Timeline
Feb 27, 2009:
- 2:07 PM Changeset [984] by
- Added support to write to stdin of underlying binary ... added missing …
- 2:06 PM Changeset [983] by
- Added support to write to stdin of underlying binary.
- 12:33 PM Changeset [982] by
- References #178: The MeV launcher should use attached file instead of …
- 12:33 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) updated by
- (In [982]) References #178: The MeV launcher should use attached file …
- 11:16 AM Changeset [981] by
- Changed requirements to version 2.9 of BASE both in documentation and …
- 11:12 AM Changeset [980] by
- Added license file from MeV.
- 10:30 AM Changeset [979] by
- 2.9 BASE core API required since changeset:975
- 10:03 AM net.sf.basedb.mev edited by
- (diff)
- 9:45 AM Changeset [978] by
- Fixes #179: Add user-configurable option for JVM max memory
- 9:45 AM Ticket #179 (Add user-configurable option for JVM max memory) closed by
- fixed: (In [978]) Fixes #179: Add user-configurable option for JVM max memory
- 8:49 AM Ticket #179 (Add user-configurable option for JVM max memory) updated by
-
Status changed
Feb 26, 2009:
- 7:22 PM Ticket #179 (Add user-configurable option for JVM max memory) created by
- Currently, this is hard-coded into the generated JNLP file to 512 MB. …
- 2:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) updated by
-
Description changed
- 2:05 PM Changeset [977] by
- References #119 Corrected the calculation of relative rank between …
- 2:05 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [977]) References #119 Corrected the calculation of relative rank …
- 1:41 PM Ticket #162 (Upgrade to MeV 4.3) updated by
- (In [976]) References #162: Upgrade to MeV 4. This seems to work now. …
- 1:41 PM Changeset [976] by
- References #162: Upgrade to MeV 4. This seems to work now. I'll keep …
- 12:13 PM Changeset [975] by
- References #119 Some changes in the calculation-part. The plug-in runs …
- 12:13 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [975]) References #119 Some changes in the calculation-part. The …
- 10:48 AM Ticket #162 (Upgrade to MeV 4.3) updated by
-
Status changed
- 10:48 AM Changeset [974] by
- Fixes #178: The MeV launcher should use attached file instead of …
- 10:48 AM Ticket #178 (The MeV launcher should use attached file instead of running ...) closed by
- fixed: (In [974]) Fixes #178: The MeV launcher should use attached file …
Feb 25, 2009:
- 4:16 PM Changeset [973] by
- Addresses #118. Required yat version is 0.5 or later
- 4:16 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [973]) Addresses #118. Required yat version is 0.5 or later
- 3:59 PM Changeset [972] by
- Addresses #118. Load of java wrapper works but manual install of …
- 3:59 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [972]) Addresses #118. Load of java wrapper works but manual …
- 1:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) updated by
-
Status changed
- 1:45 PM Ticket #178 (The MeV launcher should use attached file instead of running ...) created by
- This is primarily a performance requirement. It can take a lot of time …
- 1:42 PM Ticket #162 (Upgrade to MeV 4.3) updated by
-
Milestone changed
- 1:42 PM Ticket #116 (Make the MEV launcher extension aware of bioassaysets that store data ...) updated by
-
Milestone changed
- 1:21 PM Changeset [971] by
- Added library-files to the ignore-list
- 9:43 AM Changeset [970] by
- Preparing for future release Illumina package v1.4
- 9:40 AM Milestone Illumina package v1.3 completed
- See Illumina plug-ins package for BASE …
- 9:39 AM Ticket #173 (Remove the float to integer conversions in beadstudio2ibs.pl when ...) closed by
- fixed: Wiki page is now updated.
- 9:36 AM net.sf.basedb.illumina edited by
- Releasing Illumina package 1.3 (diff)
- 9:12 AM Changeset [969] by
- Tagging release 1.3
- 9:07 AM Changeset [968] by
- Preparing release 1.3
Feb 23, 2009:
- 3:16 PM Changeset [967] by
- References #119 The plug-in is mostly ready for testing
- 3:16 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [967]) References #119 The plug-in is mostly ready for testing
Feb 18, 2009:
- 3:13 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [966]) References #119 Part of the normalization algorithm is …
- 3:13 PM Changeset [966] by
- References #119 Part of the normalization algorithm is implemented
- 8:55 AM Changeset [965] by
- Corrected flags summary output
Feb 17, 2009:
Feb 16, 2009:
- 10:21 PM Changeset [964] by
- Added support to add qQN source to the normalizer package.
