDNA processing …
12:41 PM Ticket #469 (Better handling of login timeout in Reggie wizards) created by Nicklas Nordborg
Some of the Reggie wizards may take some time to complete, for …
11:12 AM Tickets #436,​441 batch updated by Nicklas Nordborg
(In [1890]) References #436 and #441. Added support for registering a …
11:12 AM Changeset [1890] by Nicklas Nordborg
References #436 and #441. Added support for registering a cDNA plate …

Feb 27, 2013:

2:30 PM Tickets #424,​436 batch updated by Nicklas Nordborg
(In [1889]) References #436 and #424. Added support for registering …
2:29 PM Changeset [1889] by Nicklas Nordborg
References #436 and #424. Added support for registering a mRNA plate …
1:47 PM Ticket #468 (NullPointerException when registering Caliper results if Plate name ...) closed by Nicklas Nordborg
fixed: (In [1888]) Fixes #468: NullPointerException when registering Caliper …
1:47 PM Changeset [1888] by Nicklas Nordborg
Fixes #468: NullPointerException when registering Caliper results if …
1:43 PM Ticket #468 (NullPointerException when registering Caliper results if Plate name ...) created by Nicklas Nordborg
If the WellTable.csv contains a row with an empty Plate name value, …
12:11 PM Changeset [1887] by olle
README file updated by change of extension full name from BRCA-Reggie …
12:07 PM net.sf.basedb.brcareg edited by olle
Extension full name changed from BRCA-Reggie to BRCA-Reg, in order to … (diff)
10:39 AM Changeset [1886] by olle
Fixed typo.
9:32 AM Changeset [1885] by olle
Preliminary version of README for BRCA-Reggie wiki page.
9:26 AM net.sf.basedb.brcareg edited by olle
Changed README link to trunk, until a tagged version is available (diff)
9:25 AM net.sf.basedb.brcareg edited by olle
(diff)
9:07 AM net.sf.basedb.brcareg created by olle
Page created
8:03 AM Changeset [1884] by olle
SVN project brcareg remote folder tags created.
8:02 AM Changeset [1883] by olle
SVN project brcareg remote folder trunk created.
8:00 AM Changeset [1882] by olle
SVN project brcareg created.

Feb 26, 2013:

11:00 AM Ticket #424 (Select RNA items for library preparation) updated by Nicklas Nordborg
(In [1881]) References #424: Select RNA items for library preparation …
11:00 AM Changeset [1881] by Nicklas Nordborg
References #424: Select RNA items for library preparation Update …

Feb 22, 2013:

12:51 PM Changeset [1880] by Nicklas Nordborg
Merge changes in Reggie 2.11.1 back to trunk.
12:47 PM Milestone Reggie v2.11.1 completed
Bug fixes for Reggie 2.11. See [wiki:net.sf.basedb.reggie Reggie …
12:47 PM PluginDownload edited by Nicklas Nordborg
Released Reggie 2.11.1 (diff)
12:46 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 2.11.1 (diff)
12:45 PM reggie-2.11.1.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 2.11.1
12:45 PM Changeset [1879] by Nicklas Nordborg
Tagging Reggie 2.11.1
12:44 PM Changeset [1878] by Nicklas Nordborg
Preparing to release Reggie 2.11.1
12:43 PM Ticket #466 (Incorrect titles in some sample processing statistics plots) closed by Nicklas Nordborg
fixed: (In [1877]) Fixes #466: Incorrect titles in some sample processing …
12:43 PM Changeset [1877] by Nicklas Nordborg
Fixes #466: Incorrect titles in some sample processing statistics plots
12:35 PM Ticket #467 (Display guidelines when moving mouse over sample processing plots) closed by Nicklas Nordborg
fixed: (In [1876]) Fixes #467: Display guidelines when moving mouse over …
12:35 PM Changeset [1876] by Nicklas Nordborg
Fixes #467: Display guidelines when moving mouse over sample …
10:31 AM Ticket #467 (Display guidelines when moving mouse over sample processing plots) created by Nicklas Nordborg
Some plots have narrow boxes and it can be hard to see exactly which …
8:52 AM Ticket #465 (Improve printing of canvas elements) closed by Nicklas Nordborg
fixed: (In [1875]) Fixes #465: Improve printing of canvas elements …
8:52 AM Changeset [1875] by Nicklas Nordborg
Fixes #465: Improve printing of canvas elements Implemented by …
8:03 AM Changeset [1874] by Nicklas Nordborg
Creating bug-fix branch for Reggie 2.11

Feb 21, 2013:

10:54 AM Ticket #466 (Incorrect titles in some sample processing statistics plots) created by Nicklas Nordborg
Total quantity DNA/RNA used for SCANB extractions... should remove …
10:50 AM Ticket #465 (Improve printing of canvas elements) updated by Nicklas Nordborg
Milestone changed
10:49 AM Ticket #465 (Improve printing of canvas elements) created by Nicklas Nordborg
Although the printing feature introduced in #462 works well, there is …

Feb 20, 2013:

3:01 PM Changeset [1873] by Nicklas Nordborg
Preparing for future release Print package 1.1
3:01 PM Milestone Print package v1.0 completed
See Print package extension page for more …
3:00 PM PluginDownload edited by Nicklas Nordborg
Released Print package 1.0 (diff)
2:57 PM net.sf.basedb.print edited by Nicklas Nordborg
Released Print package 1.0 (diff)
2:55 PM base-print-1.0.tar.gz attached to net.sf.basedb.print by Nicklas Nordborg
Print package 1.0
2:54 PM Ticket #464 (Implement a 'Print' button for table listings) closed by Nicklas Nordborg
fixed
2:54 PM Changeset [1872] by Nicklas Nordborg
Tagging Print package 1.0
2:53 PM Changeset [1871] by Nicklas Nordborg
Preparing to release Print package 1.0
2:52 PM Ticket #464 (Implement a 'Print' button for table listings) updated by Nicklas Nordborg
(In [1870]) References #464: Implement a 'Print' button for table …
2:52 PM Changeset [1870] by Nicklas Nordborg
References #464: Implement a 'Print' button for table listings Should …
2:51 PM net.sf.basedb.print created by Nicklas Nordborg
Added wiki page for the 'Print package'
2:48 PM Ticket #464 (Implement a 'Print' button for table listings) created by Nicklas Nordborg
There is a problem with the current BASE GUI implementation when …
8:38 AM Changeset [1869] by Nicklas Nordborg
Adding 'trunk' folder for new "Print" extension.
8:38 AM Changeset [1868] by Nicklas Nordborg
Adding folder for new "Print" extension.
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