Timeline



Nov 3, 2011:

9:33 AM PluginDownload edited by Nicklas Nordborg
Releasing Normalization package 1.0-beta (diff)
9:30 AM net.sf.basedb.normalizers edited by Nicklas Nordborg
(diff)
9:26 AM net.sf.basedb.normalizers edited by Nicklas Nordborg
Releasing Normalization package 1.0-beta (diff)
9:18 AM normalization-plugins-1.1-beta.tar.gz attached to net.sf.basedb.normalizers by Nicklas Nordborg
Normalization package 1.1-beta
9:17 AM Changeset [1455] by Nicklas Nordborg
Tagging 'Normalization package 1.1-beta'
9:15 AM Changeset [1454] by Nicklas Nordborg
Preparing 'Normalization package 1.1-beta' release.
9:06 AM Changeset [1453] by Nicklas Nordborg
Changes for future release 'HDFS package 1.1'
9:05 AM PluginDownload edited by Nicklas Nordborg
Releasing HDFS package 1.0 (diff)
9:02 AM Milestone HDFS package v1.0 completed
See HDFS extension page for more information.
9:01 AM net.sf.basedb.hdfs edited by Nicklas Nordborg
Releasing HDFS package 1.0 (diff)
8:56 AM hdfs-1.0.tar.gz attached to net.sf.basedb.hdfs by Nicklas Nordborg
HDFS package v1.0
8:55 AM Changeset [1452] by Nicklas Nordborg
Tagging 'HDFS 1.0'
8:54 AM Changeset [1451] by Nicklas Nordborg
Preparing 'HDFS 1.0' release.
8:52 AM Ticket #304 (Implement HDFS external file support) updated by Nicklas Nordborg
(In [1450]) References #304: Implement HDFS external file support …
8:52 AM Changeset [1450] by Nicklas Nordborg
References #304: Implement HDFS external file support Fixed a …

Nov 2, 2011:

3:31 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1449]) References #330 Following changes are included in this …
3:31 PM Changeset [1449] by Martin Svensson
References #330 Following changes are included in this commit. * Tubes …
2:46 PM PluginDownload edited by Nicklas Nordborg
Releasing Illumina plug-ins 1.7 (diff)
2:44 PM Changeset [1448] by Nicklas Nordborg
Changes for future release 'Illumina plug-ins 1.8'
2:42 PM Milestone Illumina package v1.7 completed
For more information see the [wiki:net.sf.basedb.illumina Illumina …
2:41 PM net.sf.basedb.illumina edited by Nicklas Nordborg
Releasing Illumina plug-ins 1.7 (diff)
2:37 PM illumina-plugins-1.7.tar.gz attached to net.sf.basedb.illumina by Nicklas Nordborg
Illumina plug-ins 1.7
2:36 PM Changeset [1447] by Nicklas Nordborg
Tagging 'Illumina package 1.7'
2:35 PM Changeset [1446] by Nicklas Nordborg
Preparing 'Illumina package 1.7' release.
2:33 PM Ticket #311 (Updates required for BASE 3 support) updated by Nicklas Nordborg
(In [1445]) References #311: Updates required for BASE 3 support Need …
2:33 PM Changeset [1445] by Nicklas Nordborg
References #311: Updates required for BASE 3 support Need to renamed …
2:05 PM PluginDownload edited by Nicklas Nordborg
Re-organized the page (fewer lists). Fixes links. (diff)
1:32 PM DeveloperPage edited by Nicklas Nordborg
Fixing links (diff)
1:28 PM WikiStart edited by Nicklas Nordborg
Fixing links (diff)
1:22 PM Milestone MeV Launcher v1.8 completed
For more information see the [wiki:net.sf.basedb.mev MEV Launcher …
1:21 PM net.sf.basedb.mev edited by Nicklas Nordborg
Releasing MeV Launcher 1.8 (diff)
1:15 PM mev-launcher-1.8.tar.gz attached to net.sf.basedb.mev by Nicklas Nordborg
MeV Launcher 1.8
1:14 PM Changeset [1444] by Nicklas Nordborg
Tagging 'MeV Launcher 1.8'
1:14 PM Changeset [1443] by Nicklas Nordborg
Preparing 'MeV Launcher 1.8' release (again).
1:01 PM Changeset [1442] by Nicklas Nordborg
Preparing 'MeV Launcher 1.8' release.
12:53 PM Changeset [1441] by Nicklas Nordborg
Changes for future release 'FTP Server 1.3'
12:51 PM Milestone FTP Server v1.2 completed
For more information see the [wiki:net.sf.basedb.ftp FTP Server …
12:40 PM net.sf.basedb.ftp edited by Nicklas Nordborg
Releasing FTP Server 1.2 (diff)
12:36 PM base-ftpserver-1.2.tar.gz attached to net.sf.basedb.ftp by Nicklas Nordborg
BASE FTP Server Extension 1.2
12:36 PM Changeset [1440] by Nicklas Nordborg
Tagging 'FTP Server 1.2'
12:35 PM Changeset [1439] by Nicklas Nordborg
Preparing 'FTP Server 1.2' release.
11:58 AM net.sf.basedb.examplecode edited by Nicklas Nordborg
Changing component name (diff)
11:54 AM Changeset [1438] by Nicklas Nordborg
Changes for future release 'Web service examples 3.1'
11:52 AM Milestone Web services examples v3.0 completed
A web services client example for BASE. For more information see …
11:52 AM net.sf.basedb.examples.webservices edited by Nicklas Nordborg
Releasing 'Web service examples 3.0' (diff)
11:47 AM example-webservices-3.0.tar.gz attached to net.sf.basedb.examples.webservices by Nicklas Nordborg
Web service examples 3.0
11:47 AM Changeset [1437] by Nicklas Nordborg
Tagging 'Web services examples 3.0'.
11:46 AM Changeset [1436] by Nicklas Nordborg
Preparing 'Web services examples 3.0' release.
11:41 AM Changeset [1435] by Nicklas Nordborg
Changes for future release 'Example code 1.4'
11:38 AM Milestone Example code v1.3 completed
For more information see [wiki:net.sf.basedb.examplecode Example code …
11:36 AM net.sf.basedb.examples.plugins edited by Nicklas Nordborg
Deprecating the old plug-in examples (diff)
11:31 AM net.sf.basedb.examplecode edited by Nicklas Nordborg
Releasing 'Example code 1.3' (diff)
11:22 AM base-examples-1.3.tar.gz attached to net.sf.basedb.examplecode by Nicklas Nordborg
Example code 1.3
11:21 AM Changeset [1434] by Nicklas Nordborg
Tagging 'Example code 1.3'
11:20 AM Changeset [1433] by Nicklas Nordborg
Preparing 'Example code 1.3' release.

