Timeline
Jun 12, 2007:
- 7:01 PM DeveloperPage edited by
- (diff)
- 6:58 PM Ticket #61 (change structure of tags) closed by
- fixed
- 6:56 PM se.lu.thep.affymetrix edited by
- (diff)
- 6:55 PM SubversionCheckout edited by
- (diff)
- 6:53 PM Changeset [337] by
- reorganizing tag file structure refs #61
- 6:53 PM Ticket #61 (change structure of tags) updated by
- (In [337]) reorganizing tag file structure refs #61
- 6:11 PM Changeset [336] by
- adding javacflags in configure
- 3:11 PM Changeset [335] by
- slimming down files refs #50
- 3:11 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by
- (In [335]) slimming down files refs #50
- 11:18 AM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by
- (In [334]) first compilable version refs #50
- 11:18 AM Changeset [334] by
- first compilable version refs #50
- 9:32 AM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by
- (In [333]) improved Makefile.am refs #50
- 9:32 AM Changeset [333] by
- improved Makefile.am refs #50
Jun 11, 2007:
- 4:50 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) updated by
-
Status changed
- 4:49 PM Changeset [332] by
- class is BASE2 specific and should be in that directory
- 4:47 PM Changeset [331] by
- initial commit for abstract plugin support class for running external …
- 4:38 PM Changeset [330] by
- clean removes entire .build file structure
- 10:42 AM Ticket #64 (configure does not find basefile.h) updated by
-
Status, Owner changed
Jun 8, 2007:
- 3:00 PM Changeset [329] by
- overriding autotools variable bindir, so bins are installed in …
- 3:00 PM Ticket #58 (--base-plugindir configure option) updated by
- (In [329]) overriding autotools variable bindir, so bins are installed …
Jun 7, 2007:
- 6:25 PM Ticket #59 (--with-gsl configure option) closed by
- fixed: (In [328]) cleaning up and adding --with-gsl option fixes #59
- 6:25 PM Changeset [328] by
- cleaning up and adding --with-gsl option fixes #59
- 5:10 PM Ticket #58 (--base-plugindir configure option) updated by
- What should be installed? My suggestion: stand-alone: only binaries …
- 5:03 PM Changeset [327] by
- refs #58 variable INSTALLDIR is set in configure and propagated out to …
- 5:03 PM Ticket #58 (--base-plugindir configure option) updated by
- (In [327]) refs #58 variable INSTALLDIR is set in configure and …
- 4:52 PM Ticket #59 (--with-gsl configure option) updated by
-
Status changed
Jun 5, 2007:
Jun 1, 2007:
- 4:56 PM Ticket #58 (--base-plugindir configure option) updated by
-
Status changed
- 4:55 PM Changeset [326] by
- fixes #325 make check works
- 4:37 PM Ticket #62 (make check does not work) updated by
- (In [325]) refs #62 make check now works in base1 mode
- 4:37 PM Changeset [325] by
- refs #62 make check now works in base1 mode
May 31, 2007:
- 7:21 PM Ticket #64 (configure does not find basefile.h) created by
- Even though configure does not find basefile.h the pre-processor …
- 7:16 PM Ticket #57 (--with-base configure option [default /usr/local/base]) closed by
- fixed: (In [324]) fixes #57. --enable-base=X where X is either base1 base2 or …
- 7:16 PM Changeset [324] by
- fixes #57. --enable-base=X where X is either base1 base2 or stand-alone.
- 1:38 PM Ticket #62 (make check does not work) updated by
- The test assumes we are in base1-mode. Specifically it uses the …
- 1:11 PM Ticket #62 (make check does not work) updated by
-
Owner, Component changed
- 1:10 PM Ticket #63 (make distcheck should work) created by
- 1:10 PM Ticket #62 (make check does not work) created by
- 12:51 PM Changeset [323] by
- minor fixes
- 11:52 AM Changeset [322] by
- fixed typo
- 11:23 AM Changeset [321] by
- improved flags to local c++_tools
May 30, 2007:
- 12:15 AM Ticket #61 (change structure of tags) created by
- How? Add the package name to the path. What do you mean? Well, for …
- 12:07 AM DeveloperPage edited by
- (diff)
May 29, 2007:
- 11:30 PM WikiStart edited by
- (diff)
- 4:57 PM Ticket #51 (add configure options to WeNNI) closed by
- fixed: (In [320]) fixes #51. configure option state {base1, base2, …
- 4:57 PM Changeset [320] by
- fixes #51. configure option state {base1, base2, stand-alone} where …
- 4:55 PM Ticket #57 (--with-base configure option [default /usr/local/base]) updated by
- This flag is used to know where to find plug-in support files, such as …
- 4:44 PM Ticket #58 (--base-plugindir configure option) updated by
-
Description, Summary changed
- 4:37 PM Ticket #60 (explain how to run wenni (base1 version) against a base_devkit) created by
- 3:54 PM Ticket #59 (--with-gsl configure option) created by
