Timeline
May 6, 2009:
- 5:05 PM Ticket #208 (Revert changeset:1045 when yat bug ...) updated by
-
Status changed
Reverting the change, yat 0.5.3 will be released soon. Now requiring … - 1:15 PM Changeset [1051] by
- Updated documentation on QuantileNormalization.
- 11:11 AM Changeset [1050] by
- Addresses #118. Non-logged input values are expected, geometric mean …
- 11:11 AM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [1050]) Addresses #118. Non-logged input values are expected, …
- 9:20 AM Changeset [1049] by
- Addresses #206. Last commit destroyed nan fixing in changeset:1045 for …
- 9:20 AM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) updated by
- (In [1049]) Addresses #206. Last commit destroyed nan fixing in …
May 5, 2009:
- 2:49 PM Ticket #194 (Default export file names should be more unique) updated by
- Replying to nicklas: > We are already protected against …
May 4, 2009:
- 12:05 PM Ticket #193 (Use one JNLP file for each pre-signed JAR file) updated by
-
Component changed
- 12:00 PM Ticket #212 (Add support for exporting CGH data to MeV) updated by
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Status changed
- 11:56 AM Ticket #212 (Add support for exporting CGH data to MeV) updated by
- I am thinking that maybe we should also consider moving the MeV TDMS …
- 11:52 AM Ticket #212 (Add support for exporting CGH data to MeV) updated by
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Milestone changed
- 11:50 AM Ticket #194 (Default export file names should be more unique) updated by
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Milestone changed
> Of course, the user may change the name manually to something … - 11:46 AM Changeset [1048] by
- Fixes #213: Cannot save MeV options It was caused by #203 and never …
- 11:46 AM Ticket #213 (Cannot save MeV options) closed by
- fixed: (In [1048]) Fixes #213: Cannot save MeV options It was caused by #203 …
- 11:44 AM Ticket #213 (Cannot save MeV options) updated by
-
Milestone changed
- 11:43 AM Ticket #203 (Change source files to UTF-8) updated by
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Milestone changed
- 11:38 AM Ticket #213 (Cannot save MeV options) updated by
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Milestone changed
- 11:38 AM Ticket #203 (Change source files to UTF-8) updated by
-
Milestone changed
Apr 30, 2009:
- 11:47 AM Ticket #213 (Cannot save MeV options) created by
- It is not possible to save options for MeV. The options dialog is …
Apr 28, 2009:
- 8:12 AM Ticket #212 (Add support for exporting CGH data to MeV) created by
- This is supposed to be straightforward the format is well-defined.
Apr 27, 2009:
- 4:25 PM Ticket #211 (Request: R/G quantile normalization) updated by
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Type changed
- 4:24 PM Ticket #211 (Request: R/G quantile normalization) created by
- Copied from the BASE users mailing list (April 27, 2009): Yannick …
- 3:32 PM Ticket #210 (net.sf.basedb.normalizers: Add proper 2-channel support to ...) updated by
-
Status changed
- 3:32 PM Ticket #210 (net.sf.basedb.normalizers: Add proper 2-channel support to ...) created by
- That is, keep our old favourite A \propto ln(ch1*ch2) the same value …
- 3:24 PM Changeset [1047] by
- Fixes #206. Missing values in reference now works. Each probe with no …
- 3:24 PM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) closed by
- fixed: (In [1047]) Fixes #206. Missing values in reference now works. Each …
- 1:14 PM Changeset [1046] by
- Debugging should be turned if in repository code.
