Timeline
Apr 8, 2009:
- 5:23 PM Changeset [1037] by
- Removed duplicated code block.
- 12:07 AM Changeset [1036] by
- Fixes #197. Abort functionality implemented.
- 12:07 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) closed by
- fixed: (In [1036]) Fixes #197. Abort functionality implemented.
- 12:06 AM Changeset [1035] by
- Addresses #197. Abort functionality in place in abstract class.
- 12:06 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) updated by
- (In [1035]) Addresses #197. Abort functionality in place in abstract class.
Apr 7, 2009:
- 11:22 PM Changeset [1034] by
- Peter says: Use proper classes
- 8:27 AM Changeset [1033] by
- Fixes #200: Change source files to UTF-8
- 8:27 AM Ticket #200 (Change source files to UTF-8) closed by
- fixed: (In [1033]) Fixes #200: Change source files to UTF-8
- 8:25 AM Ticket #200 (Change source files to UTF-8) updated by
-
Status changed
- 8:24 AM Changeset [1032] by
- Fixes #202: Change source files to UTF-8
- 8:24 AM Ticket #202 (Change source files to UTF-8) closed by
- fixed: (In [1032]) Fixes #202: Change source files to UTF-8
- 8:15 AM Changeset [1031] by
- Joining Nicklas change to UTF-8 frenzy.
- 8:15 AM Ticket #202 (Change source files to UTF-8) updated by
-
Status changed
- 8:14 AM Changeset [1030] by
- Fixes #199: Change source files to UTF-8
- 8:14 AM Ticket #199 (Change source files to UTF-8) closed by
- fixed: (In [1030]) Fixes #199: Change source files to UTF-8
- 8:14 AM Changeset [1029] by
- Joining Nicklas change to UTF-8 frenzy.
- 8:12 AM Ticket #199 (Change source files to UTF-8) updated by
-
Status changed
- 8:10 AM Changeset [1028] by
- References #203: Change source files to UTF-8 Changed 'Hakkinen' to …
- 8:10 AM Ticket #203 (Change source files to UTF-8) updated by
- (In [1028]) References #203: Change source files to UTF-8 Changed …
- 8:08 AM Ticket #198 (Change source files to UTF-8) updated by
- (In [1027]) References #198: Change source files to UTF-8 It is safer …
- 8:08 AM Changeset [1027] by
- References #198: Change source files to UTF-8 It is safer to set …
- 8:06 AM Ticket #203 (Change source files to UTF-8) closed by
- fixed: (In [1026]) Fixes #203: Change source files to UTF-8
- 8:06 AM Changeset [1026] by
- Fixes #203: Change source files to UTF-8
- 8:00 AM Ticket #203 (Change source files to UTF-8) updated by
-
Status changed
- 7:59 AM Changeset [1025] by
- Fixes #201: Change source files to UTF-8
- 7:59 AM Ticket #201 (Change source files to UTF-8) closed by
- fixed: (In [1025]) Fixes #201: Change source files to UTF-8
- 7:57 AM Ticket #201 (Change source files to UTF-8) updated by
-
Status changed
- 7:56 AM Ticket #198 (Change source files to UTF-8) closed by
- fixed: (In [1024]) Fixes #198: Change source files to UTF-8
- 7:56 AM Changeset [1024] by
- Fixes #198: Change source files to UTF-8
- 7:51 AM Ticket #198 (Change source files to UTF-8) updated by
-
Status changed
- 12:35 AM Changeset [1023] by
- Addresses #197. In anticipation of abort functionality the underlying …
- 12:35 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) updated by
- (In [1023]) Addresses #197. In anticipation of abort functionality the …
Apr 6, 2009:
- 7:16 PM Ticket #184 (qQuantileNormalizer should update progress bar) closed by
- fixed: (In [1022]) Fixes #184. Progress bar is updated in the abstract class only.
- 7:16 PM Changeset [1022] by
- Fixes #184. Progress bar is updated in the abstract class only.
