Timeline



Jun 25, 2007:

11:17 AM Changeset [344] by Jari Häkkinen
Adding entries to ChangeLog.
9:52 AM Ticket #69 (DBControl bad code style, beware and fix it!) closed by Jari Häkkinen
fixed: (In [343]) Fixes #69. DBControl usage is improved.
9:52 AM Changeset [343] by Jari Häkkinen
Fixes #69. DBControl usage is improved.
9:43 AM Ticket #66 (The plier and rmaexpress plug-ins should make an graceous exit when ...) closed by Jari Häkkinen
worksforme: On the trunk heading towards BASE 2.4 and the latest version of the …
9:40 AM Ticket #69 (DBControl bad code style, beware and fix it!) updated by Jari Häkkinen
Status changed
9:40 AM Ticket #69 (DBControl bad code style, beware and fix it!) created by Jari Häkkinen
Read the below comments and go through the code and fix the issues! …

Jun 23, 2007:

11:58 PM Changeset [342] by Jari Häkkinen
Fixed spelling errors.

Jun 22, 2007:

9:31 PM se.lu.thep.affymetrix edited by Jari Häkkinen
Added todo list (diff)
9:28 PM Ticket #68 (Update the documentation to explain what should be done to get the ...) created by Jari Häkkinen
9:27 PM Ticket #67 (The plier and rmaexpress plug-ins does not work in a Microsoft enviornment) created by Jari Häkkinen
There are people running BASE in a Microsoft environment! The current …
9:24 PM Ticket #66 (The plier and rmaexpress plug-ins should make an graceous exit when ...) updated by Jari Häkkinen
Status, Description changed
9:24 PM Ticket #66 (The plier and rmaexpress plug-ins should make an graceous exit when ...) created by Jari Häkkinen
In 0.6 the plugin will exit with a stack trace like this: […]
6:08 PM se.lu.thep.affymetrix edited by Jari Häkkinen
Updated INSTALL and README links. (diff)

Jun 18, 2007:

11:15 AM WikiStart edited by Peter Johansson
(diff)

Jun 15, 2007:

9:45 AM WikiStart edited by Jari Häkkinen
Added login information for ticket submitters. (diff)

Jun 14, 2007:

10:30 AM Changeset [341] by Peter Johansson
update copyright

Jun 13, 2007:

6:39 PM Changeset [340] by Peter Johansson
fixes #65 version number in plugin_WeNNI.base is generated …
6:39 PM Ticket #65 (version number in BASE1 plugin is not updated automatically) closed by Peter Johansson
fixed: (In [340]) fixes #65 version number in plugin_WeNNI.base is generated …
5:14 PM Ticket #65 (version number in BASE1 plugin is not updated automatically) created by Peter Johansson
4:28 PM Changeset [339] by Jari Häkkinen
Added comment (recommendation) on using presence filter in BASE 1.
11:27 AM Changeset [338] by Peter Johansson
using ac macro fully rather than bashing

Jun 12, 2007:

7:01 PM DeveloperPage edited by Peter Johansson
(diff)
6:58 PM Ticket #61 (change structure of tags) closed by Peter Johansson
fixed
6:56 PM se.lu.thep.affymetrix edited by Peter Johansson
(diff)
6:55 PM SubversionCheckout edited by Peter Johansson
(diff)
6:53 PM Changeset [337] by Peter Johansson
reorganizing tag file structure refs #61
6:53 PM Ticket #61 (change structure of tags) updated by Peter Johansson
(In [337]) reorganizing tag file structure refs #61
6:11 PM Changeset [336] by Peter Johansson
adding javacflags in configure
3:11 PM Changeset [335] by Peter Johansson
slimming down files refs #50
3:11 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by Peter Johansson
(In [335]) slimming down files refs #50
11:18 AM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by Peter Johansson
(In [334]) first compilable version refs #50
11:18 AM Changeset [334] by Peter Johansson
first compilable version refs #50
9:32 AM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by Peter Johansson
(In [333]) improved Makefile.am refs #50
9:32 AM Changeset [333] by Peter Johansson
improved Makefile.am refs #50