- 3:53 PM Ticket #58 (--base-plugindir configure option) created by
- In BASE2 default is <--with-base>/www/plugins Files are installed in …
- 3:52 PM Ticket #57 (--with-base configure option [default /usr/local/base]) created by
- 12:09 PM Ticket #49 (Rename wiki:onk.lu.se.ZTest to wiki:se.lu.onk.ZTest) closed by
- fixed
- 12:09 PM DeveloperPage edited by
- (diff)
- 12:07 PM DeveloperPage edited by
- Renaming onk.lu.se.ZTest (diff)
- 12:05 PM PluginDownload edited by
- Renaming onk.lu.se.ZTest (diff)
- 11:59 AM se.lu.onk.ZTest created by
- Renaming onk.lu.se.ZTest
- 1:36 AM Ticket #51 (add configure options to WeNNI) updated by
-
It is more logical to have
*
./configure --enable-base1-- enable … - 1:17 AM Changeset [319] by
- empty WeNNI.java and some minor changes in configure.ac stolen from yat
May 28, 2007:
- 11:37 PM Ticket #56 (rename component onk.lu.se to be se.lu.onk -- split into several packages) created by
- I can see no reason why this component should be an outlier. The …
- 11:33 PM Ticket #55 (update ChangeLog) updated by
-
Description changed
- 11:33 PM Ticket #55 (update ChangeLog) created by
- and make it look good in wiki
- 11:32 PM Ticket #54 (update README) created by
- and make it look good in wiki
- 11:32 PM Ticket #53 (update INSTALL) created by
- and make it look good in wiki
- 11:30 PM Changeset [318] by
- adding Makefile.am for base2 dir
- 11:27 PM Changeset [317] by
- wikized README et al and corrected configure.ac
- 11:18 PM Changeset [316] by
- replaced todo items with a reference to todo list in wiki
- 11:14 PM Ticket #52 (Add educational material and use cases.) created by
- 11:10 PM Changeset [315] by
- changed structure again. NNIFileConverter is moved to bin, which means …
- 10:46 PM Changeset [314] by
- updating copyrights in modified files and added some Makefile.am
- 10:35 PM Changeset [313] by
- new file structure for BASE2
- 9:55 PM Ticket #48 (Rename wiki:WeNNI to wiki:se.lu.thep.wenni) closed by
- invalid: Published homepage is http://lev.thep.lu.se/trac/baseplugins/wiki/WeNNI
- 9:17 PM Ticket #48 (Rename wiki:WeNNI to wiki:se.lu.thep.wenni) updated by
- Check publication before doing this change.
- 8:02 PM Ticket #51 (add configure options to WeNNI) created by
-
Thre cases should be supported
*
./configure --stand-alone-- skip … - 7:55 PM Ticket #50 (create a BASE2 plug-in for se.lu.thep.WeNNI) created by
- 6:23 PM Changeset [312] by
- removed imports not needed and added dependency in Makefile. Inherited …
- 5:42 PM Changeset [311] by
- creating a base class for plier and rma
May 25, 2007:
- 1:27 PM Changeset [310] by
- oops now we can compile again. sorry about that
- 12:59 PM Changeset [309] by
- changed name of the package in copyrights. It is no longer RMAExpress
May 24, 2007:
- 7:24 PM Changeset [308] by
- bumping version number
- 6:47 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) closed by
- fixed
- 6:47 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- closed in this release …
- 5:39 PM Ticket #46 (RMAExpress wiki page) closed by
- fixed
- 5:39 PM Ticket #49 (Rename wiki:onk.lu.se.ZTest to wiki:se.lu.onk.ZTest) updated by
-
Status changed
- 5:39 PM Ticket #48 (Rename wiki:WeNNI to wiki:se.lu.thep.wenni) updated by
-
Status changed
- 5:39 PM Ticket #49 (Rename wiki:onk.lu.se.ZTest to wiki:se.lu.onk.ZTest) created by
- 5:37 PM Ticket #48 (Rename wiki:WeNNI to wiki:se.lu.thep.wenni) created by
- 5:36 PM PluginDownload edited by
- Renaming onk.lu.se.MergBioAssay (diff)
- 5:33 PM se.lu.onk.MergeBioAssay created by
- Renaming onk.lu.se.MergBioAssay
- 5:25 PM PluginDownload edited by
- Renaming onk.lu.se.Smooth (diff)
- 5:23 PM se.lu.onk.Smooth created by
- Renaming onk.lu.se.Smooth
- 5:18 PM PluginDownload edited by
- Renaming BatchDataImporter (diff)
- 5:16 PM uk.ac.scri.batchimporter created by
- Renaming BatchDataImporter
- 5:11 PM SubversionCheckout edited by
- (diff)
- 5:09 PM PluginDownload edited by
- Renaming WebServices page (diff)
- 5:03 PM se.lu.thep.affymetrix edited by
- added info on how to check out tagged release (diff)
- 4:59 PM PluginDownload edited by
- affymetrix 0.6 release. (diff)
- 4:49 PM DeveloperPage edited by
- (diff)
- 4:47 PM SubversionCheckout edited by
- (diff)
- 4:47 PM se.lu.thep.affymetrix edited by
- changed doc links to tagged version (diff)
- 4:40 PM se.lu.thep.affymetrix edited by
- (diff)
- 4:37 PM se.lu.thep.affymetrix edited by
- New release to download. (diff)
- 4:28 PM Changeset [307] by
- Tagging se.lu.thep.affymetrix release 0.6
- 4:26 PM Changeset [306] by
- Setting up tagging hierarchy.
