Timeline



Apr 28, 2023:

9:47 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by Nicklas Nordborg
In 7140: […]
9:47 AM Changeset [7140] by Nicklas Nordborg
References #1480: Create import wizard for transfer of external …

Apr 27, 2023:

2:16 PM Ticket #1480 (Create import wizard for transfer of external samples) updated by Nicklas Nordborg
In 7139: […]
2:16 PM Changeset [7139] by Nicklas Nordborg
References #1480: Create import wizard for transfer of external …

Apr 26, 2023:

1:07 PM Ticket #1479 (Add support for creating storage boxes for externally process samples) updated by Nicklas Nordborg
In 7138: […]
1:07 PM Changeset [7138] by Nicklas Nordborg
References #1479: Add support for creating storage boxes for …

Apr 25, 2023:

8:49 AM Ticket #1483 (Add support for using the WGS blood items in the Genotype QC wizard) created by Nicklas Nordborg
When we have verified that genotype QC results from the WGS blood …
8:45 AM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) updated by Nicklas Nordborg
Description changed
8:45 AM Ticket #1482 (Registration wizard for moving tubes between a transport box and a ...) created by Nicklas Nordborg
See also #1478 and #1481. This wizard should register the result of …
8:41 AM Ticket #1481 (Lab protocol for moving samples between transport and storage boxes) created by Nicklas Nordborg
See also #1478 and #1480. We will have item lists that represents a …
8:02 AM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) updated by Nicklas Nordborg
Description changed
8:02 AM Ticket #1480 (Create import wizard for transfer of external samples) updated by Nicklas Nordborg
Description changed
8:01 AM Ticket #1480 (Create import wizard for transfer of external samples) created by Nicklas Nordborg
See also #1478. We will get information about transfered samples from …
7:48 AM Ticket #1479 (Add support for creating storage boxes for externally process samples) created by Nicklas Nordborg
See #1478. The existing storage box creation wizard should be …

Apr 24, 2023:

2:57 PM Ticket #1478 (Implement wizards for registration of samples transfered from an ...) created by Nicklas Nordborg
Material in the for of Specimen, Lysate, RNA, DNA and FlowThrough is …
12:47 PM Changeset [7137] by Nicklas Nordborg
Changes for future release Reggie 4.47
12:46 PM Milestone Reggie v4.46 completed
See Reggie extension page for more information.
12:45 PM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.46 (diff)
12:43 PM reggie-4.46.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.46
12:42 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) closed by Nicklas Nordborg
fixed
12:41 PM Changeset [7136] by Nicklas Nordborg
Tagging Reggie 4.46
12:41 PM Changeset [7135] by Nicklas Nordborg
Preparing to release Reggie 4.46
9:51 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7134: […]
9:51 AM Changeset [7134] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Do not …
9:37 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7133: […]
9:37 AM Changeset [7133] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
9:36 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7132: […]
9:36 AM Changeset [7132] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
9:34 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7131: […]
9:34 AM Changeset [7131] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …

Apr 21, 2023:

2:28 PM Changeset [7130] by Nicklas Nordborg
Changes for future release Variant Search 1.9
2:27 PM Milestone Variant Search v1.8 completed
See Variant Search extension page for …
2:26 PM net.sf.basedb.varsearch edited by Nicklas Nordborg
Released Variant Search 1.8 (diff)
2:25 PM varsearch-1.8.tar.gz attached to net.sf.basedb.varsearch by Nicklas Nordborg
Variant Search 1.8
2:24 PM Ticket #1467 (Switch to BASE 3.19.8 and use the new service logging implementation) closed by Nicklas Nordborg
fixed
2:23 PM Changeset [7129] by Nicklas Nordborg
Tagging Variant Search 1.8
2:22 PM Changeset [7128] by Nicklas Nordborg
Preparing to release Variant Search 1.8
1:58 PM Changeset [7127] by Nicklas Nordborg
Changes for future release Job scheduler 1.11
1:57 PM Milestone Job scheduler extension v1.10 completed
See the Job scheduler extension page for …
1:56 PM net.sf.basedb.opengrid edited by Nicklas Nordborg
Released Job scheduler extension 1.10 (diff)
1:53 PM opengrid-1.10.tar.gz attached to net.sf.basedb.opengrid by Nicklas Nordborg
Job scheduler 1.10
1:52 PM Changeset [7126] by Nicklas Nordborg
Tagging Job scheduler 1.10
1:51 PM Changeset [7125] by Nicklas Nordborg
Preparing to release Job scheduler 1.10
12:00 PM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) updated by Nicklas Nordborg
Milestone changed
Milestone renamed
12:00 PM Tickets #1455,​1458,​1459 batch updated by Nicklas Nordborg
Milestone changed
Milestone renamed
11:57 AM Ticket #1466 (Switch to BASE 3.19.8 and use the new service logging implementation) closed by Nicklas Nordborg
fixed
11:35 AM Ticket #1476 (Implement a nice viewer for result and log files) closed by Nicklas Nordborg
fixed
11:31 AM Ticket #1472 (Use the new service logging implementation) closed by Nicklas Nordborg
fixed
11:30 AM Ticket #1470 (Use multiple threads when loading existing VCF files in the genotype ...) closed by Nicklas Nordborg
fixed
11:19 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7124: […]
11:19 AM Changeset [7124] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Fixed …
9:29 AM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) closed by Nicklas Nordborg
fixed: In 7123: […]
9:29 AM Changeset [7123] by Nicklas Nordborg
Fixes #1477: The Hisat/2023 pipeline should not flag RNA items Also …
9:19 AM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) updated by Nicklas Nordborg
In 7122: […]
9:19 AM Changeset [7122] by Nicklas Nordborg
References #1477: The Hisat/2023 pipeline should not flag RNA items …
9:15 AM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) closed by Nicklas Nordborg
fixed: In 7121: […]
9:15 AM Changeset [7121] by Nicklas Nordborg
Fixes #1475: Validation of laterality fails with error if it is …

