Timeline
Oct 1, 2009:
- 2:43 PM Ticket #250 (Add GSEA as an extension) updated by
- Because the GenePattern server doesn't have to be on the same server …
- 2:19 PM Ticket #250 (Add GSEA as an extension) updated by
- I read the README for GenePattern and understand that the idea is to …
- 8:00 AM Ticket #250 (Add GSEA as an extension) updated by
- This is the same license as for GenePattern and if GSEA is also a …
- 7:30 AM Ticket #250 (Add GSEA as an extension) updated by
- Maybe the route forward is to create export plug-ins that generate …
- 2:03 AM Ticket #250 (Add GSEA as an extension) updated by
- I'm not a lawyer, but to me the it seems like the license of GSEA is …
Sep 30, 2009:
- 2:43 PM Ticket #250 (Add GSEA as an extension) created by
- http://www.broadinstitute.org/gsea/ GSEA source is available and …
Sep 29, 2009:
- 3:07 PM Ticket #249 (net.sf.basedb.illumina: Version should autopropagate from build.xml to ...) updated by
- The same should happen for required version in at least …
- 3:06 PM Changeset [1175] by
- Updated release procedure. Fixed BASE version requirement.
- 2:31 PM se.lu.onk.IlluminaSNPNormalization edited by
- (diff)
- 2:19 PM Changeset [1174] by
- Preparing for future 1.5 release.
- 2:15 PM Ticket #115 (MeV launch returns a 'jsp' extension not a 'jnlp') updated by
-
Milestone changed
- 2:14 PM Ticket #236 (Reporter import of Illumina BGX file fails on section [controls]) updated by
-
Milestone changed
- 2:13 PM Milestone Illumina package v1.4 completed
- See Illumina plug-ins package for BASE …
- 2:13 PM Ticket #249 (net.sf.basedb.illumina: Version should autopropagate from build.xml to ...) created by
- At least when packaging.
- 2:11 PM net.sf.basedb.illumina edited by
- (diff)
- 2:10 PM Changeset [1173] by
- Tagging Illumina package 1.4 a second time
- 2:09 PM Changeset [1172] by
- Preparing release 1.4 once more
- 2:08 PM Changeset [1171] by
- Missed to change on version number in source code.
- 2:05 PM Ticket #205 (Change link README_PluginDetails to point to tags at next release) closed by
- fixed
- 2:05 PM net.sf.basedb.illumina edited by
- Releasing Illumina package v1.4 (diff)
- 1:58 PM Changeset [1170] by
- Tagging Illumina package 1.4
- 1:55 PM Changeset [1169] by
- Preparing release 1.4
- 11:53 AM Ticket #204 (Add option to include all available negative controls in detection ...) closed by
- fixed: (In [1168]) Fixes #204. Also improved docs.
- 11:53 AM Changeset [1168] by
- Fixes #204. Also improved docs.
Sep 28, 2009:
- 2:51 PM Changeset [1167] by
- Fixes #113. The code change in changeset:1114 is valid, fixed docs.
- 2:51 PM Ticket #113 (Add support for more variations of Illumina detection P-value calculations) closed by
- fixed: (In [1167]) Fixes #113. The code change in changeset:1114 is valid, …
- 2:51 PM Ticket #113 (Add support for more variations of Illumina detection P-value calculations) updated by
-
Description changed
- 1:59 PM Ticket #160 (wenni and the underlying super class should be abortable (se.lu.thep.WeNNI)) updated by
-
Milestone changed
- 1:58 PM Ticket #153 (Autoconf issues in se.lu.thep.WeNNI) updated by
-
Milestone changed
- 1:58 PM Ticket #248 (net.sf.basedb.illumina: The background correction plug-in should store ...) updated by
-
Milestone changed
- 1:57 PM Ticket #245 (net.sf.basedb.illumina: Detection P-value fails if there is no ...) updated by
-
Milestone changed
- 1:56 PM Ticket #204 (Add option to include all available negative controls in detection ...) updated by
-
Status, Owner, Milestone changed
- 1:31 PM Changeset [1166] by
- Fixes #235 and spelling.
- 1:31 PM Ticket #235 (Illumina package: Add instructions on how to remove 'Illumina' raw ...) closed by
- fixed: (In [1166]) Fixes #235 and spelling.
- 10:36 AM net.sf.basedb.illumina edited by
- Added link to trunk source tree. (diff)
- 10:30 AM Ticket #235 (Illumina package: Add instructions on how to remove 'Illumina' raw ...) updated by
-
Status, Owner, Milestone changed
Sep 25, 2009:
- 2:44 PM Ticket #248 (net.sf.basedb.illumina: The background correction plug-in should store ...) created by
- Now the assays are background corrected but it would be nice to easily …
- 2:10 PM Changeset [1165] by
- References #242: Implement "Save to BASE" function in the MeV gui The …
- 2:10 PM Ticket #242 (Implement "Save to BASE" function in the MeV gui) updated by
- (In [1165]) References #242: Implement "Save to BASE" function in the …
Sep 23, 2009:
- 11:38 AM PluginDownload edited by
- Updated BASE 1 download link. (diff)
- 11:08 AM Changeset [1164] by
- Fixes #247. A work around for the erroneous export from exportPlainMatrix.
