Timeline



May 1, 2008:

8:21 AM Changeset [687] by Jari Häkkinen
Recovering svndigest config file.

Apr 30, 2008:

3:04 PM Ticket #112 (Illumina plug-in installer script fails (in some cases)) updated by Jari Häkkinen
I should maybe mention that on my 2.7.0pre I have no problems but on a …
3:02 PM Ticket #112 (Illumina plug-in installer script fails (in some cases)) created by Jari Häkkinen
The plug-in installer fails when I try to rerun it with the below …
2:49 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
(In [686]) Addresses #110.
2:48 PM Changeset [686] by Jari Häkkinen
Addresses #110.
2:17 PM Changeset [685] by Jari Häkkinen
Improved text.
2:17 PM Changeset [684] by Jari Häkkinen
Fixes #104. Docs already fixed, added build check.
2:17 PM Ticket #104 (Add information that BASE2WSClient.jar is needed to compile the plug-ins) closed by Jari Häkkinen
fixed: (In [684]) Fixes #104. Docs already fixed, added build check.
10:09 AM Changeset [683] by Nicklas Nordborg
References #103. Updated README with latest information.
10:09 AM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [683]) References #103. Updated README with latest information.
9:56 AM Changeset [682] by Nicklas Nordborg
References #103. Moved all examples into a submenu.
9:56 AM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [682]) References #103. Moved all examples into a submenu.

Apr 29, 2008:

3:19 PM Changeset [681] by Jari Häkkinen
Addresses #110. Single sample Whole Genome BeadChips detection P-value …
3:19 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
(In [681]) Addresses #110. Single sample Whole Genome BeadChips
2:28 PM Ticket #111 (Update Illumina wiki pages and related documentation before release) created by Jari Häkkinen
2:26 PM Ticket #95 (Intensity calculator for Illumina expression data) updated by Jari Häkkinen
Milestone changed
2:26 PM Ticket #110 (Illumina detection P-value plug-in) updated by Jari Häkkinen
Status, Owner changed
2:26 PM Ticket #110 (Illumina detection P-value plug-in) created by Jari Häkkinen
Add a plug-in to calculate detection P-values for bead-sets. The …
2:22 PM Changeset [680] by Jari Häkkinen
Bumped version number to pre1.1

Apr 28, 2008:

8:09 PM Changeset [679] by Jari Häkkinen
Moving flush call to a more appropriate place.
4:23 PM Changeset [678] by Jari Häkkinen
No configurations for BeadSummaryImporter

Apr 22, 2008:

12:43 PM Changeset [677] by mbayer
tidied up -- minor changes
11:33 AM Changeset [676] by mbayer
removed deprecated code for raw bioassay creation and replaced with …
11:32 AM Changeset [675] by mbayer
default values for update existing parameter changed
11:31 AM Changeset [674] by mbayer
changed the way the zip file input stream is obtained back to how it was
11:30 AM Changeset [673] by mbayer
updated
11:29 AM Changeset [672] by mbayer
removed default values for most inputs
11:28 AM Changeset [671] by mbayer
added code for copying over the two additional required jar files …

Apr 18, 2008:

5:27 PM Changeset [670] by mbayer
- build script tidied up - new BASE libs added and existing ones …
2:26 PM Changeset [669] by Jari Häkkinen
Adding background correction plugin
2:13 PM Changeset [668] by Nicklas Nordborg
Set MIME type on README
2:09 PM Changeset [667] by Nicklas Nordborg
Changes related to http://base.thep.lu.se/changeset/4237
11:46 AM Ticket #109 (Add information to the wiki page on how to give feedback on the ...) updated by Jari Häkkinen
Summary changed
11:45 AM Ticket #109 (Add information to the wiki page on how to give feedback on the ...) created by Jari Häkkinen
11:44 AM Ticket #104 (Add information that BASE2WSClient.jar is needed to compile the plug-ins) updated by Jari Häkkinen
Status, Owner changed
11:27 AM Changeset [666] by Nicklas Nordborg
References #107: Move the MEV specific code from BASE Initial …
11:27 AM Ticket #107 (Move the MEV specific code from BASE) updated by Nicklas Nordborg
(In [666]) References #107: Move the MEV specific code from BASE …
11:12 AM net.sf.basedb.mev edited by Nicklas Nordborg
Updated description (diff)