Oct 31, 2011:

1:27 PM Ticket #336 (Add bioplate test data) updated by Nicklas Nordborg
(In [1432]) References #336: Add bioplate test data Added a note …
1:27 PM Changeset [1432]
This is an empty revision for padding.
1:24 PM Ticket #336 (Add bioplate test data) closed by Nicklas Nordborg
fixed: (In [1431]) Fixes #336: Add bioplate test data
1:24 PM Changeset [1431] by Nicklas Nordborg
Fixes #336: Add bioplate test data
1:22 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1430]) References #330 Added some new checks before the …
1:22 PM Changeset [1430] by Martin Svensson
References #330 Added some new checks before the partitions are saved: …
1:20 PM Ticket #336 (Add bioplate test data) created by Nicklas Nordborg
Before all wizards in Reggie can be used, a fresh installation need to …
11:37 AM Ticket #335 (Use item subtypes - step 1) updated by Nicklas Nordborg
(In [1429]) References #335: Use item subtypes - step 1 Installation …
11:37 AM Changeset [1429] by Nicklas Nordborg
References #335: Use item subtypes - step 1 Installation wizard …
8:47 AM Ticket #335 (Use item subtypes - step 1) updated by Nicklas Nordborg
(In [1428]) References #335: Use item subtypes - step 1 New items are …
8:47 AM Changeset [1428] by Nicklas Nordborg
References #335: Use item subtypes - step 1 New items are now created …

Oct 28, 2011:

2:59 PM Ticket #335 (Use item subtypes - step 1) updated by Nicklas Nordborg
(In [1427]) References #335: Use item subtypes - step 1 The …
2:59 PM Changeset [1427] by Nicklas Nordborg
References #335: Use item subtypes - step 1 The installation wizard …
2:44 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1426]) References #330 Refactor of 'OtherPartitionComment' to …
2:44 PM Changeset [1426] by Martin Svensson
References #330 Refactor of 'OtherPartitionComment' to …
2:35 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1425]) References #330 The partition wizard is now fully …
2:35 PM Changeset [1425] by Martin Svensson
References #330 The partition wizard is now fully functional. Some …
1:05 PM Ticket #335 (Use item subtypes - step 1) updated by Nicklas Nordborg
Status changed
1:05 PM Ticket #334 (Use item subtypes - step 2) updated by Nicklas Nordborg
Milestone, Description, Summary changed
1:01 PM Ticket #335 (Use item subtypes - step 1) created by Nicklas Nordborg
See also #334. 1. The subtypes should be created by the installation …
12:54 PM Ticket #326 (Updates required for BASE 3 support) updated by Nicklas Nordborg
(In [1424]) References #326: Updates required for BASE 3 support This …
12:54 PM Changeset [1424] by Nicklas Nordborg
References #326: Updates required for BASE 3 support This should fix: …
12:41 PM Changeset [1423] by Nicklas Nordborg
Creating branch for Reggie 2.0 development.
12:40 PM Changeset [1422] by Nicklas Nordborg
Adding reggie/branches
12:33 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1421]) References #330 The regexp which finds unpartitioned …
12:33 PM Changeset [1421] by Martin Svensson
References #330 The regexp which finds unpartitioned tubes, has now …
11:43 AM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1420]) References #330 Selection-list: Tubes available for …
11:43 AM Changeset [1420] by Martin Svensson
References #330 Selection-list: Tubes available for partition does no …
9:49 AM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1419]) References #330 The partition wizard has partly got a new …
9:49 AM Changeset [1419] by Martin Svensson
References #330 The partition wizard has partly got a new look. Most …
8:20 AM Ticket #326 (Updates required for BASE 3 support) updated by Nicklas Nordborg
Status changed
8:20 AM Ticket #334 (Use item subtypes - step 2) updated by Nicklas Nordborg
Description changed
8:19 AM Ticket #326 (Updates required for BASE 3 support) updated by Nicklas Nordborg
Description, Summary changed
Due to time limitations I moved the item subtypes implementation to …
8:16 AM Ticket #334 (Use item subtypes - step 2) created by Nicklas Nordborg
See also #335. The first step defined subtypes and use them when …