- 4:18 PM Changeset [305] by
- Added fixed items to list.
- 4:11 PM Changeset [304] by
- Bumped version number.
- 4:10 PM Changeset [303] by
- Improved speed.
- 4:07 PM Changeset [302] by
- changed to log2 base
- 4:05 PM Changeset [301] by
- Added clarification on result scale.
- 3:57 PM Changeset [300] by
- Result from plier is now logarithmized prior imported to BASE
- 3:25 PM Changeset [299] by
- Wiki page changed.
May 23, 2007:
- 3:56 PM Changeset [298] by
- Fixing broken sed substitution.
- 3:56 PM Changeset [297] by
- Fixing copyright year.
- 2:48 PM Changeset [296] by
- removing debug ''
- 2:40 PM Changeset [295] by
- Added Plier class name to instructions.
- 2:34 PM Changeset [294] by
- typo
- 2:31 PM Changeset [293] by
- improved text on PLIER
- 1:46 PM Changeset [292] by
- Fixing precompiled dependency.
- 11:25 AM Ticket #21 (Make installation from the packaged source distribution work) closed by
- fixed: (In [291]) Fixes #21.
- 11:25 AM Changeset [291] by
- Fixes #21.
- 11:04 AM Changeset [290] by
- Got rid of deprecation warning.
May 22, 2007:
- 5:33 PM Changeset [289] by
- improved dependencies
- 5:33 PM Changeset [288] by
- typo
- 4:39 PM Changeset [287] by
- Removed explicit version number.
- 3:20 PM Changeset [286] by
- Fixes #42.
- 3:20 PM Ticket #42 (Add sample extended-properties.xml and configuration files needed for ...) closed by
- fixed: (In [286]) Fixes #42.
- 2:51 PM Changeset [285] by
- Addresses #42.
- 2:51 PM Ticket #42 (Add sample extended-properties.xml and configuration files needed for ...) updated by
- (In [285]) Addresses #42.
- 2:51 PM Changeset [284] by
- Spell checked.
- 2:09 PM Ticket #42 (Add sample extended-properties.xml and configuration files needed for ...) updated by
-
Status changed
- 2:08 PM Ticket #19 (RMA plugin should check that cel files are assigned to correct cdf.) closed by
- duplicate: This is an issue for the BASE team, http://base.thep.lu.se/ticket/372.
- 1:56 PM Ticket #47 (A new release of RMAExpress was released 25 March 2007.) closed by
- fixed: The new releaseis tested and works. There is a minor glitch compiling …
- 1:52 PM Changeset [283] by
- Removed stray \!
- 1:45 PM Changeset [282] by
- Improved text.
- 11:35 AM Changeset [281] by
- Updated confusing numbering.
- 11:30 AM Changeset [280] by
- Removed my email address. Updated RMAExpress information to release …
- 11:29 AM Changeset [279] by
- Removed my email address, and updated link to new demo server location.
- 10:01 AM Ticket #47 (A new release of RMAExpress was released 25 March 2007.) updated by
-
Status changed
- 9:42 AM Ticket #46 (RMAExpress wiki page) updated by
- Have created a …
- 9:39 AM Changeset [278] by
- fixing a few typos
- 9:38 AM se.lu.thep.affymetrix created by
May 21, 2007:
- 7:51 PM Changeset [277] by
- some lippstick refs #45
- 7:51 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- (In [277]) some lippstick refs #45
- 7:44 PM Changeset [276] by
- updated README for affy package refs #45
- 7:44 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- (In [276]) updated README for affy package refs #45
- 7:10 PM Changeset [275] by
- adding property mime-type text/x-trac-wiki
- 7:00 PM Changeset [274] by
- some more lippstick refs #45
- 7:00 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- (In [274]) some more lippstick refs #45
- 6:35 PM Changeset [273] by
- some more installation instructions for affymetrix package refs #45
- 6:35 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- (In [273]) some more installation instructions for affymetrix package …
- 5:57 PM Changeset [272] by
- intermediate commit of new installation instructions for affymetrix …
- 5:57 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- (In [272]) intermediate commit of new installation instructions for …
- 3:32 PM DeveloperPage edited by
- (diff)
- 2:35 PM DeveloperPage edited by
- (diff)
May 16, 2007:
- 6:22 PM Ticket #45 (PLIER - Probe Logaritmic Intensity ERror) updated by
- (In [271]) Fixing the import into BASE of the results generated by …
- 6:22 PM Changeset [271] by
- Fixing the import into BASE of the results generated by PLIER. Refs …
May 15, 2007:
- 3:23 PM Changeset [270] by
- corrected an error message
- 2:29 PM Changeset [269] by
- made findFieldIntList a little bir more stable
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