Timeline



Sep 3, 2008:

2:48 PM Ticket #123 (Update BasePlug-ins' firstpage) closed by Martin Svensson
fixed
2:25 PM PluginSubmitReq edited by Martin Svensson
(diff)
2:16 PM WikiStart edited by Martin Svensson
Changed obsolete contact information (diff)
1:28 PM Ticket #119 (Create rank invariant normalizer) updated by Martin Svensson
(In [754]) References #119 Change to only create a row summary array …
1:28 PM Changeset [754] by Martin Svensson
References #119 Change to only create a row summary array if it has …
12:59 PM Changeset [753] by Martin Svensson
The SpotData2Ch objects are now compared by their ratio-value and not …
11:09 AM Ticket #119 (Create rank invariant normalizer) closed by Martin Svensson
fixed: (In [752]) Fixes #119 Create Rank Invariant normalization
11:09 AM Changeset [752] by Martin Svensson
Fixes #119 Create Rank Invariant normalization
8:07 AM net.sf.basedb.normalizers edited by Martin Svensson
(diff)

Sep 2, 2008:

4:38 PM Changeset [751] by Martin Svensson
References #119 Bug-fixing
4:38 PM Ticket #119 (Create rank invariant normalizer) updated by Martin Svensson
(In [751]) References #119 Bug-fixing
3:17 PM se.lu.onk.BAFsegmentation edited by markus
(diff)
3:16 PM se.lu.onk.BAFsegmentation edited by markus
(diff)

Sep 1, 2008:

4:15 PM Changeset [750] by Martin Svensson
References # 119 The normalization algorithm is almost done. Some …
2:08 PM se.lu.onk.popLowess edited by markus
(diff)
2:07 PM se.lu.onk.popLowess edited by markus
(diff)
2:03 PM se.lu.onk.BAFsegmentation edited by markus
(diff)

Aug 27, 2008:

4:41 PM Changeset [749] by Martin Svensson
References # 119 Started with the development of this plug-in. No …
2:41 PM PluginDownload edited by Jari Häkkinen
Moved Illumina package to new plug-in category 'Additional array … (diff)
11:26 AM Ticket #119 (Create rank invariant normalizer) updated by Martin Svensson
Status changed
11:07 AM Changeset [748] by Martin Svensson
Fixes #117 Create average nomralization plug-in.
11:07 AM Ticket #117 (Create average nomralization plug-in) closed by Martin Svensson
fixed: (In [748]) Fixes #117 Create average nomralization plug-in.
8:17 AM Changeset [747] by Martin Svensson
References #124 Corrected a few more copy-paste mistake.
8:17 AM Ticket #124 (files in Normalization package state they're are part of Illumina package) updated by Martin Svensson
(In [747]) References #124 Corrected a few more copy-paste mistake.
8:02 AM Changeset [746] by Martin Svensson
Fixes #124 Corrected a copy-paste mistake. Also added …
8:02 AM Ticket #124 (files in Normalization package state they're are part of Illumina package) closed by Martin Svensson
fixed: (In [746]) Fixes #124 Corrected a copy-paste mistake. Also added …

Aug 26, 2008:

4:37 PM Changeset [745] by Martin Svensson
References #117 Bug-fixing
4:37 PM Ticket #117 (Create average nomralization plug-in) updated by Martin Svensson
(In [745]) References #117 Bug-fixing
1:43 PM Ticket #124 (files in Normalization package state they're are part of Illumina package) created by Peter Johansson
For instance the README but I'd grep to check other files.
9:54 AM Ticket #117 (Create average nomralization plug-in) updated by Martin Svensson
(In [744]) References #117 Corrected a package name. Also changed the …
9:54 AM Changeset [744] by Martin Svensson
References #117 Corrected a package name. Also changed the way global …

Aug 25, 2008:

4:39 PM Changeset [743] by Martin Svensson
References #117 The normalization is now done. Nothing has been tested …
4:39 PM Ticket #117 (Create average nomralization plug-in) updated by Martin Svensson
(In [743]) References #117 The normalization is now done. Nothing has …
8:29 AM Ticket #117 (Create average nomralization plug-in) updated by Martin Svensson
(In [742]) References #117 Cleaned up and refactored the classes. The …
8:29 AM Changeset [742] by Martin Svensson
References #117 Cleaned up and refactored the classes. The Avg.norm. …

Aug 20, 2008:

1:06 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by Jari Häkkinen
Description changed
1:05 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by Jari Häkkinen
Status changed
1:05 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by Jari Häkkinen
Owner, Status changed
This normalizer is based on the work of Workman et al., …

Aug 13, 2008:

3:04 PM net.sf.basedb.normalizers edited by Martin Svensson
Updated links (diff)
2:51 PM net.sf.basedb.ftp edited by Nicklas Nordborg
(diff)
1:17 PM Ticket #114 (Implement FTP Server) updated by Nicklas Nordborg
(In [741]) References #114. Upgrading to 1.0.0-M2 release of Apache …
1:17 PM Changeset [741] by Nicklas Nordborg
References #114. Upgrading to 1.0.0-M2 release of Apache FTP server.

Aug 11, 2008:

4:15 PM net.sf.basedb.normalizers edited by Martin Svensson
(diff)
4:13 PM Changeset [740] by Martin Svensson
Change name of the package
2:51 PM PluginDownload edited by Martin Svensson
(diff)
2:50 PM net.sf.basedb.normalizers created by Martin Svensson
Changed name from *.normalizations to *.normalizers
2:42 PM Ticket #120 (Create a normalization plug-in package.) updated by Nicklas Nordborg
Owner, Component, Milestone changed

Aug 7, 2008:

2:43 PM Changeset [739] by Martin Svensson
Added new files to the project such as license file, library-files and …
9:12 AM Changeset [738] by Martin Svensson
Added BASE2WSClient.jar to svn:ignore
9:07 AM Changeset [737] by Martin Svensson
Fixes #121 BGX-importer should 0-pad Array_Address_ID if the BGX-file …
9:07 AM Ticket #121 (BGX-importer should 0-pad Array_Address_ID if the BGX-file doesn't ...) closed by Martin Svensson
fixed: (In [737]) Fixes #121 BGX-importer should 0-pad Array_Address_ID if …

Aug 6, 2008:

8:08 AM Ticket #123 (Update BasePlug-ins' firstpage) created by Martin Svensson
Some contact information are outdated.

Aug 5, 2008:

2:22 PM Ticket #121 (BGX-importer should 0-pad Array_Address_ID if the BGX-file doesn't ...) updated by Martin Svensson
Status, Owner changed
1:58 PM Ticket #122 (Add wiki-page for Normalization-package) closed by Martin Svensson
fixed: The page is created and there is a link from baseplugins/download to it.
1:55 PM Ticket #118 (Create qQuantile normalizer (aka cubic-spline normalizer)) updated by Martin Svensson
Status changed
1:55 PM Ticket #117 (Create average nomralization plug-in) updated by Martin Svensson
Status changed
1:54 PM Changeset [736] by Martin Svensson
Fixes #112. Changed the property validation when installing a data …
1:54 PM Ticket #112 (Illumina plug-in installer script fails (in some cases)) closed by Martin Svensson
fixed: (In [736]) Fixes #112. Changed the property validation when installing …
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