Oct 26, 2011:

1:44 PM Ticket #313 (Updates required for BASE 3 support) updated by Nicklas Nordborg
(In [1418]) References #313: Updates required for BASE 3 support …
1:44 PM Changeset [1418] by Nicklas Nordborg
References #313: Updates required for BASE 3 support …
1:42 PM Ticket #327 (Update web service examples to BASE 3) closed by Nicklas Nordborg
fixed: (In [1417]) Fixes #327: Update web service examples to BASE 3
1:42 PM Changeset [1417] by Nicklas Nordborg
Fixes #327: Update web service examples to BASE 3
12:53 PM Ticket #327 (Update web service examples to BASE 3) reopened by Nicklas Nordborg
The SessionClient.login() method has changed, due to password …

Oct 20, 2011:

9:23 AM Ticket #328 (Switch to GPL3) closed by Nicklas Nordborg
fixed: (In [1416]) Fixes #328: Switch to GPL3
9:23 AM Changeset [1416] by Nicklas Nordborg
Fixes #328: Switch to GPL3
9:20 AM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1415]) References #317. Fixing a glitch that prevented the wizard …
9:20 AM Changeset [1415] by Martin Svensson
References #317. Fixing a glitch that prevented the wizard to proceed …
9:11 AM Ticket #328 (Switch to GPL3) updated by Nicklas Nordborg
Status changed
9:10 AM Ticket #333 (Update to MeV 4.7) closed by Nicklas Nordborg
fixed: (In [1414]) Fixes #333: Update to MeV 4.7
9:10 AM Changeset [1414] by Nicklas Nordborg
Fixes #333: Update to MeV 4.7
9:04 AM rnaseq-fpkm-loaded-as-tdms.png attached to Ticket #333 by Nicklas Nordborg
RNASeq FPKM data loaded with the TDMS file loader
9:04 AM rnaseq-file-loader.png attached to Ticket #333 by Nicklas Nordborg
The RNASeq file loader in MeV
9:01 AM Ticket #333 (Update to MeV 4.7) updated by Nicklas Nordborg
Status, Milestone changed
I have upgraded to 4.7.3 and the FPKM data can be loaded if we use the …

Oct 19, 2011:

2:07 PM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1413]) References #317. Cleaned up the code. Removed some …
2:07 PM Changeset [1413] by Martin Svensson
References #317. Cleaned up the code. Removed some unnecassary code …
2:05 PM Ticket #333 (Update to MeV 4.7) created by Nicklas Nordborg
They have added support for RNASeq data. Seems to be regular TDMS …
1:48 PM Ticket #332 (Update to FTP server lib 1.0.6) closed by Nicklas Nordborg
fixed: (In [1412]) Fixes #332: Update to FTP server lib 1.0.6
1:47 PM Changeset [1412] by Nicklas Nordborg
Fixes #332: Update to FTP server lib 1.0.6
1:32 PM Ticket #332 (Update to FTP server lib 1.0.6) updated by Nicklas Nordborg
Status changed
1:32 PM Ticket #332 (Update to FTP server lib 1.0.6) created by Nicklas Nordborg
Was released a couple of months ago and fixes a couple of FTP …
12:05 PM Ticket #331 (Updates required for BASE 3) closed by Nicklas Nordborg
fixed: Since there are other tickets (#267 and #268) for getting rid of …
11:33 AM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1411]) References #317. Inconsistency when comparing the sampling …
11:33 AM Changeset [1411] by Martin Svensson
References #317. Inconsistency when comparing the sampling date and …
10:34 AM Ticket #331 (Updates required for BASE 3) updated by Nicklas Nordborg
(In [1410]) References #331: Updates required for BASE 3 support The …
10:34 AM Changeset [1410] by Nicklas Nordborg
References #331: Updates required for BASE 3 support The code …
8:04 AM Ticket #331 (Updates required for BASE 3) updated by Nicklas Nordborg
Status, Owner changed
8:04 AM Ticket #331 (Updates required for BASE 3) created by Nicklas Nordborg
Need to make some packaging changes. Eg. Plugin definitions should be …