- 2:56 PM Ticket #203 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:56 PM Ticket #202 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:56 PM Ticket #201 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:55 PM Ticket #200 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:55 PM Ticket #199 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 2:55 PM Ticket #198 (Change source files to UTF-8) created by
- See http://base.thep.lu.se/ticket/1290
- 9:59 AM Ticket #189 (Add toolbar extension examples) closed by
- fixed: (In [1021]) Fixes #189: Add toolbar extension examples
- 9:59 AM Changeset [1021] by
- Fixes #189: Add toolbar extension examples
Apr 3, 2009:
- 11:55 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) updated by
-
Status changed
- 11:55 AM Ticket #197 (net.sf.basedb.normalizers: Add abort functionaly to qQuantileNormalizers) created by
- The underlying abstract plug-in class must be changed as well.
- 11:53 AM Changeset [1020] by
- Addresses #118 and fixes #187.
- 11:53 AM Tickets #118,187 batch updated by
- fixed: (In [1020]) Addresses #118 and fixes #187.
- 11:52 AM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) updated by
-
Summary changed
- 11:42 AM Ticket #126 (Illumina SNP ... files are now supported (by the BASEcore) in the BASE ...) updated by
-
Description changed
- 11:41 AM Ticket #196 (Illumina methylation arrays ...) created by
- Illumina methylation arrays are 2-channel data (like Illumina SNP …
- 10:38 AM Ticket #195 (net.sf.basedb.normalizers: Normalizers should ask user for how to ...) created by
- The Average Normalization plug-in always use the geometric mean but …
- 9:14 AM Changeset [1019] by
- References #189: Add toolbar extension examples Added "Annotation …
- 9:14 AM Ticket #189 (Add toolbar extension examples) updated by
- (In [1019]) References #189: Add toolbar extension examples Added …
- 8:12 AM Ticket #189 (Add toolbar extension examples) updated by
-
Description changed
Apr 2, 2009:
Mar 31, 2009:
- 1:12 PM Ticket #194 (Default export file names should be more unique) created by
- I am using the brilliant MeV extension. BASE creates the TDMS file …
- 11:11 AM Changeset [1018] by
- Changes for future release 1.3
- 11:09 AM Milestone MEV Launcher v1.2 completed
- Bug fixes for MEV Launcher 1.1. See [wiki:net.sf.basedb.mev MEV …
- 11:09 AM net.sf.basedb.mev edited by
- Releasing MeV Launcher 1.2 (diff)
- 11:05 AM Changeset [1017] by
- Tagging MeV Launcher 1.2
- 11:04 AM Changeset [1016] by
- Preparing release of MeV Launcher 1.2
- 10:57 AM Ticket #192 (MeV unable to launch appplication ... class not found exception) closed by
- duplicate: Seems like this problem was fixed by #193.
- 9:03 AM Changeset [1015] by
- Fixes #193: Use one JNLP file for each pre-signed JAR file
- 9:03 AM Ticket #193 (Use one JNLP file for each pre-signed JAR file) closed by
- fixed: (In [1015]) Fixes #193: Use one JNLP file for each pre-signed JAR file
- 8:08 AM Ticket #193 (Use one JNLP file for each pre-signed JAR file) created by
- According to the JNLP specification all JAR:s that are referenced in a …
- 7:58 AM Ticket #192 (MeV unable to launch appplication ... class not found exception) updated by
- It doesn't work on the music Mac here either, but I get a different …
Mar 30, 2009:
- 6:40 PM Changeset [1014] by
- Fixes #191. Added standard options and also assay annotation data file …
- 6:40 PM Ticket #191 (net.sf.basedb.normalizers: qQN should support standard options ...) closed by
- fixed: (In [1014]) Fixes #191. Added standard options and also assay …
- 6:39 PM Ticket #191 (net.sf.basedb.normalizers: qQN should support standard options ...) updated by
-
Description changed
- 6:32 PM Ticket #192 (MeV unable to launch appplication ... class not found exception) updated by
- Replying to nicklas: > goose.jar and mail.jar are included …
- 6:17 PM Ticket #192 (MeV unable to launch appplication ... class not found exception) updated by
- goose.jar and mail.jar are included in the jnlp file generated by the …
- 3:24 PM Ticket #192 (MeV unable to launch appplication ... class not found exception) created by
- I cannot launch MeV with the BASE 2.11.0. I have pasted the stack …
- 10:48 AM PluginDownload edited by
- (diff)
- 10:47 AM Changeset [1013] by
- Preparing for future release 1.2
- 10:46 AM Milestone MEV Launcher v1.1 completed
- This release of the MEV Launcher is focused on upgrading to MeV 4.3. …
- 10:45 AM Ticket #162 (Upgrade to MeV 4.3) closed by
- fixed
- 10:45 AM net.sf.basedb.mev edited by
- Releasing MeV Launcher 1.1 (diff)
- 10:38 AM Changeset [1012] by
- Tagging version 1.1
- 10:37 AM Changeset [1011] by
- Preparing release 1.1
- 10:00 AM Changeset [1010] by
- References #162: Upgrade to MeV 4.3 Fixes some problems when starting …
- 10:00 AM Ticket #162 (Upgrade to MeV 4.3) updated by
- (In [1010]) References #162: Upgrade to MeV 4.3 Fixes some problems …
- 9:59 AM Ticket #191 (net.sf.basedb.normalizers: qQN should support standard options ...) updated by
-
Status changed
- 9:59 AM Ticket #191 (net.sf.basedb.normalizers: qQN should support standard options ...) created by
-
--versionand--help - 9:57 AM Changeset [1009] by
- Removed non-used configure options inherited from the WeNNI package.