Apr 17, 2008:

12:46 AM Changeset [665] by Jari Häkkinen
Added support for using configurable columns. Useful if BASE extra …

Apr 16, 2008:

10:53 PM Changeset [664] by Jari Häkkinen
Fixing problem with reading sections.
10:52 PM Changeset [663] by Jari Häkkinen
Fixing compiler errors.
10:50 PM Changeset [662] by Jari Häkkinen
Jar file name and class name wrong.
3:13 PM se.lu.onk.MergeBioAssay edited by Jari Häkkinen
Updated link to install doc. (diff)
1:41 PM se.lu.thep.WeNNI edited by Jari Häkkinen
Added information on how to check out WeNNI from svn. (diff)
1:35 PM se.lu.thep.WeNNI edited by Jari Häkkinen
Broken link (diff)
1:32 PM PluginDownload edited by Jari Häkkinen
Alphabetized plugin list. (diff)
1:30 PM PluginDownload edited by Jari Häkkinen
Moved WeNNI for BASE 2 to proper location in list. (diff)
1:28 PM wenni-0.6.tar.gz attached to se.lu.thep.WeNNI by Jari Häkkinen
1:27 PM wenni-0.5.tar.gz attached to se.lu.thep.WeNNI by Jari Häkkinen
12:13 PM PluginDownload edited by Jari Häkkinen
Moving WeNNI page. (diff)
12:08 PM se.lu.thep.WeNNI created by Jari Häkkinen
Moving WeNNI page.
12:06 PM PluginDownload edited by Jari Häkkinen
Added WeNNI to BASE 2 plug-in list. Preparing to change WeNNI wiki … (diff)
8:52 AM Ticket #107 (Move the MEV specific code from BASE) updated by Nicklas Nordborg
Status changed
8:44 AM net.sf.basedb.mev edited by Nicklas Nordborg
Fixed TODO list (diff)
8:43 AM Ticket #108 (Update information about MEV on the BASE-hacks site) created by Nicklas Nordborg
When the move has been completed the information on the BASE-hacks …
8:40 AM Ticket #107 (Move the MEV specific code from BASE) created by Nicklas Nordborg
See also: http://base.thep.lu.se/ticket/932
8:39 AM net.sf.basedb.mev created by Nicklas Nordborg
Added front page for the MEV Launcher extension

Apr 15, 2008:

2:28 PM Changeset [661] by Nicklas Nordborg
References #103: Create example extensions Added X-JSP example
2:28 PM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [661]) References #103: Create example extensions Added X-JSP example

Apr 14, 2008:

6:23 PM Changeset [660] by Jari Häkkinen
Alphabetized list and fixed indendation.
5:11 PM uk.ac.ebi.Tab2MageImporter edited by Jari Häkkinen
Updated links. (diff)
3:37 PM Changeset [659] by mbayer
fixed two minor errors in build script
3:33 PM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
Description changed
2:44 PM Changeset [658] by Nicklas Nordborg
References #103: Create example extensions Adding another image
2:44 PM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [658]) References #103: Create example extensions Adding another image
2:43 PM Changeset [657] by Nicklas Nordborg
Add svn.ignore for generated files.
2:42 PM Changeset [656] by Nicklas Nordborg
References #103: Create example extensions Adding a servlet example
2:42 PM Ticket #103 (Create example extensions) updated by Nicklas Nordborg
(In [656]) References #103: Create example extensions Adding a …
11:29 AM Changeset [655] by mbayer
deleted this jar file -- it does not get updated! need to use …

Apr 11, 2008:

