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Timeline

2:56 PM Changeset [218] by Jari Häkkinen: Creating directories for new developers.

5:20 PM Changeset [217] by Johan Enell: References #32. Needs a normsdist function and the HistogramDataset? …
4:02 PM Ticket #41 (Add data to output: sign flag, sign specific rank) created by johan: Add a column to the output containing a sign flag (+ or -) indicating …
3:39 PM Ticket #40 (Create virtual bioassay containing analysis results) created by johan: The results from running the Z-test analysis can be viewed as a table …

4:55 PM Changeset [216] by Johan Enell: moved plotfunctions to their own class
4:17 PM Changeset [215] by Johan Enell: corrected the classpath
3:16 PM Ticket #30 (Create combination plot) closed by Johan Enell: fixed
3:16 PM Ticket #29 (Create plot FDR vs rank) closed by Johan Enell: fixed
3:15 PM Changeset [214] by Johan Enell: Fixes #29 #30
12:27 PM Ticket #39 (create reporter list (se.lu.onk.ztest)) created by johan: Have the Z-test plugin automatically create a reporter list from …
11:18 AM Ticket #28 (Create plot observed/expected) closed by Johan Enell: fixed: (In [213]) Fixes #28
11:18 AM Changeset [213] by Johan Enell: Fixes #28

2:01 PM Changeset [212] by Johan Enell: Case sensitivity added again. Apparently it was needed…
1:50 PM Changeset [211] by Johan Enell: made the filter case insensitive
1:42 PM Changeset [210] by Johan Enell: Fixes #38
1:42 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) closed by Johan Enell: fixed: (In [210]) Fixes #38
10:07 AM Changeset [209] by Johan Enell: added ignore property, not using newline as separator

2:43 PM Changeset [208] by Johan Enell: JFreeChart added
2:39 PM Ticket #38 (Parameterparser splits the annotations values parameter incorrect) created by Johan Enell: The regexp that splits the annotation values is incorrect. It should …

4:25 PM Changeset [207] by Johan Enell: Fixes #31 external id, symbol and locuslink is written to table
4:25 PM Ticket #31 (More reporter info) closed by Johan Enell: fixed: (In [207]) Fixes #31 external id, symbol and locuslink is written to table

12:57 AM Ticket #17 (Export RMA bioassayset as a tab delimited file) closed by Jari Häkkinen: fixed: The export is implemented as a core plugin and is available in BASE …
12:49 AM PluginDownload edited by Jari Häkkinen: Fixed typo. (diff)
12:34 AM DeveloperPage created by Jari Häkkinen
12:11 AM WikiStart edited by Jari Häkkinen: (diff)

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5:17 PM Ticket #23 (nonsoloamore) closed by Jari Häkkinen: invalid
5:17 PM Ticket #22 (vrungel) closed by Jari Häkkinen: invalid
4:25 PM Changeset [206] by Johan Enell: fixes #26
4:25 PM Ticket #26 (Print result table as Output txt) closed by Johan Enell: fixed: (In [206]) fixes #26
4:24 PM Changeset [205] by Johan Enell: added classpath ref
1:55 PM Changeset [204] by Johan Enell: Fixes #27
1:55 PM Ticket #27 (No limit on result list) closed by Johan Enell: fixed: (In [204]) Fixes #27
1:27 PM Ticket #33 (Change normsdist calculations) closed by Johan Enell: fixed: (In [203]) Fixes #33
1:27 PM Changeset [203] by Johan Enell: Fixes #33
11:05 AM Ticket #37 (Add box-plot output) created by Johan Enell: Add a box-plot that displays the distribution of number of clones or …
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4:56 PM Ticket #34 (move base.css) created by Johan Enell: Move base.css to a subdirectory.
4:43 PM Changeset [202] by Johan Enell: commons-math added
4:43 PM Changeset [201] by Johan Enell: commons-math added
2:32 PM Ticket #33 (Change normsdist calculations) created by Johan Enell: Use the ERF method in the …
1:48 PM Ticket #32 (Create histogram plot) created by Johan Enell: Create a histogram plot over the mean M for each reporter. Combine …
1:46 PM Ticket #31 (More reporter info) created by Johan Enell: Print more reporter info. external id, gene name, gene symbol, locuslink
1:44 PM Ticket #30 (Create combination plot) created by Johan Enell: A plot combining plots #28 and #29. Two y-axises.
1:41 PM Ticket #29 (Create plot FDR vs rank) created by Johan Enell: x-axis: rank, log scale y-axis: fdr
1:38 PM Ticket #28 (Create plot observed/expected) created by Johan Enell: Create a plot with observed and expected reporters. x-axis: rank, log …
1:25 PM Ticket #27 (No limit on result list) created by Johan Enell: The result list shouldn't be limited to 100 values. Print all.
1:24 PM Ticket #26 (Print result table as Output txt) created by Johan Enell: Export result as tab-separated txt

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2:53 PM Ticket #22 (vrungel) created by vrungel: e70045ff526f You are doing some very good work …

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