Timeline



Dec 19, 2006:

10:35 AM Changeset [220] by Johan Enell
Cleaned up the code

Dec 18, 2006:

4:16 PM Changeset [219] by Johan Enell
Fixes #32 The normsdist function works if used in the correct way. The …
4:16 PM Ticket #32 (Create histogram plot) closed by Johan Enell
fixed: (In [219]) Fixes #32 The normsdist function works if used in the …
12:17 PM DeveloperPage edited by Jari Häkkinen
Adding dev information (diff)
11:40 AM Ticket #42 (Add sample extended-properties.xml and configuration files needed for ...) created by Jari Häkkinen
The README doc describes how change BASE to use the RMA plug-in. The …

Dec 13, 2006:

2:56 PM Changeset [218] by Jari Häkkinen
Creating directories for new developers.

Dec 8, 2006:

5:20 PM Changeset [217] by Johan Enell
References #32. Needs a normsdist function and the HistogramDataset?
4:02 PM Ticket #41 (Add data to output: sign flag, sign specific rank) created by johan
Add a column to the output containing a sign flag (+ or -) indicating …
3:39 PM Ticket #40 (Create virtual bioassay containing analysis results) created by johan
The results from running the Z-test analysis can be viewed as a table …

Dec 7, 2006:

4:55 PM Changeset [216] by Johan Enell
moved plotfunctions to their own class
4:17 PM Changeset [215] by Johan Enell
corrected the classpath
3:16 PM Ticket #30 (Create combination plot) closed by Johan Enell
fixed
3:16 PM Ticket #29 (Create plot FDR vs rank) closed by Johan Enell
fixed
3:15 PM Changeset [214] by Johan Enell
Fixes #29 #30
12:27 PM Ticket #39 (create reporter list (se.lu.onk.ztest)) created by johan
Have the Z-test plugin automatically create a reporter list from …
11:18 AM Ticket #28 (Create plot observed/expected) closed by Johan Enell
fixed: (In [213]) Fixes #28
11:18 AM Changeset [213] by Johan Enell
Fixes #28

Dec 6, 2006:

2:01 PM Changeset [212] by Johan Enell
Case sensitivity added again. Apparently it was needed…
1:50 PM Changeset [211] by Johan Enell
made the filter case insensitive
1:42 PM Changeset [210] by Johan Enell
Fixes #38
1:42 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) closed by Johan Enell
fixed: (In [210]) Fixes #38
10:07 AM Changeset [209] by Johan Enell
added ignore property, not using newline as separator

Dec 5, 2006:

2:43 PM Changeset [208] by Johan Enell
JFreeChart added
2:39 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) created by Johan Enell
The regexp that splits the annotation values is incorrect. It should …

Dec 4, 2006:

4:25 PM Changeset [207] by Johan Enell
Fixes #31 external id, symbol and locuslink is written to table
4:25 PM Ticket #31 (More reporter info) closed by Johan Enell
fixed: (In [207]) Fixes #31 external id, symbol and locuslink is written to table

Dec 1, 2006:

12:57 AM Ticket #17 (Export RMA bioassayset as a tab delimited file) closed by Jari Häkkinen
fixed: The export is implemented as a core plugin and is available in BASE …
12:49 AM PluginDownload edited by Jari Häkkinen
Fixed typo. (diff)
12:34 AM DeveloperPage created by Jari Häkkinen
12:11 AM WikiStart edited by Jari Häkkinen
(diff)

Nov 24, 2006:

5:19 PM Ticket #25 (no prescription phentermine) closed by Jari Häkkinen
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5:19 PM Ticket #24 (vagina) closed by Jari Häkkinen
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5:18 PM Ticket #36 (naked girls free) closed by Jari Häkkinen
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5:18 PM Ticket #35 (free sex pics) closed by Jari Häkkinen
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5:17 PM Ticket #23 (nonsoloamore) closed by Jari Häkkinen
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5:17 PM Ticket #22 (vrungel) closed by Jari Häkkinen
invalid
4:25 PM Changeset [206] by Johan Enell
fixes #26
4:25 PM Ticket #26 (Print result table as Output txt) closed by Johan Enell
fixed: (In [206]) fixes #26
4:24 PM Changeset [205] by Johan Enell
added classpath ref
1:55 PM Changeset [204] by Johan Enell
Fixes #27
1:55 PM Ticket #27 (No limit on result list) closed by Johan Enell
fixed: (In [204]) Fixes #27
1:27 PM Ticket #33 (Change normsdist calculations) closed by Johan Enell
fixed: (In [203]) Fixes #33
1:27 PM Changeset [203] by Johan Enell
Fixes #33
11:05 AM Ticket #37 (Add box-plot output) created by Johan Enell
Add a box-plot that displays the distribution of number of clones or …
8:24 AM Ticket #36 (naked girls free) created by naked girls free
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4:39 AM Ticket #35 (free sex pics) created by free sex pics
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Nov 23, 2006:

4:56 PM Ticket #34 (move base.css) created by Johan Enell
Move base.css to a subdirectory.
4:43 PM Changeset [202] by Johan Enell
commons-math added
4:43 PM Changeset [201] by Johan Enell
commons-math added
2:32 PM Ticket #33 (Change normsdist calculations) created by Johan Enell
Use the ERF method in the …
1:48 PM Ticket #32 (Create histogram plot) created by Johan Enell
Create a histogram plot over the mean M for each reporter. Combine …
1:46 PM Ticket #31 (More reporter info) created by Johan Enell
Print more reporter info. external id, gene name, gene symbol, locuslink
1:44 PM Ticket #30 (Create combination plot) created by Johan Enell
A plot combining plots #28 and #29. Two y-axises.
1:41 PM Ticket #29 (Create plot FDR vs rank) created by Johan Enell
x-axis: rank, log scale y-axis: fdr
1:38 PM Ticket #28 (Create plot observed/expected) created by Johan Enell
Create a plot with observed and expected reporters. x-axis: rank, log …
1:25 PM Ticket #27 (No limit on result list) created by Johan Enell
The result list shouldn't be limited to 100 values. Print all.
1:24 PM Ticket #26 (Print result table as Output txt) created by Johan Enell
Export result as tab-separated txt

Nov 22, 2006:

6:54 PM Ticket #25 (no prescription phentermine) created by no prescription phentermine
163a35ac9a15 Hi …
8:12 AM Ticket #24 (vagina) created by vagina
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Nov 21, 2006:

2:05 PM Changeset [200] by Johan Enell
added targets for ztest
2:04 PM Changeset [199] by Johan Enell
added run
2:04 PM Changeset [198] by Johan Enell
added run
1:53 PM Changeset [197] by Johan Enell
callculates with good acc
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