Timeline



Mar 20, 2008:

8:27 AM Changeset [638] by Nicklas Nordborg
References #103: Create example extensions Made build process simpler.

Mar 19, 2008:

3:01 PM Changeset [637] by Nicklas Nordborg
References #103: Create example extensions ant package now also …
2:51 PM net.sf.basedb.examplecode edited by Nicklas Nordborg
(diff)
2:50 PM Changeset [636] by Nicklas Nordborg
References #103: Create example extensions First checkin of example …
2:28 PM Ticket #103 (Create example extensions) created by Nicklas Nordborg
The idea is to create some simple extensions that can be used by …
2:25 PM net.sf.basedb.examplecode created by Nicklas Nordborg
Created this page
11:14 AM Changeset [635] by Nicklas Nordborg
Added directory structure for extension examples

Mar 14, 2008:

5:07 PM net.sf.basedb.illumina edited by Peter Johansson
typo (diff)
12:50 PM RobotsTxt edited by Nicklas Nordborg
Disallow /changeset for robots (diff)
12:41 PM RobotsTxt edited by Nicklas Nordborg
Disallow robots (diff)
8:21 AM net.sf.basedb.illumina edited by Nicklas Nordborg
Change documentation links to point to the 1.0 release (diff)
8:18 AM Changeset [634] by Nicklas Nordborg
Added release procedure instructions.
7:48 AM SubversionCheckout edited by Nicklas Nordborg
Fixed incorrect subversion url:s (diff)

Mar 13, 2008:

1:59 PM Milestone Illumina package v1.0 completed
See Illumina plug-ins package for BASE
1:58 PM PluginDownload edited by Nicklas Nordborg
Removed link to webservices example since it is very outdated (diff)
1:57 PM PluginDownload edited by Nicklas Nordborg
Releasing version 1.0 (diff)
1:54 PM net.sf.basedb.illumina edited by Nicklas Nordborg
Releasing version 1.0 (diff)
1:44 PM illumina-plugins-1.0.tar.gz attached to net.sf.basedb.illumina by Nicklas Nordborg
Releasing version 1.0
1:36 PM Changeset [633] by Nicklas Nordborg
Changes for future release 1.1
1:36 PM Changeset [632] by Nicklas Nordborg
Tagging release 1.0
1:34 PM Changeset [631] by Nicklas Nordborg
References #91: Import Illumina Bead Summary(IBS) files as raw data …
1:33 PM Changeset [630] by Nicklas Nordborg
References #94: Import reporter annotations from bgx files Added …
12:05 PM net.sf.basedb.illumina edited by Nicklas Nordborg
(diff)
12:01 PM Ticket #89 (Installation program and documentation) closed by Nicklas Nordborg
fixed
12:01 PM Ticket #102 (Intensity calculator for Illumina SNP data) closed by Nicklas Nordborg
fixed
12:01 PM Changeset [629] by Nicklas Nordborg
References #89: Installation program and documentation Preparing for …
9:58 AM Changeset [628] by Nicklas Nordborg
References #89: Installation program and documentation Made the SNP …
9:57 AM Changeset [627] by Nicklas Nordborg
References #89: Installation program and documentation Added readme …
9:55 AM net.sf.basedb.illumina edited by Nicklas Nordborg
Update information with SNP plug-ins (diff)

Mar 12, 2008:

9:24 AM Changeset [626] by Nicklas Nordborg
References #89, #100: Added formulas for better SNP gui. Gtype = …

Mar 11, 2008:

2:36 PM Changeset [625] by Nicklas Nordborg
References #102: Intensity calculator for Illumina SNP data Added …

Mar 10, 2008:

2:46 PM Changeset [624] by Nicklas Nordborg
References #102: Intensity calculator for Illumina SNP data The main …
9:20 AM Changeset [623] by Martin Svensson
Fixes #100. Add Illumina SNP platform to the installation program
9:20 AM Ticket #100 (Add Illumina SNP platform to the installation program) closed by Martin Svensson
fixed: (In [623]) Fixes #100. Add Illumina SNP platform to the installation …
8:51 AM Changeset [622] by Martin Svensson
References #101comment:9 - fixes the listed items in the comment.
8:43 AM Changeset [621] by Nicklas Nordborg
Removed unused imports
7:57 AM Ticket #94 (Import reporter annotations from bgx files) closed by Nicklas Nordborg
fixed

Mar 7, 2008:

8:40 AM Ticket #93 (Illumina SNP validator and meta-data extractor) closed by Martin Svensson
fixed: (In [620]) Fixes #93 Added some more javadoc and improved the code …
8:40 AM Changeset [620] by Martin Svensson
Fixes #93 Added some more javadoc and improved the code format in a …

Mar 6, 2008:

4:44 PM Ticket #101 (Import plug-in for SNP raw data) closed by Martin Svensson
fixed: (In [619]) Fixes #101. The plug-in tested both from raw …
4:44 PM Changeset [619] by Martin Svensson
Fixes #101. The plug-in tested both from raw bioassay-listview and …

Mar 5, 2008:

4:09 PM Changeset [618] by Martin Svensson
References #101. The import is now done. Code needs to be cleaned up …

Mar 3, 2008:

4:50 PM Changeset [617] by Martin Svensson
References #101. Creating RawBioAssays? and split up files. The data …

Feb 29, 2008:

4:23 PM Ticket #99 (The tagging system of the repository should be changed) closed by Nicklas Nordborg
fixed
3:45 PM se.lu.thep.affymetrix edited by Peter Johansson
Made links to attachment relative. (diff)
2:01 PM se.lu.thep.affymetrix edited by Peter Johansson
svn repo has moved with new file structure (diff)
12:18 PM DeveloperPage edited by Nicklas Nordborg
New instructions regarding /tags, /trunk and /branches (diff)
12:12 PM net.sf.basedb.illumina edited by Nicklas Nordborg
New location for the subversion repository (diff)
11:37 AM Changeset [616] by Nicklas Nordborg
Deleting old locations (again)
11:35 AM Changeset [615] by Nicklas Nordborg
Deleting old branches (fourth try)
11:23 AM Changeset [614]
11:20 AM Changeset [613]
Deleting old branches (second try)
11:16 AM Changeset [612]
Deleting old locations
11:13 AM Changeset [611] by Nicklas Nordborg
Moving tab2mageimporter branch to the new location
11:11 AM Changeset [610] by Nicklas Nordborg
Moving affymetrix 0.7 tag to new location
11:11 AM Changeset [609] by Nicklas Nordborg
Moving affymetrix 0.6 tag to new location
11:09 AM Changeset [608] by Nicklas Nordborg
Moving perl/R webservices example project to new location
11:09 AM Changeset [607] by Nicklas Nordborg
Moving batchimporter project to new location
11:07 AM Changeset [606] by Nicklas Nordborg
Moving tab2mage project to new location
11:07 AM Changeset [605] by Nicklas Nordborg
Moving se.lu.thep.wenni project to new location
11:06 AM Changeset [604] by Nicklas Nordborg
Moving se.lu.thep.affymetrix project to new location
11:05 AM Changeset [603] by Nicklas Nordborg
Moving se.lu.onk project to new location
11:03 AM Changeset [602] by Nicklas Nordborg
Removed trunk folders that prevents moving the projects
11:00 AM Changeset [601] by Nicklas Nordborg
Moving Illumina project to new location (second try)
10:59 AM Changeset [600] by Nicklas Nordborg
Copied to incorrect directory
10:56 AM Changeset [599] by Nicklas Nordborg
Moving Illumina project to new location
10:53 AM Changeset [598] by Nicklas Nordborg
Preparing new directory structure

Feb 28, 2008:

12:36 AM Changeset [597] by Jari Häkkinen
Improved memory usage of NNIFileConverter.

Feb 26, 2008:

6:35 PM Changeset [596] by Jari Häkkinen
Removing obsolete member function declarations.
6:34 PM Changeset [595] by Jari Häkkinen
test should be the last directory visited for 'make'
3:24 PM Changeset [594] by Jari Häkkinen
Improved memory usage of BaseFileConverter?. Previous implementation …
3:14 PM Changeset [593] by Jari Häkkinen
Clarified that absolute path needed fof configure.

Feb 21, 2008:

4:44 PM Changeset [592] by Martin Svensson
References #101. Started on the plugin. A commit for the weekend.
11:40 AM Changeset [591] by Martin Svensson
References #93 Correct some comments and removed debug-code
11:36 AM Changeset [590] by Martin Svensson
References #93 You can now validate and extract meta-data from …

Feb 20, 2008:

3:49 PM Changeset [589] by Martin Svensson
References #100 Installation is now including SNP platform-variant and …
11:02 AM Ticket #91 (Import Illumina Bead Summary(IBS) files as raw data) closed by Nicklas Nordborg
fixed: (In [588]) Fixes #91: Import Illumina Bead Summary(IBS) files as raw data
11:02 AM Changeset [588] by Nicklas Nordborg
Fixes #91: Import Illumina Bead Summary(IBS) files as raw data
9:58 AM Ticket #102 (Intensity calculator for Illumina SNP data) created by Nicklas Nordborg
Since the raw data is stored in files, this plug-in needs to extract …
9:52 AM Ticket #101 (Import plug-in for SNP raw data) created by Nicklas Nordborg
SNP data comes from BeadStudio? with one file that contains several …
9:45 AM Ticket #100 (Add Illumina SNP platform to the installation program) created by Nicklas Nordborg
We now have a bit more information about the Illumina SNP platform. It …
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