Jun 11, 2007:

4:50 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by Peter Johansson
Status changed
4:49 PM Changeset [332] by Peter Johansson
class is BASE2 specific and should be in that directory
4:47 PM Changeset [331] by Peter Johansson
initial commit for abstract plugin support class for running external …
4:38 PM Changeset [330] by Peter Johansson
clean removes entire .build file structure
10:42 AM Ticket #64 (configure does not find basefile.h) updated by Jari Häkkinen
Status, Owner changed

Jun 8, 2007:

3:00 PM Changeset [329] by Peter Johansson
overriding autotools variable bindir, so bins are installed in …
3:00 PM Ticket #58 (--base-plugindir configure option) updated by Peter Johansson
(In [329]) overriding autotools variable bindir, so bins are installed …

Jun 7, 2007:

6:25 PM Ticket #59 (--with-gsl configure option) closed by Peter Johansson
fixed: (In [328]) cleaning up and adding --with-gsl option fixes #59
6:25 PM Changeset [328] by Peter Johansson
cleaning up and adding --with-gsl option fixes #59
5:10 PM Ticket #58 (--base-plugindir configure option) updated by Peter Johansson
What should be installed? My suggestion: stand-alone: only binaries …
5:03 PM Changeset [327] by Peter Johansson
refs #58 variable INSTALLDIR is set in configure and propagated out to …
5:03 PM Ticket #58 (--base-plugindir configure option) updated by Peter Johansson
(In [327]) refs #58 variable INSTALLDIR is set in configure and …
4:52 PM Ticket #59 (--with-gsl configure option) updated by Peter Johansson
Status changed

Jun 5, 2007:

9:07 AM Ticket #62 (make check does not work) closed by Peter Johansson
fixed
9:01 AM WikiStart edited by Peter Johansson
(diff)

Jun 1, 2007:

4:56 PM Ticket #58 (--base-plugindir configure option) updated by Peter Johansson
Status changed
4:55 PM Changeset [326] by Peter Johansson
fixes #325 make check works
4:37 PM Ticket #62 (make check does not work) updated by Peter Johansson
(In [325]) refs #62 make check now works in base1 mode
4:37 PM Changeset [325] by Peter Johansson
refs #62 make check now works in base1 mode

May 31, 2007:

7:21 PM Ticket #64 (configure does not find basefile.h) created by Peter Johansson
Even though configure does not find basefile.h the pre-processor …
7:16 PM Ticket #57 (--with-base configure option [default /usr/local/base]) closed by Peter Johansson
fixed: (In [324]) fixes #57. --enable-base=X where X is either base1 base2 or …
7:16 PM Changeset [324] by Peter Johansson
fixes #57. --enable-base=X where X is either base1 base2 or stand-alone.
1:38 PM Ticket #62 (make check does not work) updated by Peter Johansson
The test assumes we are in base1-mode. Specifically it uses the …
1:11 PM Ticket #62 (make check does not work) updated by Peter Johansson
Owner, Component changed
1:10 PM Ticket #63 (make distcheck should work) created by Peter Johansson
1:10 PM Ticket #62 (make check does not work) created by Peter Johansson
12:51 PM Changeset [323] by Peter Johansson
minor fixes
11:52 AM Changeset [322] by Peter Johansson
fixed typo
11:23 AM Changeset [321] by Peter Johansson
improved flags to local c++_tools

May 30, 2007:

12:15 AM Ticket #61 (change structure of tags) created by Peter Johansson
How? Add the package name to the path. What do you mean? Well, for …
12:07 AM DeveloperPage edited by Peter Johansson
(diff)

May 29, 2007:

11:30 PM WikiStart edited by Peter Johansson
(diff)
4:57 PM Ticket #51 (add configure options to WeNNI) closed by Peter Johansson
fixed: (In [320]) fixes #51. configure option state {base1, base2, …
4:57 PM Changeset [320] by Peter Johansson
fixes #51. configure option state {base1, base2, stand-alone} where …
4:55 PM Ticket #57 (--with-base configure option [default /usr/local/base]) updated by Peter Johansson
This flag is used to know where to find plug-in support files, such as …
4:44 PM Ticket #58 (--base-plugindir configure option) updated by Peter Johansson
Description, Summary changed
4:37 PM Ticket #60 (explain how to run wenni (base1 version) against a base_devkit) created by Peter Johansson
3:54 PM Ticket #59 (--with-gsl configure option) created by Peter Johansson
3:53 PM Ticket #58 (--base-plugindir configure option) created by Peter Johansson
In BASE2 default is <--with-base>/www/plugins Files are installed in …
3:52 PM Ticket #57 (--with-base configure option [default /usr/local/base]) created by Peter Johansson
12:09 PM Ticket #49 (Rename wiki:onk.lu.se.ZTest to wiki:se.lu.onk.ZTest) closed by Jari Häkkinen
fixed
12:09 PM DeveloperPage edited by Jari Häkkinen
(diff)
12:07 PM DeveloperPage edited by Jari Häkkinen
Renaming onk.lu.se.ZTest (diff)
12:05 PM PluginDownload edited by Jari Häkkinen
Renaming onk.lu.se.ZTest (diff)
12:04 PM poolSD.png attached to se.lu.onk.ZTest by Jari Häkkinen
12:04 PM zscore.png attached to se.lu.onk.ZTest by Jari Häkkinen
12:03 PM probability.png attached to se.lu.onk.ZTest by Jari Häkkinen
12:03 PM normsdist.2.png attached to se.lu.onk.ZTest by Jari Häkkinen
12:03 PM normsdist.png attached to se.lu.onk.ZTest by Jari Häkkinen
11:59 AM se.lu.onk.ZTest created by Jari Häkkinen
Renaming onk.lu.se.ZTest
1:36 AM Ticket #51 (add configure options to WeNNI) updated by Peter Johansson
It is more logical to have * ./configure --enable-base1 -- enable …
1:17 AM Changeset [319] by Peter Johansson
empty WeNNI.java and some minor changes in configure.ac stolen from yat

May 28, 2007:

11:37 PM Ticket #56 (rename component onk.lu.se to be se.lu.onk -- split into several packages) created by Peter Johansson
I can see no reason why this component should be an outlier. The …
11:33 PM Ticket #55 (update ChangeLog) updated by Peter Johansson
Description changed
11:33 PM Ticket #55 (update ChangeLog) created by Peter Johansson
and make it look good in wiki
11:32 PM Ticket #54 (update README) created by Peter Johansson
and make it look good in wiki
11:32 PM Ticket #53 (update INSTALL) created by Peter Johansson
and make it look good in wiki
11:30 PM Changeset [318] by Peter Johansson
adding Makefile.am for base2 dir
11:27 PM Changeset [317] by Peter Johansson
wikized README et al and corrected configure.ac
11:18 PM Changeset [316] by Peter Johansson
replaced todo items with a reference to todo list in wiki
11:14 PM Ticket #52 (Add educational material and use cases.) created by Peter Johansson
11:10 PM Changeset [315] by Peter Johansson
changed structure again. NNIFileConverter is moved to bin, which means …
10:46 PM Changeset [314] by Peter Johansson
updating copyrights in modified files and added some Makefile.am
10:35 PM Changeset [313] by Peter Johansson
new file structure for BASE2
9:55 PM Ticket #48 (Rename wiki:WeNNI to wiki:se.lu.thep.wenni) closed by Peter Johansson
invalid: Published homepage is http://lev.thep.lu.se/trac/baseplugins/wiki/WeNNI
9:17 PM Ticket #48 (Rename wiki:WeNNI to wiki:se.lu.thep.wenni) updated by Jari Häkkinen
Check publication before doing this change.
8:02 PM Ticket #51 (add configure options to WeNNI) created by Peter Johansson
Thre cases should be supported * ./configure --stand-alone -- skip …
7:55 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) created by Peter Johansson
6:23 PM Changeset [312] by Peter Johansson
removed imports not needed and added dependency in Makefile. Inherited …
5:42 PM Changeset [311] by Peter Johansson
creating a base class for plier and rma
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