- 1:08 PM Ticket #180 (Overview plot extensions for Illumina expression) updated by
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Description changed
- 11:57 AM Ticket #180 (Overview plot extensions for Illumina expression) updated by
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Description, Summary changed
- 11:31 AM Ticket #209 (Export of data to data repositories such as GEO and ArrayExpress) updated by
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Description changed
- 11:30 AM Ticket #209 (Export of data to data repositories such as GEO and ArrayExpress) created by
- We should create an export plug-in/extesion for the GEO repository, …
Apr 25, 2009:
- 1:29 AM Ticket #208 (Revert changeset:1045 when yat bug ...) updated by
- Just a minor comment: Either yat 0.5.3 should be required OR one …
Apr 24, 2009:
- 10:54 PM Ticket #208 (Revert changeset:1045 when yat bug ...) updated by
-
Description changed
- 10:54 PM Ticket #208 (Revert changeset:1045 when yat bug ...) created by
- Revert changeset:1045 when yat bug …
- 10:52 PM Changeset [1045] by
- Missing values now works with the implemented fix to avoid a bug in …
Apr 23, 2009:
- 7:09 PM Changeset [1044] by
- Addresses #118 and #206. If no assay data is given use the average of …
- 7:09 PM Tickets #118,206 batch updated by
- (In [1044]) Addresses #118 and #206. If no assay data is given use the …
- 6:55 PM Changeset [1043] by
- Addresses #118 and #206. This code produces the same result as the …
- 6:55 PM Tickets #118,206 batch updated by
- (In [1043]) Addresses #118 and #206. This code produces the same …
- 6:53 PM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) updated by
-
Summary changed
- 6:31 PM uk.ac.ebi.Tab2MageExporter edited by
- Fixed broken links. (diff)
- 10:14 AM Ticket #158 (README in PluginUtilities refers to AbstractRunBinary.jar) updated by
-
Status, Owner changed
- 10:11 AM Ticket #207 (Illumina DASL arrays) created by
- Make sure that DASL arrays can be used in BASE. Detection p-value …
Apr 20, 2009:
- 10:41 PM Changeset [1042] by
- Changed qqn package name.
- 10:37 PM Changeset [1041] by
- Changed qqn package name.
- 9:56 PM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) updated by
-
Status changed
- 9:56 PM Ticket #206 (net.sf.basedb.normalizers: Make qQuantileNormalization handle missing ...) created by
- 9:44 PM Changeset [1040] by
- Use getCurrentBioAssaySet in configuration phase.
Apr 16, 2009:
- 1:34 PM Ticket #160 (wenni and the underlying super class should be abortable (se.lu.thep.WeNNI)) updated by
- Abort functionality is supported by the super class …
- 1:31 PM Ticket #160 (wenni and the underlying super class should be abortable (se.lu.thep.WeNNI)) updated by
-
Status, Owner changed
- 1:30 PM Ticket #185 (External binary plugins should be interruptable from BASE.) updated by
-
Status changed
- 11:59 AM Ticket #190 (net.sf.basedb.normalizers: Add target that tries to build qQN if requested) closed by
- fixed: (In [1039]) Fixes #190. target c++ added.
- 11:59 AM Changeset [1039] by
- Fixes #190. target c++ added.
Apr 14, 2009:
- 3:56 PM Ticket #205 (Change link README_PluginDetails to point to tags at next release) created by
- The information in …
- 3:53 PM net.sf.basedb.illumina edited by
- Added link to detail information of the detection P-value plug-in. (diff)
- 3:47 PM Changeset [1038] by
- Added some detailed information on detection P-calue plug-in
- 3:42 PM Ticket #204 (Add option to include all available negative controls in detection ...) created by
- Add an user selectable option to use all in raw data available …
Apr 8, 2009:
- 5:23 PM Changeset [1037] by
- Removed duplicated code block.
- 12:07 AM Changeset [1036] by
- Fixes #197. Abort functionality implemented.
- 12:07 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) closed by
- fixed: (In [1036]) Fixes #197. Abort functionality implemented.
- 12:06 AM Changeset [1035] by
- Addresses #197. Abort functionality in place in abstract class.
- 12:06 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) updated by
- (In [1035]) Addresses #197. Abort functionality in place in abstract class.