- 9:33 PM Changeset [963] by
- Improved configure.ac and added option to disable check on required libs.
- 9:19 PM Changeset [962] by
- Added missing include statement.
Feb 13, 2009:
- 12:30 AM Changeset [961] by
- Refs #118 and #161. PluginUtilities download support. Added distclean …
- 12:30 AM Tickets #118,161 batch updated by
- (In [961]) Refs #118 and #161. PluginUtilities download support. Added …
Feb 12, 2009:
- 3:44 PM net.sf.basedb.normalizers edited by
- corrected query syntax -- see wiki:TracQuery#UsingTracLinks details (diff)
- 2:59 PM net.sf.basedb.normalizers edited by
- Fixed order in ticket query (diff)
- 2:46 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [960]) Refs #118. Changes suggested by the yat developer team.
- 2:46 PM Changeset [960] by
- Refs #118. Changes suggested by the yat developer team.
Feb 11, 2009:
- 8:51 AM Changeset [959] by
- Fixes #164 Improve documentation on how to upgrade the illumina …
- 8:51 AM Ticket #164 (Improve documentation on how to upgrade the illumina plug-in package) closed by
- fixed: (In [959]) Fixes #164 Improve documentation on how to upgrade the …
Feb 10, 2009:
- 2:19 PM Ticket #164 (Improve documentation on how to upgrade the illumina plug-in package) updated by
-
Status, Owner changed
- 10:53 AM Changeset [958] by
- Fixes #177 Add information about how to upgrade the normalization package.
- 10:53 AM Ticket #177 (Add information about how to upgrade the normalization package.) closed by
- fixed: (In [958]) Fixes #177 Add information about how to upgrade the …
- 8:52 AM Ticket #177 (Add information about how to upgrade the normalization package.) updated by
-
Status changed
Feb 9, 2009:
- 8:29 AM Changeset [957] by
- Fixes #175: Update the ant script to include contrib directory when …
- 8:29 AM Ticket #175 (Update the ant script to include contrib directory when creating package.) closed by
- fixed: (In [957]) Fixes #175: Update the ant script to include contrib …
Feb 8, 2009:
- 10:36 PM Changeset [956] by
- Removed stray character in configure.ac
- 10:18 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [955]) Refs #118. Changes suggested by the yat developer team.
- 10:18 PM Changeset [955] by
- Refs #118. Changes suggested by the yat developer team.
- 10:06 PM Changeset [954] by
- Refs #118. Changes suggested by the yat developer team.
- 10:06 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [954]) Refs #118. Changes suggested by the yat developer team.
- 10:02 PM Changeset [953] by
- Refs #118. Changes suggested by the yat developer team.
- 10:02 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [953]) Refs #118. Changes suggested by the yat developer team.
Feb 6, 2009:
- 11:58 AM se.lu.onk.BAFsegmentation edited by
- (diff)
- 11:55 AM se.lu.onk.BAFsegmentation edited by
- (diff)
- 10:47 AM Changeset [952] by
- Addresses #118. Added underlying C++ binary for the qQuantile.
- 10:47 AM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by
- (In [952]) Addresses #118. Added underlying C++ binary for the qQuantile.
- 10:10 AM Ticket #177 (Add information about how to upgrade the normalization package.) created by
- Explicitly state how an upgrade of the package is performed. If it is …
Feb 5, 2009:
- 4:40 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [951]) References #119 Added plugin-class. The plugin doesn't …
- 4:40 PM Changeset [951] by
- References #119 Added plugin-class. The plugin doesn't really do …
Feb 4, 2009:
- 4:35 PM Changeset [950] by
- References #119 Moved some method from the QuantileNormalization …
- 4:35 PM Ticket #119 (Create rank invariant normalizer) updated by
- (In [950]) References #119 Moved some method from the …
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