Timeline



Jan 15, 2009:

5:33 PM se.lu.onk.IlluminaSNPNormalization edited by markus
(diff)
11:10 AM Ticket #171 (IBS raw data importer should be able to handle floats in some columns) created by Jari Häkkinen
There are four columns in IBS files: Illumicode,N,Mean GRN,Dev GRN …
10:58 AM Ticket #170 (Result dialouge after batch importing several raw bioassays is ...) created by Jari Häkkinen
The plugin reports the number of files imported but it should say …

Jan 8, 2009:

4:18 PM Changeset [936] by Peter Johansson
add --force option in autoreconf call in bootstrap. The reason this is …

Jan 7, 2009:

9:50 AM Ticket #169 (Running two "New root bioassay set" jobs at the same time makes the ...) created by Nicklas Nordborg
Moved from http://base.thep.lu.se/ticket/1224. This is at least true …

Dec 21, 2008:

5:01 PM Changeset [935] by Jari Häkkinen
Removing braches.
4:59 PM se.lu.thep.affymetrix edited by Jari Häkkinen
Added link to repository. (diff)

Dec 18, 2008:

5:05 PM se.lu.onk.CGHDataDumper edited by Jari Häkkinen
(diff)
5:03 PM PluginDownload edited by Jari Häkkinen
(diff)
4:07 PM PluginDownload edited by Jari Häkkinen
Update normalization package information (diff)
12:57 PM Ticket #120 (Create a normalization plug-in package.) closed by Jari Häkkinen
fixed: Released working plugins in 1.0. The remaining tickets moved to 1.1
12:56 PM Milestone Normalization package v1.0 completed
For more information see the [wiki:net.sf.basedb.normalizers
12:55 PM net.sf.basedb.normalizers edited by Jari Häkkinen
(diff)
12:54 PM net.sf.basedb.normalizers edited by Jari Häkkinen
Added raw download tag to package link. (diff)
12:53 PM normalization-plugins-1.0.tar.gz.MD5 attached to net.sf.basedb.normalizers by Jari Häkkinen
12:53 PM normalization-plugins-1.0.tar.gz attached to net.sf.basedb.normalizers by Jari Häkkinen
12:52 PM net.sf.basedb.normalizers edited by Jari Häkkinen
Preparing 1.0 release of net.sf.basedb.normalizers package. (diff)
12:48 PM Ticket #168 (MD5 sum should be automatically generated for a package) created by Jari Häkkinen
12:44 PM Changeset [934] by Jari Häkkinen
Tagging version 1.0 of the net.sf.basedb.normalizers.
12:41 PM Changeset [933] by Jari Häkkinen
Corrected spelling
12:40 PM Changeset [932] by Jari Häkkinen
Addresses #120.
12:30 PM Changeset [931] by Jari Häkkinen
Addresses #120. Preparing 1.0 release.
12:29 PM net.sf.basedb.normalizers edited by Jari Häkkinen
Preparing 1.0 release of net.sf.basedb.normalizers package. (diff)
12:18 PM Changeset [930] by Jari Häkkinen
Typo
12:15 PM Changeset [929] by Jari Häkkinen
Removing CubicSplineNormalization? stub.
12:12 PM Changeset [928] by Jari Häkkinen
Fixes #167. Now using geometric mean
12:12 PM Ticket #167 ((net.sf.basedb.normalizers) Average normalizer should use geometric mean) closed by Jari Häkkinen
fixed: (In [928]) Fixes #167. Now using geometric mean
12:11 PM Changeset [927] by Jari Häkkinen
Refs #165.
11:13 AM Ticket #167 ((net.sf.basedb.normalizers) Average normalizer should use geometric mean) created by Jari Häkkinen
The current version uses the arithmetic mean.

Dec 17, 2008:

11:24 PM Ticket #166 ((net.sf.basedb.normalizers) Automatic progression of version to source ...) created by Jari Häkkinen
The version of the plug-in is hard coded in the java source
11:22 PM Ticket #163 (Rank invariant normalization has a sorting bug) closed by Jari Häkkinen
fixed: The fix passes my test now (I found another issue in my own test code).
11:20 PM Ticket #165 (Create quantile normalizer) closed by Jari Häkkinen
fixed: (In [926]) Fixes #165. Simply renamed rank invariant to quantile and …
11:20 PM Changeset [926] by Jari Häkkinen
Fixes #165. Simply renamed rank invariant to quantile and made …
10:37 PM Ticket #119 (Create rank invariant normalizer) reopened by Jari Häkkinen
The normalizer is not the rank invariant normalizer but rather …
10:15 PM Ticket #165 (Create quantile normalizer) created by Jari Häkkinen
9:06 PM Changeset [925] by Jari Häkkinen
Improved README.
9:05 PM Changeset [924] by Jari Häkkinen
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