Timeline



Dec 22, 2006:

4:29 PM Changeset [222] by Johan Enell
References #37
4:29 PM Ticket #37 (Add box-plot output) updated by Johan Enell
(In [222]) References #37

Dec 20, 2006:

3:07 PM Changeset [221] by Johan Enell
Fixes #40
3:07 PM Ticket #40 (Create virtual bioassay containing analysis results) closed by Johan Enell
fixed: (In [221]) Fixes #40

Dec 19, 2006:

11:35 AM Ticket #40 (Create virtual bioassay containing analysis results) updated by Johan Enell
Status changed
The plug-in will need the A value for each spot. The new "merged" spot …
10:35 AM Changeset [220] by Johan Enell
Cleaned up the code

Dec 18, 2006:

4:16 PM Changeset [219] by Johan Enell
Fixes #32 The normsdist function works if used in the correct way. The …
4:16 PM Ticket #32 (Create histogram plot) closed by Johan Enell
fixed: (In [219]) Fixes #32 The normsdist function works if used in the …
12:17 PM DeveloperPage edited by Jari Häkkinen
Adding dev information (diff)
11:40 AM Ticket #42 (Add sample extended-properties.xml and configuration files needed for ...) created by Jari Häkkinen
The README doc describes how change BASE to use the RMA plug-in. The …

Dec 13, 2006:

2:56 PM Changeset [218] by Jari Häkkinen
Creating directories for new developers.

Dec 8, 2006:

5:20 PM Changeset [217] by Johan Enell
References #32. Needs a normsdist function and the HistogramDataset …
5:20 PM Ticket #32 (Create histogram plot) updated by Johan Enell
(In [217]) References #32. Needs a normsdist function and the …
4:02 PM Ticket #41 (Add data to output: sign flag, sign specific rank) created by johan
Add a column to the output containing a sign flag (+ or -) indicating …
3:56 PM Ticket #32 (Create histogram plot) updated by Johan Enell
Summary changed
3:39 PM Ticket #40 (Create virtual bioassay containing analysis results) created by johan
The results from running the Z-test analysis can be viewed as a table …

Dec 7, 2006:

4:55 PM Changeset [216] by Johan Enell
moved plotfunctions to their own class
4:52 PM Ticket #32 (Create histogram plot) updated by Johan Enell
Status changed
4:52 PM Ticket #32 (Create histogram plot) updated by Johan Enell
Use the Method DatasetUtilities.sampleFunction2D() in the …
4:17 PM Changeset [215] by Johan Enell
corrected the classpath
3:16 PM Ticket #30 (Create combination plot) closed by Johan Enell
fixed
3:16 PM Ticket #29 (Create plot FDR vs rank) closed by Johan Enell
fixed
3:15 PM Changeset [214] by Johan Enell
Fixes #29 #30
12:27 PM Ticket #39 (create reporter list (se.lu.onk.ztest)) created by johan
Have the Z-test plugin automatically create a reporter list from …
11:18 AM Ticket #28 (Create plot observed/expected) closed by Johan Enell
fixed: (In [213]) Fixes #28
11:18 AM Changeset [213] by Johan Enell
Fixes #28

Dec 6, 2006:

2:01 PM Changeset [212] by Johan Enell
Case sensitivity added again. Apparently it was needed…
1:50 PM Changeset [211] by Johan Enell
made the filter case insensitive
1:42 PM Changeset [210] by Johan Enell
Fixes #38
1:42 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) closed by Johan Enell
fixed: (In [210]) Fixes #38
1:41 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) updated by Johan Enell
Status changed
The regexp should match the string \r\n and therefore it should look …
10:07 AM Changeset [209] by Johan Enell
added ignore property, not using newline as separator

Dec 5, 2006:

2:43 PM Changeset [208] by Johan Enell
JFreeChart added
2:39 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) created by Johan Enell
The regexp that splits the annotation values is incorrect. It should …
2:21 PM Ticket #28 (Create plot observed/expected) updated by Johan Enell
Status changed

Dec 4, 2006:

4:25 PM Changeset [207] by Johan Enell
Fixes #31 external id, symbol and locuslink is written to table
4:25 PM Ticket #31 (More reporter info) closed by Johan Enell
fixed: (In [207]) Fixes #31 external id, symbol and locuslink is written to table

Dec 1, 2006:

12:57 AM Ticket #17 (Export RMA bioassayset as a tab delimited file) closed by Jari Häkkinen
fixed: The export is implemented as a core plugin and is available in BASE …
12:49 AM PluginDownload edited by Jari Häkkinen
Fixed typo. (diff)
12:34 AM DeveloperPage created by Jari Häkkinen
12:11 AM WikiStart edited by Jari Häkkinen
(diff)

Nov 24, 2006:

5:19 PM Ticket #25 (no prescription phentermine) closed by Jari Häkkinen
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4:25 PM Changeset [206] by Johan Enell
fixes #26
4:25 PM Ticket #26 (Print result table as Output txt) closed by Johan Enell
fixed: (In [206]) fixes #26
4:24 PM Changeset [205] by Johan Enell
added classpath ref
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1:59 PM Ticket #5 (Center on assay) updated by anonymous
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1:55 PM Changeset [204] by Johan Enell
Fixes #27
1:55 PM Ticket #27 (No limit on result list) closed by Johan Enell
fixed: (In [204]) Fixes #27
1:44 PM Ticket #7 (Merge on genesymbol) updated by strapon sex
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1:27 PM Ticket #33 (Change normsdist calculations) closed by Johan Enell
fixed: (In [203]) Fixes #33
1:27 PM Changeset [203] by Johan Enell
Fixes #33
11:05 AM Ticket #37 (Add box-plot output) created by Johan Enell
Add a box-plot that displays the distribution of number of clones or …
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