Oct 18, 2011:

4:02 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
Status changed
3:49 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1409]) References #330 The partition wizard is now ready for …
3:49 PM Changeset [1409] by Martin Svensson
References #330 The partition wizard is now ready for testing. No more …
2:58 PM PluginDownload edited by Nicklas Nordborg
Releasing web service examples 3.0-beta (diff)
2:56 PM net.sf.basedb.examples.webservices edited by Nicklas Nordborg
Releasing web service examples 3.0-beta (diff)
2:52 PM example-webservices-3.0-beta.tar.gz attached to net.sf.basedb.examples.webservices by Nicklas Nordborg
Web service examples 3.0-beta
2:51 PM Changeset [1408] by Nicklas Nordborg
Taggin web service examples 3.0-beta
2:50 PM Ticket #327 (Update web service examples to BASE 3) closed by Nicklas Nordborg
fixed: (In [1407]) Fixes #327: Update web service examples to BASE 3
2:50 PM Changeset [1407] by Nicklas Nordborg
Fixes #327: Update web service examples to BASE 3
2:49 PM net.sf.basedb.examples.webservices edited by Nicklas Nordborg
Preparing 3.0-beta release (diff)
2:19 PM Ticket #327 (Update web service examples to BASE 3) updated by Nicklas Nordborg
Status changed
9:05 AM Ticket #330 (Partition registration wizard) updated by Nicklas Nordborg
Milestone changed

Oct 17, 2011:

4:45 PM Ticket #330 (Partition registration wizard) updated by Martin Svensson
(In [1406]) References #330 The partition registration wizard is …
4:45 PM Changeset [1406] by Martin Svensson
References #330 The partition registration wizard is almost finished. …
4:42 PM Ticket #330 (Partition registration wizard) created by Martin Svensson

Oct 13, 2011:

8:57 AM PluginDownload edited by Nicklas Nordborg
Released FTP Server 1.2-beta (diff)
8:56 AM Ticket #315 (Switch to GPL3) closed by Nicklas Nordborg
fixed
8:55 AM net.sf.basedb.ftp edited by Nicklas Nordborg
Released FTP Server 1.2-beta (diff)
8:46 AM Changeset [1405] by Nicklas Nordborg
Tagging release FTP Server 1.2-beta
8:45 AM Changeset [1404] by Nicklas Nordborg
Preparing FTP Server 1.2-beta release

Oct 11, 2011:

1:24 PM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1403]) References #317 Added partition registration form.
1:24 PM Changeset [1403] by Martin Svensson
References #317 Added partition registration form.
1:22 PM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1402]) References #317. Updated the functionality when selecting …
1:22 PM Changeset [1402] by Martin Svensson
References #317. Updated the functionality when selecting box and …
1:20 PM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1401]) References #317. Updated the functionality when selecting …
1:20 PM Changeset [1401] by Martin Svensson
References #317. Updated the functionality when selecting box and …

Oct 10, 2011:

3:51 PM Ticket #317 (Specimen tube registration wizard) updated by Martin Svensson
(In [1400]) References #317. Updated the functionality when selecting …
3:51 PM Changeset [1400] by Martin Svensson
References #317. Updated the functionality when selecting box and …
3:32 PM Ticket #329 (Set active project when using FTP) closed by Nicklas Nordborg
fixed: (In [1399]) Fixes #329: Set active project when using FTP I have …
3:32 PM Changeset [1399] by Nicklas Nordborg
Fixes #329: Set active project when using FTP I have implemented the …
2:41 PM Ticket #329 (Set active project when using FTP) updated by Nicklas Nordborg
Status, Description changed

Oct 5, 2011:

3:51 PM Ticket #313 (Updates required for BASE 3 support) updated by Nicklas Nordborg
(In [1398]) References #313: Updates required for BASE 3 support …
3:51 PM Changeset [1398] by Nicklas Nordborg
References #313: Updates required for BASE 3 support Fixed build …
11:56 AM Ticket #329 (Set active project when using FTP) updated by Nicklas Nordborg
Description changed
Added idea to include a project name in the login.
8:14 AM Ticket #329 (Set active project when using FTP) created by Nicklas Nordborg
There is an issue with the FTP access to BASE. A user is only able to …
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