5:40 PM Changeset [654] by mbayer
have made a number of changes relating to Affy support and fixed …
1:41 PM PluginDownload edited by Nicklas Nordborg
Added link to web services examples (diff)
1:38 PM Milestone Web services examples v2.6 completed
A web services client example for BASE 2. For more information see …
1:37 PM Ticket #106 (Move the example web services code from the BASE server) closed by Nicklas Nordborg
fixed
1:37 PM net.sf.basedb.examples.webservices edited by Nicklas Nordborg
Releasing web services examples v2.6 (diff)
1:34 PM example-webservices-2.6.tar.gz attached to net.sf.basedb.examples.webservices by Nicklas Nordborg
Web services example v2.6
1:33 PM Changeset [653] by Nicklas Nordborg
1:32 PM Changeset [652] by Nicklas Nordborg
Preparing release 2.6
1:27 PM net.sf.basedb.examples.webservices created by Nicklas Nordborg
Created front page for web services examples
1:19 PM Ticket #106 (Move the example web services code from the BASE server) updated by Nicklas Nordborg
(In [651]) References #106: Move the example web services code from …
1:19 PM Changeset [651] by Nicklas Nordborg
References #106: Move the example web services code from the BASE …
1:07 PM Ticket #106 (Move the example web services code from the BASE server) created by Nicklas Nordborg
See http://base.thep.lu.se/ticket/986
11:27 AM Changeset [650] by Nicklas Nordborg
Preparing for future release 2.X
11:25 AM Milestone Plugin examples v2.6 completed
This milestone is for the moving of the example code from the BASE …
11:25 AM Ticket #105 (Complete the move of the example code from BASE.) closed by Nicklas Nordborg
fixed
11:24 AM net.sf.basedb.examples.plugins edited by Nicklas Nordborg
Fixed download link (diff)
11:22 AM net.sf.basedb.examples.plugins edited by Nicklas Nordborg
Releasing plugin examples v2.6 (diff)
11:18 AM example-plugins-2.6.tar.gz attached to net.sf.basedb.examples.plugins by Nicklas Nordborg
Plugin examples v2.6
11:18 AM PluginDownload edited by Nicklas Nordborg
Adding example plugins (diff)
11:04 AM Changeset [649] by Nicklas Nordborg
Tagging release 2.6
11:03 AM Changeset [648] by Nicklas Nordborg
Preparing relase 2.6
9:10 AM Changeset [647] by Nicklas Nordborg
References #105: Complete the move of the example code from BASE. …
9:10 AM Ticket #105 (Complete the move of the example code from BASE.) updated by Nicklas Nordborg
(In [647]) References #105: Complete the move of the example code from …
8:56 AM Ticket #105 (Complete the move of the example code from BASE.) created by Nicklas Nordborg
See also: http://base.thep.lu.se/ticket/898
8:53 AM net.sf.basedb.examples.plugins created by Nicklas Nordborg
Added page about example plug-ins

Apr 10, 2008:

9:12 PM Changeset [646] by Jari Häkkinen
Fixing copyright lines.
2:29 PM Changeset [645] by Jari Häkkinen
Updated the BASE core jar requirements.
2:28 PM net.sf.basedb.illumina edited by Jari Häkkinen
(diff)
7:48 AM Ticket #104 (Add information that BASE2WSClient.jar is needed to compile the plug-ins) created by Nicklas Nordborg
Without this file you get the following compile error: […] The …

Apr 9, 2008:

4:54 PM Changeset [644] by mbayer
have added a progress bar to the userchoice3.jsp page to warn the user …
4:14 PM Changeset [643] by mbayer
code base simplified -- no longer supporting autogenerate option and …
12:33 PM Ticket #95 (Intensity calculator for Illumina expression data) updated by Jari Häkkinen
Status, Owner changed

Apr 4, 2008:

3:35 PM Changeset [642] by Nicklas Nordborg
Updated examples so they work with the latest changes in the BASE core.
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