- 11:08 AM Ticket #247 (net.sf.basedb.normalizers: qQuantileNormalization crashes when ...) closed by
- fixed: (In [1164]) Fixes #247. A work around for the erroneous export from …
- 11:03 AM Ticket #247 (net.sf.basedb.normalizers: qQuantileNormalization crashes when ...) updated by
-
Status changed
- 11:03 AM Ticket #183 (Change result storage of qQuantilNormalizer when BASE bioassay set ...) updated by
-
Description changed
- 11:02 AM Ticket #247 (net.sf.basedb.normalizers: qQuantileNormalization crashes when ...) created by
- When qQuantiler normalizes bioassay sets where assays have been …
Sep 22, 2009:
- 1:52 PM Ticket #242 (Implement "Save to BASE" function in the MeV gui) updated by
- (In [1163]) References #242: Implement "Save to BASE" function in the …
- 1:52 PM Changeset [1163] by
- References #242: Implement "Save to BASE" function in the MeV gui The …
- 9:05 AM Ticket #246 (Add MeV Analysis file to list of MIME types) closed by
- fixed: (In [1162]) Fixes #246: Add MeV Analysis file to list of MIME types
- 9:05 AM Changeset [1162] by
- Fixes #246: Add MeV Analysis file to list of MIME types
- 8:16 AM Ticket #246 (Add MeV Analysis file to list of MIME types) created by
- The analysis file is actually a zip file with a .anl extension.
Sep 18, 2009:
- 4:19 PM Ticket #204 (Add option to include all available negative controls in detection ...) updated by
-
Description changed
- 4:18 PM Ticket #245 (net.sf.basedb.illumina: Detection P-value fails if there is no ...) created by
- The plug-in returns with Status: Error: -1 The plug-in should return …
- 9:56 AM Ticket #242 (Implement "Save to BASE" function in the MeV gui) updated by
- I just found out one potential issue that limits the usability of this …
Sep 16, 2009:
- 9:00 AM Ticket #242 (Implement "Save to BASE" function in the MeV gui) updated by
-
Status changed
- 8:57 AM Changeset [1161] by
- Fixes #241: Add MeV Analysis file as a file type for bioassay sets …
- 8:57 AM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) closed by
- fixed: (In [1161]) Fixes #241: Add MeV Analysis file as a file type for …
Sep 15, 2009:
- 2:37 PM Ticket #243 (Create a sample MeV analysis file for testing purposes) closed by
- fixed: The test files (one tdms file and one analysis file) can be found in …
- 2:28 PM Changeset [1160] by
- References #241: Add MeV Analysis file as a file type for bioassay …
- 2:28 PM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
- (In [1160]) References #241: Add MeV Analysis file as a file type for …
- 1:22 PM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
- (In [1159]) References #241: Add MeV Analysis file as a file type for …
- 1:22 PM Changeset [1159] by
- References #241: Add MeV Analysis file as a file type for bioassay …
- 12:51 PM Changeset [1158] by
- Checking in the .classpath file for Eclipse since it is so boring to …
- 12:46 PM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
- (In [1157]) References #241: Add MeV Analysis file as a file type for …
- 12:46 PM Changeset [1157] by
- References #241: Add MeV Analysis file as a file type for bioassay …
Sep 14, 2009:
- 1:44 PM Changeset [1156] by
- References #241: Add MeV Analysis file as a file type for bioassay …
- 1:44 PM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
- (In [1156]) References #241: Add MeV Analysis file as a file type for …
Sep 11, 2009:
Sep 9, 2009:
- 10:51 AM Ticket #209 (Export of data to data repositories such as GEO and ArrayExpress) updated by
- A GEO export should probably be a two step process. One step to export …
- 10:48 AM Ticket #244 (Create a SAM plug-in) created by
- SAM is available in MeV but it would be nice to have it as an …
Sep 4, 2009:
- 9:53 AM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
- Bad news. It seem like MeV doesn't support opening analysis files from …
- 9:27 AM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
-
Status changed
- 9:08 AM Ticket #125 (MeV ... files are now supported (by the BASEcore) in the BASE analysis tree) closed by
- duplicate: Replaced by #241, #242 and #243.
- 9:07 AM Ticket #243 (Create a sample MeV analysis file for testing purposes) created by
- This is needed by #241 and #242. This ticket replaces #125.
- 9:04 AM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) updated by
-
Description changed
- 9:03 AM Ticket #242 (Implement "Save to BASE" function in the MeV gui) created by
- For background info see #241. We should investigate and try to …
- 9:00 AM Ticket #241 (Add MeV Analysis file as a file type for bioassay sets) created by
- The scenario is this. A users uses the MeV extension to export and …
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