Apr 20, 2023:

1:29 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7120: […]
1:29 PM Changeset [7120] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
1:13 PM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) updated by Nicklas Nordborg
Milestone, Summary changed
1:12 PM Ticket #1477 (The Hisat/2023 pipeline should not flag RNA items) created by Nicklas Nordborg
The auto-confirmation for the Hisat/2023 have the same rules as the …

Apr 19, 2023:

12:59 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7119: […]
12:59 PM Changeset [7119] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …

Apr 18, 2023:

3:37 PM Changeset [7118] by Nicklas Nordborg
Implement #1476: Implement a nice viewer for result and log files …
9:35 AM Changeset [7117] by Nicklas Nordborg
Implement #1476: Implement a nice viewer for result and log files …

Apr 17, 2023:

2:18 PM Changeset [7116] by Nicklas Nordborg
Implement #1476: Implement a nice viewer for result and log files …
2:03 PM Changeset [7115] by Nicklas Nordborg
Implement #1476: Implement a nice viewer for result and log files …
11:26 AM Ticket #1476 (Implement a nice viewer for result and log files) updated by Nicklas Nordborg
Description changed
11:24 AM Ticket #1476 (Implement a nice viewer for result and log files) created by Nicklas Nordborg
Log files and other result files from the secondary analysis often …

Apr 14, 2023:

11:46 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7114: […]
11:46 AM Changeset [7114] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
9:34 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7113: […]
9:34 AM Changeset [7113] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
9:24 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7112: […]
9:24 AM Changeset [7112] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Making …
7:20 AM net.sf.basedb.meludi edited by olle
Updated version of README file to 1.6.0. (diff)

Apr 13, 2023:

1:31 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7111: […]
1:31 PM Changeset [7111] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Use …
11:08 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7110: […]
11:08 AM Changeset [7110] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline All …
10:46 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7109: […]
10:46 AM Changeset [7109] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
10:39 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7108: […]
10:39 AM Changeset [7108] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …

Apr 12, 2023:

1:46 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7107: […]
1:45 PM Changeset [7107] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
11:27 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7106: […]
11:27 AM Changeset [7106] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …

Apr 11, 2023:

1:35 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7105: […]
1:35 PM Changeset [7105] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
1:20 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7104: […]
1:20 PM Changeset [7104] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
1:16 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7103: […]
1:16 PM Changeset [7103] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
11:34 AM Ticket #1475 (Validation of laterality fails with error if it is missing in the JSON ...) created by Nicklas Nordborg
Normally, the laterality is allowed to be missing in a JSON file since …

Apr 6, 2023:

1:42 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7102: […]
1:42 PM Changeset [7102] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Remove …
1:14 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7101: […]
1:14 PM Changeset [7101] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
12:54 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7100: […]
12:54 PM Changeset [7100] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Better …
12:44 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7099: […]
12:44 PM Changeset [7099] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
8:58 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7098: […]
8:58 AM Changeset [7098] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …

Apr 5, 2023:

8:49 AM Changeset [7097] by Nicklas Nordborg
Merge Reggie 4.45.2 to the trunk.
8:47 AM Milestone Reggie v4.45.2 completed
Bug fixes and enhancements for Reggie 4.45.1. Revision Log: …
8:46 AM net.sf.basedb.reggie edited by Nicklas Nordborg
Released Reggie 4.45.2 (diff)
8:45 AM reggie-4.45.2.tar.gz attached to net.sf.basedb.reggie by Nicklas Nordborg
Reggie 4.45.2
8:44 AM Changeset [7096] by Nicklas Nordborg
Tagging Reggie 4.45.2
8:43 AM Changeset [7095] by Nicklas Nordborg
Preparing to release Reggie 4.45.2
8:40 AM Ticket #1461 (Temporarily disable importing of sampling and RNA later date in the ...) updated by Nicklas Nordborg
The dates can't be used and the code has been removed in #1474 [7094].
8:40 AM Ticket #1474 (Stop importing of "Arrival date" from JSON files) closed by Nicklas Nordborg
fixed: In 7094: […]
8:40 AM Changeset [7094] by Nicklas Nordborg
Fixes #1474: Stop importing of "Arrival date" from JSON files Also …
8:32 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7093: […]
8:32 AM Changeset [7093] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …

Apr 4, 2023:

2:23 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7092: […]
2:23 PM Changeset [7092] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline First …
11:01 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7091: […]
11:01 AM Changeset [7091] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
10:56 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7090: […]
10:56 AM Changeset [7090] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
8:36 AM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7089: […]
8:36 AM Changeset [7089] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Copy …

Apr 3, 2023:

2:12 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7088: […]
2:12 PM Changeset [7088] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
1:55 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7087: […]
1:55 PM Changeset [7087] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline The …

Mar 31, 2023:

1:28 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7086: […]
1:28 PM Changeset [7086] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline …
1:24 PM Ticket #1473 (Implement alignment for the DNA WGS pipeline) updated by Nicklas Nordborg
In 7085: […]
1:24 PM Changeset [7085] by Nicklas Nordborg
References #1473: Implement alignment for the DNA WGS pipeline Added …
Note: See TracTimeline for information about the timeline view.