Apr 7, 2009:
- 11:22 PM Changeset [1034] by
- Peter says: Use proper classes
- 8:27 AM Changeset [1033] by
- Fixes #200: Change source files to UTF-8
- 8:27 AM Ticket #200 (Change source files to UTF-8) closed by
- fixed: (In [1033]) Fixes #200: Change source files to UTF-8
- 8:25 AM Ticket #200 (Change source files to UTF-8) updated by
-
Status changed
- 8:24 AM Changeset [1032] by
- Fixes #202: Change source files to UTF-8
- 8:24 AM Ticket #202 (Change source files to UTF-8) closed by
- fixed: (In [1032]) Fixes #202: Change source files to UTF-8
- 8:15 AM Changeset [1031] by
- Joining Nicklas change to UTF-8 frenzy.
- 8:15 AM Ticket #202 (Change source files to UTF-8) updated by
-
Status changed
- 8:14 AM Changeset [1030] by
- Fixes #199: Change source files to UTF-8
- 8:14 AM Ticket #199 (Change source files to UTF-8) closed by
- fixed: (In [1030]) Fixes #199: Change source files to UTF-8
- 8:14 AM Changeset [1029] by
- Joining Nicklas change to UTF-8 frenzy.
- 8:12 AM Ticket #199 (Change source files to UTF-8) updated by
-
Status changed
- 8:10 AM Changeset [1028] by
- References #203: Change source files to UTF-8 Changed 'Hakkinen' to …
- 8:10 AM Ticket #203 (Change source files to UTF-8) updated by
- (In [1028]) References #203: Change source files to UTF-8 Changed …
- 8:08 AM Ticket #198 (Change source files to UTF-8) updated by
- (In [1027]) References #198: Change source files to UTF-8 It is safer …
- 8:08 AM Changeset [1027] by
- References #198: Change source files to UTF-8 It is safer to set …
- 8:06 AM Ticket #203 (Change source files to UTF-8) closed by
- fixed: (In [1026]) Fixes #203: Change source files to UTF-8
- 8:06 AM Changeset [1026] by
- Fixes #203: Change source files to UTF-8
- 8:00 AM Ticket #203 (Change source files to UTF-8) updated by
-
Status changed
- 7:59 AM Changeset [1025] by
- Fixes #201: Change source files to UTF-8
- 7:59 AM Ticket #201 (Change source files to UTF-8) closed by
- fixed: (In [1025]) Fixes #201: Change source files to UTF-8
- 7:57 AM Ticket #201 (Change source files to UTF-8) updated by
-
Status changed
- 7:56 AM Ticket #198 (Change source files to UTF-8) closed by
- fixed: (In [1024]) Fixes #198: Change source files to UTF-8
- 7:56 AM Changeset [1024] by
- Fixes #198: Change source files to UTF-8
- 7:51 AM Ticket #198 (Change source files to UTF-8) updated by
-
Status changed
- 12:35 AM Changeset [1023] by
- Addresses #197. In anticipation of abort functionality the underlying …
- 12:35 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) updated by
- (In [1023]) Addresses #197. In anticipation of abort functionality the …
Apr 6, 2009:
- 7:16 PM Ticket #184 (qQuantileNormalizer should update progress bar) closed by
- fixed: (In [1022]) Fixes #184. Progress bar is updated in the abstract class only.
- 7:16 PM Changeset [1022] by
- Fixes #184. Progress bar is updated in the abstract class only.
- 2:56 PM Ticket #203 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:56 PM Ticket #202 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:56 PM Ticket #201 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:55 PM Ticket #200 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:55 PM Ticket #199 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:55 PM Ticket #198 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 9:59 AM Ticket #189 (Add toolbar extension examples) closed by
- fixed: (In [1021]) Fixes #189: Add toolbar extension examples
- 9:59 AM Changeset [1021] by
- Fixes #189: Add toolbar extension examples
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