- 9:56 AM Ticket #190 (net.sf.basedb.normalizers: Add target that tries to build qQN if requested) updated by
-
Status, Type changed
- 9:56 AM Ticket #190 (net.sf.basedb.normalizers: Add target that tries to build qQN if requested) created by
- Something like 'ant qQN' should try to create an qQN binary and place …
- 9:40 AM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) closed by
- fixed: As of changeset:1000 storeResult takes a SpotBatcher that is used to …
- 9:36 AM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) updated by
-
Status changed
- 8:31 AM Changeset [1008] by
- Clarified where the recommended install directory is located.
Mar 27, 2009:
- 10:59 PM Changeset [1007] by
- metadata is split into reporter and assay metadata. Added flags to …
- 10:57 PM Changeset [1006] by
- metadata is split into reporter and assay metadata.
- 9:51 PM Changeset [1005] by
- storeValues typo! Plural importantsvn diff
- 7:36 PM Changeset [1004] by
- Removed warning suppressions, clean up of code, added missing …
- 5:07 PM Changeset [1003] by
- Added support to select assays ... but the select is not used yet.
- 5:06 PM Changeset [1002] by
- Added support to optionally select assays.
- 3:48 PM Changeset [1001] by
- Minor changes to debug_option.
- 3:37 PM Changeset [1000] by
- storeResult interface change, some code moved to super class.
- 3:35 PM Changeset [999] by
- Restructured result storage.
- 11:05 AM Changeset [998] by
- Addresses #118 and #183. Moved export of data to an export method.
- 11:05 AM Tickets #118,183 batch updated by
- (In [998]) Addresses #118 and #183. Moved export of data to an export …
Mar 26, 2009:
- 4:27 PM Ticket #159 (Create a se.lu.onk.VirtualArray module) closed by
- fixed: Fixed as of changeset:997
- 4:22 PM se.lu.onk.VirtualArray created by
- First version of VirtualArray page
- 4:19 PM PluginDownload edited by
- Typos. (diff)
- 4:18 PM PluginDownload edited by
- Adding Virtual Array to donwload list. (diff)
- 4:14 PM Changeset [997] by
- Tagging version 1.1 of VirtualArray.
- 4:13 PM Changeset [996] by
- Preparing release 1.1 of VirtualArray.
- 11:14 AM Ticket #189 (Add toolbar extension examples) created by
- BASE 2.12 will add extension points in a lot of toobars. We should …
Mar 25, 2009:
- 8:48 AM Ticket #162 (Upgrade to MeV 4.3) updated by
- (In [995]) References #162: Upgrade to MeV 4.3 Got rid of hardcoded …
- 8:48 AM Changeset [995] by
- References #162: Upgrade to MeV 4.3 Got rid of hardcoded 'http' in …
- 8:46 AM Changeset [994] by
- References #162: Upgrade to MeV 4.3 Fixes a problem that prevented …
- 8:46 AM Ticket #162 (Upgrade to MeV 4.3) updated by
- (In [994]) References #162: Upgrade to MeV 4.3 Fixes a problem that …
Mar 24, 2009:
- 8:11 PM Ticket #188 (Add IGV as an extension similarly to MEV) updated by
- I have downloaded IGV but I have absolutely no clue what to do. Ok, I …
- 4:38 PM Ticket #188 (Add IGV as an extension similarly to MEV) updated by
- The source can be found under …
- 3:41 PM Ticket #188 (Add IGV as an extension similarly to MEV) updated by
- What license is IGV distributed under. I can't find anything on their …
- 3:15 PM Ticket #188 (Add IGV as an extension similarly to MEV) created by
- The IGV tool found at http://www.broad.mit.edu/igv/index.html is a …
Mar 16, 2009:
Mar 14, 2009:
- 3:07 PM Ticket #183 (Change result storage of qQuantilNormalizer when BASE bioassay set ...) updated by
-
Owner changed
- 3:07 PM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) updated by
-
Owner changed
- 3:06 PM Ticket #187 (qQuantileNormalizer should allow user to select the normaliztion ...) created by
- There are several ways to normalize the data. The user should select a …
- 3:03 PM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) updated by
-
Status changed
- 3:03 PM Ticket #186 (qQuantileNormalizer method storeResult must be reimplemented) created by
- Many things done in this method should move into the abstract base class.
- 3:02 PM Ticket #185 (External binary plugins should be interruptable from BASE.) created by
- 3:00 PM Ticket #184 (qQuantileNormalizer should update progress bar) updated by
-
Status, Owner changed
- 3:00 PM Ticket #184 (qQuantileNormalizer should update progress bar) created by
- 2:58 PM Changeset [993] by
- Addresses #118. First version of working qQuantileNormalizer.
- 2:58 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [993]) Addresses #118. First version of working qQuantileNormalizer.
- 2:52 PM net.sf.basedb.pluginutilties edited by
- (diff)
- 2:46 PM net.sf.basedb.pluginutilties edited by
- (diff)
- 2:43 PM Changeset [992] by
- Require BASE 2.5. Restructure build script.
- 1:50 PM Changeset [991] by
- Minor things.
- 1:50 PM Changeset [990] by
- Typo.
- 1:15 PM Ticket #183 (Change result storage of qQuantilNormalizer when BASE bioassay set ...) created by
- Relates to http://base.thep.lu.se/ticket/742 and …
- 11:55 AM Changeset [989] by
- Missing values from BASE are empty fields, need to define field …
Mar 13, 2009:
- 6:31 PM se.lu.onk.IlluminaSNPNormalization edited by
- (diff)
- 6:16 PM se.lu.onk.BAFsegmentation edited by
- (diff)
- 6:15 PM se.lu.onk.BAFsegmentation edited by
- (diff)
Mar 11, 2009:
- 11:02 AM Changeset [988] by
- Changes for future release 1.1
- 11:01 AM Milestone FTP Server v1.0 completed
- Implement an FTP Server as an extension to the web client. For more …
- 11:00 AM Ticket #114 (Implement FTP Server) updated
-
Milestone changed
Milestone FTP Server v1.0beta deleted - 10:57 AM PluginDownload edited by
- (diff)
- 10:53 AM net.sf.basedb.ftp edited by
- Releasing FTP Server 1.0 (diff)
- 10:42 AM Changeset [987] by
- Tagging release 1.0
- 10:41 AM Changeset [986] by
- Preparing release 1.0
- 10:01 AM Changeset [985] by
- Fixes #127: Update to final release of Apache Mina FTP server
- 10:01 AM Ticket #127 (Update to final release of Apache Mina FTP server) closed by
- fixed: (In [985]) Fixes #127: Update to final release of Apache Mina FTP server
- 9:09 AM Ticket #181 (Add MeV+R as a BASE extension?) updated by
- MeV+R seems to be a modified version of MeV. There are clearly …
Mar 10, 2009:
- 5:54 PM Ticket #182 (Illumina probes not found message should be documented) created by
- Extract information from below conversation and add it to the Illumina …
- 2:46 PM Ticket #181 (Add MeV+R as a BASE extension?) updated by
-
Description changed
Added line breaks to the abstract. - 2:45 PM Ticket #181 (Add MeV+R as a BASE extension?) created by
- It may be interesting to use MeV+R for visualizing and running R …
- 2:15 PM Ticket #180 (Overview plot extensions for Illumina expression) created by
- When support for overview plot extension are available in BASE, …
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